Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:32:35 (12856): wrapper (7.7.26015): starting
04:32:35 (12856): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 04:32:35] Arguments: --nthreads 12
[2025-12-13 04:32:35] Threads: 12
[2025-12-13 04:32:35] Checking for CVMFS
[2025-12-13 04:32:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 04:32:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 04:32:36] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 04:32:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 04:32:36] 2.11.2.0 2925 311986 95828 153955 2 58 15027411 20275200 1 130560 1 137670994 99.966 18148835 15156 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 04:32:36] CVMFS is ok
[2025-12-13 04:32:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 04:32:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 04:32:36] Further information can be found at the LHC@home message board.
[2025-12-13 04:32:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 04:32:36] Checking for apptainer binary...
[2025-12-13 04:32:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 04:32:36] Running /usr/bin/apptainer --version
[2025-12-13 04:32:36] apptainer version 1.3.2-1.el7
[2025-12-13 04:32:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 04:32:37] c-205-9.aglt2.org
[2025-12-13 04:32:37] apptainer works
[2025-12-13 04:32:37] Set ATHENA_PROC_NUMBER=12
[2025-12-13 04:32:37] Set ATHENA_CORE_NUMBER=12
[2025-12-13 04:32:37] Starting ATLAS job with PandaID=6929222249
[2025-12-13 04:32:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 05:50:05]  *** The last 200 lines of the pilot log: ***
[2025-12-13 05:50:05] 2025-12-13 10:49:21,516 | WARNING  | process 22969 can no longer be monitored (due to stat problems) - aborting
[2025-12-13 05:50:05] 2025-12-13 10:49:21,516 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929222249/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 05:50:05] 2025-12-13 10:49:21,517 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929222249/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 05:50:05] 2025-12-13 10:49:21,517 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-12-13 05:50:05] 2025-12-13 10:49:21,518 | WARNING  | maxPSS not found in memory monitor output
[2025-12-13 05:50:05] 2025-12-13 10:49:21,518 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3717161 B
[2025-12-13 05:50:05] 2025-12-13 10:49:21,518 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15349 B
[2025-12-13 05:50:05] 2025-12-13 10:49:21,518 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 05:50:05] 2025-12-13 10:49:21,537 | INFO     | sufficient remaining disk space (29457645568 B)
[2025-12-13 05:50:05] 2025-12-13 10:49:21,537 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-13 05:50:05] 2025-12-13 10:49:21,538 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6929222249: 4015076 B (within 2768240640 B limit)
[2025-12-13 05:50:05] 2025-12-13 10:49:21,538 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6929222249/HITS.47886831._004281.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-13 05:50:05] 2025-12-13 10:49:21,539 | INFO     | total size of present files: 0 B (workdir size: 4015076 B)
[2025-12-13 05:50:05] 2025-12-13 10:49:21,539 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6929222249/HITS.47886831._004281.pool.root.1 since it does not exist
[2025-12-13 05:50:05] 2025-12-13 10:49:21,624 | INFO     | number of running child processes to parent process 22969: 1
[2025-12-13 05:50:05] 2025-12-13 10:49:21,624 | INFO     | maximum number of monitored processes: 6
[2025-12-13 05:50:05] 2025-12-13 10:49:21,686 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 05:50:05] 2025-12-13 10:49:22,522 | INFO     | time since job start (4590s) is within the limit (174528.0s)
[2025-12-13 05:50:05] 2025-12-13 10:49:23,760 | INFO     | job 6929222249 has state=finished
[2025-12-13 05:50:05] 2025-12-13 10:49:23,760 | INFO     | preparing for final server update for job 6929222249 in state='finished'
[2025-12-13 05:50:05] 2025-12-13 10:49:23,761 | INFO     | this job has now completed (state=finished)
[2025-12-13 05:50:05] 2025-12-13 10:49:23,761 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 05:50:05] 2025-12-13 10:49:23,761 | INFO     | log transfer has been attempted: DONE
[2025-12-13 05:50:05] 2025-12-13 10:49:23,761 | INFO     | job 6929222249 has finished - writing final server update
[2025-12-13 05:50:05] 2025-12-13 10:49:23,762 | INFO     | total number of processed events: 400 (read)
[2025-12-13 05:50:05] 2025-12-13 10:49:23,762 | INFO     | executing command: lscpu
[2025-12-13 05:50:05] 2025-12-13 10:49:23,790 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 05:50:05] 2025-12-13 10:49:24,127 | INFO     | monitor loop #341: job 0:6929222249 is in state 'finished'
[2025-12-13 05:50:05] 2025-12-13 10:49:24,127 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 05:50:05] 2025-12-13 10:49:24,528 | INFO     | time since job start (4592s) is within the limit (174528.0s)
[2025-12-13 05:50:05] 2025-12-13 10:49:26,533 | INFO     | time since job start (4594s) is within the limit (174528.0s)
[2025-12-13 05:50:05] 2025-12-13 10:49:26,630 | INFO     | monitor loop #342: job 0:6929222249 is in state 'finished'
[2025-12-13 05:50:05] 2025-12-13 10:49:26,630 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 05:50:05] 2025-12-13 10:49:27,655 | INFO     | PID=16531 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 05:50:05] 2025-12-13 10:49:28,656 | INFO     | time since job start (4596s) is within the limit (174528.0s)
[2025-12-13 05:50:05] 2025-12-13 10:49:29,133 | INFO     | monitor loop #343: job 0:6929222249 is in state 'finished'
[2025-12-13 05:50:05] 2025-12-13 10:49:29,133 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 05:50:05] 2025-12-13 10:49:29,783 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 05:50:05] 2025-12-13 10:49:29,787 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-12-13 05:50:05] 2025-12-13 10:49:29,789 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929222249/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 05:50:05] 2025-12-13 10:49:29,790 | INFO     | extracted standard info from prmon json
[2025-12-13 05:50:05] 2025-12-13 10:49:29,790 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 05:50:05] 2025-12-13 10:49:29,790 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 05:50:05] 2025-12-13 10:49:29,790 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 05:50:05] 2025-12-13 10:49:29,790 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 05:50:05] 2025-12-13 10:49:29,792 | INFO     | fitting pss+swap vs Time
[2025-12-13 05:50:05] 2025-12-13 10:49:29,792 | INFO     | sum of square deviations: 97479037.0
[2025-12-13 05:50:05] 2025-12-13 10:49:29,792 | INFO     | sum of deviations: -8796619283.5
[2025-12-13 05:50:05] 2025-12-13 10:49:29,792 | INFO     | mean x: 1765620749.5
[2025-12-13 05:50:05] 2025-12-13 10:49:29,792 | INFO     | mean y: 2816639.044117647
[2025-12-13 05:50:05] 2025-12-13 10:49:29,793 | INFO     | intersect: 159334443318.93655
[2025-12-13 05:50:05] 2025-12-13 10:49:29,793 | INFO     | chi2: 0.06232428748079183
[2025-12-13 05:50:05] 2025-12-13 10:49:29,793 | INFO     | current memory leak: -90.24 B/s (using 68 data points, chi2=0.06)
[2025-12-13 05:50:05] 2025-12-13 10:49:29,793 | INFO     | could have reported an average CPU frequency of 2026 MHz (6 samples)
[2025-12-13 05:50:05] 2025-12-13 10:49:29,793 | INFO     | ..............................
[2025-12-13 05:50:05] 2025-12-13 10:49:29,793 | INFO     | . Timing measurements:
[2025-12-13 05:50:05] 2025-12-13 10:49:29,794 | INFO     | . get job = 0 s
[2025-12-13 05:50:05] 2025-12-13 10:49:29,794 | INFO     | . initial setup = 2 s
[2025-12-13 05:50:05] 2025-12-13 10:49:29,794 | INFO     | . payload setup = 7 s
[2025-12-13 05:50:05] 2025-12-13 10:49:29,794 | INFO     | . stage-in = 0 s
[2025-12-13 05:50:05] 2025-12-13 10:49:29,794 | INFO     | . payload execution = 4558 s
[2025-12-13 05:50:05] 2025-12-13 10:49:29,794 | INFO     | . stage-out = 0 s
[2025-12-13 05:50:05] 2025-12-13 10:49:29,794 | INFO     | . log creation = 0 s
[2025-12-13 05:50:05] 2025-12-13 10:49:29,794 | INFO     | ..............................
[2025-12-13 05:50:05] 2025-12-13 10:49:29,873 | INFO     | 
[2025-12-13 05:50:05] 2025-12-13 10:49:29,874 | INFO     | job summary report
[2025-12-13 05:50:05] 2025-12-13 10:49:29,874 | INFO     | --------------------------------------------------
[2025-12-13 05:50:05] 2025-12-13 10:49:29,874 | INFO     | PanDA job id: 6929222249
[2025-12-13 05:50:05] 2025-12-13 10:49:29,874 | INFO     | task id: 47886831
[2025-12-13 05:50:05] 2025-12-13 10:49:29,874 | INFO     | errors: (none)
[2025-12-13 05:50:05] 2025-12-13 10:49:29,875 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 05:50:05] 2025-12-13 10:49:29,875 | INFO     | pilot state: finished 
[2025-12-13 05:50:05] 2025-12-13 10:49:29,875 | INFO     | transexitcode: 0
[2025-12-13 05:50:05] 2025-12-13 10:49:29,875 | INFO     | exeerrorcode: 0
[2025-12-13 05:50:05] 2025-12-13 10:49:29,875 | INFO     | exeerrordiag: 
[2025-12-13 05:50:05] 2025-12-13 10:49:29,875 | INFO     | exitcode: 0
[2025-12-13 05:50:05] 2025-12-13 10:49:29,875 | INFO     | exitmsg: OK
[2025-12-13 05:50:05] 2025-12-13 10:49:29,876 | INFO     | cpuconsumptiontime: 48680 s
[2025-12-13 05:50:05] 2025-12-13 10:49:29,876 | INFO     | nevents: 400
[2025-12-13 05:50:05] 2025-12-13 10:49:29,876 | INFO     | neventsw: 0
[2025-12-13 05:50:05] 2025-12-13 10:49:29,876 | INFO     | pid: 22969
[2025-12-13 05:50:05] 2025-12-13 10:49:29,876 | INFO     | pgrp: 22969
[2025-12-13 05:50:05] 2025-12-13 10:49:29,876 | INFO     | corecount: 12
[2025-12-13 05:50:05] 2025-12-13 10:49:29,877 | INFO     | event service: False
[2025-12-13 05:50:05] 2025-12-13 10:49:29,877 | INFO     | sizes: {0: 2283812, 1: 2284011, 6: 2284273, 11: 2284301, 4569: 2310392, 4570: 2319390, 4573: 2319602, 4581: 2319796}
[2025-12-13 05:50:05] 2025-12-13 10:49:29,877 | INFO     | --------------------------------------------------
[2025-12-13 05:50:05] 2025-12-13 10:49:29,877 | INFO     | 
[2025-12-13 05:50:05] 2025-12-13 10:49:29,877 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 05:50:05] 2025-12-13 10:49:29,903 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 05:50:05] 2025-12-13 10:49:29,903 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 05:50:05] 2025-12-13 10:49:29,903 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 05:50:05] 2025-12-13 10:49:29,903 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 05:50:05] 2025-12-13 10:49:29,904 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 05:50:05] 2025-12-13 10:49:29,904 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 05:50:05] 2025-12-13 10:49:29,904 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 05:50:05] 2025-12-13 10:49:29,904 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 05:50:05] 2025-12-13 10:49:29,904 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 05:50:05] 2025-12-13 10:49:29,904 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 05:50:05] 2025-12-13 10:49:29,905 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 05:50:05] 2025-12-13 10:49:29,905 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 05:50:05] 2025-12-13 10:49:29,905 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 05:50:05] 2025-12-13 10:49:29,905 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 05:50:05] 2025-12-13 10:49:29,905 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 05:50:05] 2025-12-13 10:49:29,905 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 05:50:05] 2025-12-13 10:49:29,905 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 05:50:05] 2025-12-13 10:49:29,906 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 05:50:05] 2025-12-13 10:49:29,906 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 05:50:05] 2025-12-13 10:49:29,906 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 05:50:05] 2025-12-13 10:49:29,906 | INFO     | job 6929222249 has completed (purged errors)
[2025-12-13 05:50:05] 2025-12-13 10:49:29,906 | INFO     | overall cleanup function is called
[2025-12-13 05:50:05] 2025-12-13 10:49:30,914 | INFO     | --- collectZombieJob: --- 10, [22969]
[2025-12-13 05:50:05] 2025-12-13 10:49:30,914 | INFO     | zombie collector waiting for pid 22969
[2025-12-13 05:50:05] 2025-12-13 10:49:30,914 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 05:50:05] 2025-12-13 10:49:30,914 | INFO     | collected zombie processes
[2025-12-13 05:50:05] 2025-12-13 10:49:30,915 | INFO     | will attempt to kill all subprocesses of pid=22969
[2025-12-13 05:50:05] 2025-12-13 10:49:31,004 | INFO     | process IDs to be killed: [22969] (in reverse order)
[2025-12-13 05:50:05] 2025-12-13 10:49:31,056 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 05:50:05] 2025-12-13 10:49:31,056 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 05:50:05] 2025-12-13 10:49:31,058 | INFO     | did not find any defunct processes belonging to 22969
[2025-12-13 05:50:05] 2025-12-13 10:49:31,060 | INFO     | did not find any defunct processes belonging to 22969
[2025-12-13 05:50:05] 2025-12-13 10:49:31,061 | INFO     | ready for new job
[2025-12-13 05:50:05] 2025-12-13 10:49:31,061 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 05:50:05] 2025-12-13 10:49:31,062 | INFO     | ***************************************
[2025-12-13 05:50:05] 2025-12-13 10:49:31,062 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 05:50:05] 2025-12-13 10:49:31,062 | INFO     | ***************************************
[2025-12-13 05:50:05] 2025-12-13 10:49:31,062 | INFO     | 
[2025-12-13 05:50:05] 2025-12-13 10:49:31,063 | INFO     | architecture information:
[2025-12-13 05:50:05] 2025-12-13 10:49:31,063 | INFO     | executing command: cat /etc/os-release
[2025-12-13 05:50:05] 2025-12-13 10:49:31,077 | INFO     | cat /etc/os-release:
[2025-12-13 05:50:05] NAME="CentOS Linux"
[2025-12-13 05:50:05] VERSION="7 (Core)"
[2025-12-13 05:50:05] ID="centos"
[2025-12-13 05:50:05] ID_LIKE="rhel fedora"
[2025-12-13 05:50:05] VERSION_ID="7"
[2025-12-13 05:50:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 05:50:05] ANSI_COLOR="0;31"
[2025-12-13 05:50:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 05:50:05] HOME_URL="https://www.centos.org/"
[2025-12-13 05:50:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 05:50:05] 
[2025-12-13 05:50:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 05:50:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 05:50:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 05:50:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 05:50:05] 
[2025-12-13 05:50:05] 2025-12-13 10:49:31,077 | INFO     | ***************************************
[2025-12-13 05:50:05] 2025-12-13 10:49:31,580 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 05:50:05] 2025-12-13 10:49:31,622 | INFO     | sufficient remaining disk space (29462888448 B)
[2025-12-13 05:50:05] 2025-12-13 10:49:31,622 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 05:50:05] 2025-12-13 10:49:31,623 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 05:50:05] 2025-12-13 10:49:31,623 | INFO     | update_server=False
[2025-12-13 05:50:05] 2025-12-13 10:49:31,623 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 05:50:05] 2025-12-13 10:49:31,623 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 05:50:05] 2025-12-13 10:49:31,636 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-13 05:50:05] 2025-12-13 10:49:31,636 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-13 05:50:05] 2025-12-13 10:49:31,637 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 05:50:05] 2025-12-13 10:49:31,637 | INFO     | will abort loop
[2025-12-13 05:50:05] 2025-12-13 10:49:31,781 | INFO     | all data control threads have been joined
[2025-12-13 05:50:05] 2025-12-13 10:49:32,279 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 05:50:05] 2025-12-13 10:49:32,395 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 05:50:05] 2025-12-13 10:49:32,629 | INFO     | [job] retrieve thread has finished
[2025-12-13 05:50:05] 2025-12-13 10:49:32,629 | INFO     | [job] queue monitor thread has finished
[2025-12-13 05:50:05] 2025-12-13 10:49:32,642 | INFO     | [job] job monitor thread has finished
[2025-12-13 05:50:05] 2025-12-13 10:49:32,782 | INFO     | [data] control thread has finished
[2025-12-13 05:50:05] 2025-12-13 10:49:32,794 | INFO     | all payload control threads have been joined
[2025-12-13 05:50:05] 2025-12-13 10:49:32,838 | INFO     | all job control threads have been joined
[2025-12-13 05:50:05] 2025-12-13 10:49:32,877 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 05:50:05] 2025-12-13 10:49:32,945 | INFO     | [payload] validate_post thread has finished
[2025-12-13 05:50:05] 2025-12-13 10:49:33,122 | INFO     | [data] copytool_in thread has finished
[2025-12-13 05:50:05] 2025-12-13 10:49:33,442 | INFO     | [payload] failed_post thread has finished
[2025-12-13 05:50:05] 2025-12-13 10:49:33,469 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 05:50:05] 2025-12-13 10:49:33,750 | INFO     | [job] validate thread has finished
[2025-12-13 05:50:05] 2025-12-13 10:49:33,797 | INFO     | [payload] control thread has finished
[2025-12-13 05:50:05] 2025-12-13 10:49:33,841 | INFO     | [job] control thread has finished
[2025-12-13 05:50:05] 2025-12-13 10:49:33,844 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 05:50:05] 2025-12-13 10:49:33,919 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 05:50:05] 2025-12-13 10:49:34,401 | INFO     | [data] copytool_out thread has finished
[2025-12-13 05:50:05] 2025-12-13 10:49:36,285 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 05:50:05] 2025-12-13 10:49:59,764 | INFO     | [monitor] cgroup control has ended
[2025-12-13 05:50:05] 2025-12-13 10:49:59,802 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140354126804800)>', '<ExcThread(monitor, started 140353524971264)>']
[2025-12-13 05:50:05] 2025-12-13 10:50:01,863 | INFO     | PID=16531 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 05:50:05] 2025-12-13 10:50:01,864 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 05:50:05] 2025-12-13 10:50:01,864 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 05:50:05] 2025-12-13 10:50:01,864 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 05:50:05] 2025-12-13 10:50:01,864 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 05:50:05] 2025-12-13 10:50:01,865 | INFO     | [monitor] control thread has ended
[2025-12-13 05:50:05] 2025-12-13 10:50:04,828 | INFO     | all workflow threads have been joined
[2025-12-13 05:50:05] 2025-12-13 10:50:04,828 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 05:50:05] 2025-12-13 10:50:04,838 | INFO     | traces error code: 0
[2025-12-13 05:50:05] 2025-12-13 10:50:04,838 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 05:50:05] 2025-12-13 10:50:04,919 [wrapper] ==== pilot stdout END ====
[2025-12-13 05:50:05] 2025-12-13 10:50:04,923 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 05:50:05] 2025-12-13 10:50:04,927 [wrapper] pilotpid: 16531
[2025-12-13 05:50:05] 2025-12-13 10:50:04,930 [wrapper] Pilot exit status: 0
[2025-12-13 05:50:05] 2025-12-13 10:50:04,946 [wrapper] pandaids: 6929222249
[2025-12-13 05:50:05] 2025-12-13 10:50:04,988 [wrapper] cleanup supervisor_pilot 18541 16532
[2025-12-13 05:50:05] 2025-12-13 10:50:04,991 [wrapper] Test setup, not cleaning
[2025-12-13 05:50:05] 2025-12-13 10:50:04,995 [wrapper] apfmon messages muted
[2025-12-13 05:50:05] 2025-12-13 10:50:05,000 [wrapper] ==== wrapper stdout END ====
[2025-12-13 05:50:05] 2025-12-13 10:50:05,004 [wrapper] ==== wrapper stderr END ====
[2025-12-13 05:50:05]  *** Error codes and diagnostics ***
[2025-12-13 05:50:05]     "exeErrorCode": 0,
[2025-12-13 05:50:05]     "exeErrorDiag": "",
[2025-12-13 05:50:05]     "pilotErrorCode": 0,
[2025-12-13 05:50:05]     "pilotErrorDiag": "",
[2025-12-13 05:50:05]  *** Listing of results directory ***
[2025-12-13 05:50:05] total 331292
[2025-12-13 05:50:05] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 03:48 pilot3.tar.gz
[2025-12-13 05:50:05] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 03:48 queuedata.json
[2025-12-13 05:50:05] -rwx------ 1 boincer umatlas     36322 Dec 13 03:48 runpilot2-wrapper.sh
[2025-12-13 05:50:05] -rw-r--r-- 1 boincer umatlas       100 Dec 13 04:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 05:50:05] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 04:32 run_atlas
[2025-12-13 05:50:05] -rw-r--r-- 1 boincer umatlas       105 Dec 13 04:32 job.xml
[2025-12-13 05:50:05] -rw-r--r-- 2 boincer umatlas 191393420 Dec 13 04:32 EVNT.47886829._000172.pool.root.1
[2025-12-13 05:50:05] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 04:32 start_atlas.sh
[2025-12-13 05:50:05] drwxrwx--x 2 boincer umatlas      4096 Dec 13 04:32 shared
[2025-12-13 05:50:05] -rw-r--r-- 2 boincer umatlas    592409 Dec 13 04:32 input.tar.gz
[2025-12-13 05:50:05] -rw-r--r-- 1 boincer umatlas         0 Dec 13 04:32 boinc_lockfile
[2025-12-13 05:50:05] -rw-r--r-- 1 boincer umatlas      2534 Dec 13 04:32 pandaJob.out
[2025-12-13 05:50:05] -rw------- 1 boincer umatlas        57 Dec 13 04:32 setup.sh.local
[2025-12-13 05:50:05] -rw------- 1 boincer umatlas    991736 Dec 13 04:32 agis_schedconf.cvmfs.json
[2025-12-13 05:50:05] -rw------- 1 boincer umatlas   1516240 Dec 13 04:32 agis_ddmendpoints.agis.ALL.json
[2025-12-13 05:50:05] drwx------ 5 boincer umatlas      4096 Dec 13 04:32 pilot3
[2025-12-13 05:50:05] -rw-r--r-- 1 boincer umatlas      5953 Dec 13 05:47 init_data.xml
[2025-12-13 05:50:05] -rw-r--r-- 1 boincer umatlas       529 Dec 13 05:48 boinc_task_state.xml
[2025-12-13 05:50:05] -rw------- 1 boincer umatlas 141864850 Dec 13 05:48 HITS.47886831._004281.pool.root.1
[2025-12-13 05:50:05] -rw------- 1 boincer umatlas      1042 Dec 13 05:49 memory_monitor_summary.json
[2025-12-13 05:50:05] -rw------- 1 boincer umatlas    368654 Dec 13 05:49 log.47886831._004281.job.log.tgz.1
[2025-12-13 05:50:05] -rw------- 1 boincer umatlas      7843 Dec 13 05:49 heartbeat.json
[2025-12-13 05:50:05] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 05:49 boinc_mmap_file
[2025-12-13 05:50:05] -rw-r--r-- 1 boincer umatlas        27 Dec 13 05:49 wrapper_checkpoint.txt
[2025-12-13 05:50:05] -rw------- 1 boincer umatlas        95 Dec 13 05:50 pilot_heartbeat.json
[2025-12-13 05:50:05] -rw------- 1 boincer umatlas      4932 Dec 13 05:50 pilotlog.txt
[2025-12-13 05:50:05] -rw------- 1 boincer umatlas    666108 Dec 13 05:50 log.47886831._004281.job.log.1
[2025-12-13 05:50:05] -rw------- 1 boincer umatlas       357 Dec 13 05:50 output.list
[2025-12-13 05:50:05] -rw-r--r-- 1 boincer umatlas       620 Dec 13 05:50 runtime_log
[2025-12-13 05:50:05] -rw------- 1 boincer umatlas   1054720 Dec 13 05:50 result.tar.gz
[2025-12-13 05:50:05] -rw-r--r-- 1 boincer umatlas      9339 Dec 13 05:50 runtime_log.err
[2025-12-13 05:50:05] -rw------- 1 boincer umatlas       658 Dec 13 05:50 OV7LDmnTao8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmkBOKDmncyKQo.diag
[2025-12-13 05:50:05] -rw-r--r-- 1 boincer umatlas     22603 Dec 13 05:50 stderr.txt
[2025-12-13 05:50:05] HITS file was successfully produced:
[2025-12-13 05:50:05] -rw------- 1 boincer umatlas 141864850 Dec 13 05:48 shared/HITS.pool.root.1
[2025-12-13 05:50:05]  *** Contents of shared directory: ***
[2025-12-13 05:50:05] total 327076
[2025-12-13 05:50:05] -rw-r--r-- 2 boincer umatlas 191393420 Dec 13 04:32 ATLAS.root_0
[2025-12-13 05:50:05] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 04:32 start_atlas.sh
[2025-12-13 05:50:05] -rw-r--r-- 2 boincer umatlas    592409 Dec 13 04:32 input.tar.gz
[2025-12-13 05:50:05] -rw------- 1 boincer umatlas 141864850 Dec 13 05:48 HITS.pool.root.1
[2025-12-13 05:50:05] -rw------- 1 boincer umatlas   1054720 Dec 13 05:50 result.tar.gz
05:50:06 (12856): run_atlas exited; CPU time 48666.498628
05:50:06 (12856): called boinc_finish(0)

</stderr_txt>
]]>

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