Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:37:03 (1452896): wrapper (7.7.26015): starting
09:37:03 (1452896): wrapper: running run_atlas (--nthreads 4)
[2025-12-13 09:37:03] Arguments: --nthreads 4
[2025-12-13 09:37:03] Threads: 4
[2025-12-13 09:37:03] Checking for CVMFS
[2025-12-13 09:37:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 09:37:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 09:37:03] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 09:37:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 09:37:03] 2.9.2.0 1125523 77 63208 153954 2 186 18879898 36864000 0 130560 0 867914 100.000 2683 97 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-13 09:37:03] CVMFS is ok
[2025-12-13 09:37:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 09:37:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 09:37:03] Further information can be found at the LHC@home message board.
[2025-12-13 09:37:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 09:37:03] Checking for apptainer binary...
[2025-12-13 09:37:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 09:37:03] Running /usr/bin/apptainer --version
[2025-12-13 09:37:03] apptainer version 1.4.1-1.1
[2025-12-13 09:37:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 09:37:03] thA325
[2025-12-13 09:37:03] apptainer works
[2025-12-13 09:37:04] Set ATHENA_PROC_NUMBER=4
[2025-12-13 09:37:04] Set ATHENA_CORE_NUMBER=4
[2025-12-13 09:37:04] Starting ATLAS job with PandaID=6929039974
[2025-12-13 09:37:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 09:41:23]  *** The last 200 lines of the pilot log: ***
[2025-12-13 09:41:23] 2025-12-13 08:40:19,936 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 09:41:23] 2025-12-13 08:40:20,541 | INFO     | all data control threads have been joined
[2025-12-13 09:41:23] 2025-12-13 08:40:20,543 | INFO     | all job control threads have been joined
[2025-12-13 09:41:23] 2025-12-13 08:40:20,727 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 09:41:23] 2025-12-13 08:40:20,749 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 09:41:23] 2025-12-13 08:40:20,940 | INFO     | [job] job monitor thread has finished
[2025-12-13 09:41:23] 2025-12-13 08:40:20,941 | INFO     | [job] retrieve thread has finished
[2025-12-13 09:41:23] 2025-12-13 08:40:20,941 | INFO     | [job] queue monitor thread has finished
[2025-12-13 09:41:23] 2025-12-13 08:40:21,009 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 09:41:23] 2025-12-13 08:40:21,233 | INFO     | [data] copytool_in thread has finished
[2025-12-13 09:41:23] 2025-12-13 08:40:21,264 | INFO     | [payload] validate_post thread has finished
[2025-12-13 09:41:23] 2025-12-13 08:40:21,363 | INFO     | all payload control threads have been joined
[2025-12-13 09:41:23] 2025-12-13 08:40:21,547 | INFO     | [data] control thread has finished
[2025-12-13 09:41:23] 2025-12-13 08:40:21,549 | INFO     | [job] control thread has finished
[2025-12-13 09:41:23] 2025-12-13 08:40:22,093 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 09:41:23] 2025-12-13 08:40:22,170 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 09:41:23] 2025-12-13 08:40:22,337 | INFO     | [job] validate thread has finished
[2025-12-13 09:41:23] 2025-12-13 08:40:22,369 | INFO     | [payload] control thread has finished
[2025-12-13 09:41:23] 2025-12-13 08:40:22,435 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 09:41:23] 2025-12-13 08:40:22,473 | INFO     | [payload] failed_post thread has finished
[2025-12-13 09:41:23] 2025-12-13 08:40:22,755 | INFO     | [data] copytool_out thread has finished
[2025-12-13 09:41:23] 2025-12-13 08:40:24,734 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 09:41:23] 2025-12-13 08:40:50,967 | INFO     | PID=1456677 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-13 09:41:23] 2025-12-13 08:40:50,967 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 09:41:23] 2025-12-13 08:40:50,967 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 09:41:23] 2025-12-13 08:40:50,967 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 09:41:23] 2025-12-13 08:41:16,132 | INFO     | [monitor] cgroup control has ended
[2025-12-13 09:41:23] 2025-12-13 08:41:18,236 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140682032498496)>', '<ExcThread(monitor, started 140681091729152)>']
[2025-12-13 09:41:23] 2025-12-13 08:41:19,118 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 09:41:23] 2025-12-13 08:41:19,118 | INFO     | [monitor] control thread has ended
[2025-12-13 09:41:23] 2025-12-13 08:41:23,262 | INFO     | all workflow threads have been joined
[2025-12-13 09:41:23] 2025-12-13 08:41:23,262 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 09:41:23] 2025-12-13 08:41:23,263 | INFO     | traces error code: 0
[2025-12-13 09:41:23] 2025-12-13 08:41:23,263 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 09:41:23] 2025-12-13 08:41:23,331 [wrapper] ==== pilot stdout END ====
[2025-12-13 09:41:23] 2025-12-13 08:41:23,335 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 09:41:23] 2025-12-13 08:41:23,339 [wrapper] pilotpid: 1456677
[2025-12-13 09:41:23] 2025-12-13 08:41:23,342 [wrapper] Pilot exit status: 0
[2025-12-13 09:41:23] 2025-12-13 08:41:23,352 [wrapper] pandaids: 6929039974
[2025-12-13 09:41:23] 2025-12-13 08:41:23,374 [wrapper] cleanup supervisor_pilot 1456683 1456678
[2025-12-13 09:41:23] 2025-12-13 08:41:23,378 [wrapper] Test setup, not cleaning
[2025-12-13 09:41:23] 2025-12-13 08:41:23,381 [wrapper] apfmon messages muted
[2025-12-13 09:41:23] 2025-12-13 08:41:23,385 [wrapper] ==== wrapper stdout END ====
[2025-12-13 09:41:23] 2025-12-13 08:41:23,388 [wrapper] ==== wrapper stderr END ====
[2025-12-13 09:41:23]  *** Error codes and diagnostics ***
[2025-12-13 09:41:23]     "exeErrorCode": 65,
[2025-12-13 09:41:23]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-13 09:41:23]     "pilotErrorCode": 1305,
[2025-12-13 09:41:23]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-13 09:41:23]  *** Listing of results directory ***
[2025-12-13 09:41:23] total 192496
[2025-12-13 09:41:23] -rw-r--r-- 1 boinc boinc    579449 Dec 13 07:26 pilot3.tar.gz
[2025-12-13 09:41:23] -rw-r--r-- 1 boinc boinc      5112 Dec 13 07:49 queuedata.json
[2025-12-13 09:41:23] -rwx------ 1 boinc boinc     36322 Dec 13 07:49 runpilot2-wrapper.sh
[2025-12-13 09:41:23] -rw-r--r-- 1 boinc boinc       100 Dec 13 09:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 09:41:23] -rwxr-xr-x 1 boinc boinc      7986 Dec 13 09:37 run_atlas
[2025-12-13 09:41:23] -rw-r--r-- 1 boinc boinc       105 Dec 13 09:37 job.xml
[2025-12-13 09:41:23] -rw-r--r-- 2 boinc boinc 192972752 Dec 13 09:37 EVNT.47886829._000119.pool.root.1
[2025-12-13 09:41:23] drwxrwx--x 2 boinc boinc      4096 Dec 13 09:37 shared
[2025-12-13 09:41:23] -rw-r--r-- 2 boinc boinc    592416 Dec 13 09:37 input.tar.gz
[2025-12-13 09:41:23] -rw-r--r-- 2 boinc boinc     15847 Dec 13 09:37 start_atlas.sh
[2025-12-13 09:41:23] -rw-r--r-- 1 boinc boinc         0 Dec 13 09:37 boinc_setup_complete
[2025-12-13 09:41:23] -rw-r--r-- 1 boinc boinc      6368 Dec 13 09:37 init_data.xml
[2025-12-13 09:41:23] -rw-r--r-- 1 boinc boinc         0 Dec 13 09:37 boinc_lockfile
[2025-12-13 09:41:23] -rw-r--r-- 1 boinc boinc      2537 Dec 13 09:37 pandaJob.out
[2025-12-13 09:41:23] -rw------- 1 boinc boinc    991736 Dec 13 09:37 agis_schedconf.cvmfs.json
[2025-12-13 09:41:23] -rw------- 1 boinc boinc   1516240 Dec 13 09:37 agis_ddmendpoints.agis.ALL.json
[2025-12-13 09:41:23] drwx------ 5 boinc boinc      4096 Dec 13 09:37 pilot3
[2025-12-13 09:41:23] -rw-r--r-- 1 boinc boinc       523 Dec 13 09:38 boinc_task_state.xml
[2025-12-13 09:41:23] -rw------- 1 boinc boinc       955 Dec 13 09:38 memory_monitor_summary.json
[2025-12-13 09:41:23] -rw------- 1 boinc boinc     33957 Dec 13 09:38 log.47886831._002967.job.log.tgz.1
[2025-12-13 09:41:23] -rw------- 1 boinc boinc        95 Dec 13 09:40 pilot_heartbeat.json
[2025-12-13 09:41:23] -rw------- 1 boinc boinc      8332 Dec 13 09:40 heartbeat.json
[2025-12-13 09:41:23] -rw-r--r-- 1 boinc boinc      8192 Dec 13 09:41 boinc_mmap_file
[2025-12-13 09:41:23] -rw-r--r-- 1 boinc boinc        23 Dec 13 09:41 wrapper_checkpoint.txt
[2025-12-13 09:41:23] -rw------- 1 boinc boinc      4752 Dec 13 09:41 pilotlog.txt
[2025-12-13 09:41:23] -rw------- 1 boinc boinc     85693 Dec 13 09:41 log.47886831._002967.job.log.1
[2025-12-13 09:41:23] -rw------- 1 boinc boinc       188 Dec 13 09:41 output.list
[2025-12-13 09:41:23] -rw-r--r-- 1 boinc boinc       620 Dec 13 09:41 runtime_log
[2025-12-13 09:41:23] -rw------- 1 boinc boinc    143360 Dec 13 09:41 result.tar.gz
[2025-12-13 09:41:23] -rw------- 1 boinc boinc       648 Dec 13 09:41 zC5LDmzcYo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmT3RKDm6bzQln.diag
[2025-12-13 09:41:23] -rw-r--r-- 1 boinc boinc      8744 Dec 13 09:41 runtime_log.err
[2025-12-13 09:41:23] -rw-r--r-- 1 boinc boinc      7212 Dec 13 09:41 stderr.txt
[2025-12-13 09:41:23] No HITS result produced
[2025-12-13 09:41:23]  *** Contents of shared directory: ***
[2025-12-13 09:41:23] total 189192
[2025-12-13 09:41:23] -rw-r--r-- 2 boinc boinc 192972752 Dec 13 09:37 ATLAS.root_0
[2025-12-13 09:41:23] -rw-r--r-- 2 boinc boinc    592416 Dec 13 09:37 input.tar.gz
[2025-12-13 09:41:23] -rw-r--r-- 2 boinc boinc     15847 Dec 13 09:37 start_atlas.sh
[2025-12-13 09:41:23] -rw------- 1 boinc boinc    143360 Dec 13 09:41 result.tar.gz
09:41:24 (1452896): run_atlas exited; CPU time 28.219398
09:41:24 (1452896): called boinc_finish(0)

</stderr_txt>
]]>

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