Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:10:18 (2558615): wrapper (7.7.26015): starting
10:10:18 (2558615): wrapper: running run_atlas (--nthreads 4)
[2025-12-14 10:10:18] Arguments: --nthreads 4
[2025-12-14 10:10:18] Threads: 4
[2025-12-14 10:10:18] Checking for CVMFS
[2025-12-14 10:10:18] No cvmfs_config command found, will try listing directly
[2025-12-14 10:10:18] CVMFS is ok
[2025-12-14 10:10:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 10:10:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 10:10:18] Further information can be found at the LHC@home message board.
[2025-12-14 10:10:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 10:10:18] Checking for apptainer binary...
[2025-12-14 10:10:18] which: no apptainer in ((null))
[2025-12-14 10:10:18] apptainer is not installed, using version from CVMFS
[2025-12-14 10:10:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 10:10:18] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2025-12-14 10:10:18] apptainer works
[2025-12-14 10:10:18] Set ATHENA_PROC_NUMBER=4
[2025-12-14 10:10:18] Set ATHENA_CORE_NUMBER=4
[2025-12-14 10:10:18] Starting ATLAS job with PandaID=6929031519
[2025-12-14 10:10:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:29:21 (2891708): wrapper (7.7.26015): starting
12:29:21 (2891708): wrapper: running run_atlas (--nthreads 4)
[2025-12-14 12:29:21] Arguments: --nthreads 4
[2025-12-14 12:29:21] Threads: 4
[2025-12-14 12:29:21] This job has been restarted, cleaning up previous attempt
[2025-12-14 12:29:21] Checking for CVMFS
[2025-12-14 12:29:21] No cvmfs_config command found, will try listing directly
[2025-12-14 12:29:21] CVMFS is ok
[2025-12-14 12:29:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 12:29:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 12:29:21] Further information can be found at the LHC@home message board.
[2025-12-14 12:29:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 12:29:21] Checking for apptainer binary...
[2025-12-14 12:29:21] which: no apptainer in ((null))
[2025-12-14 12:29:21] apptainer is not installed, using version from CVMFS
[2025-12-14 12:29:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 12:29:22] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2025-12-14 12:29:22] apptainer works
[2025-12-14 12:29:22] Set ATHENA_PROC_NUMBER=4
[2025-12-14 12:29:22] Set ATHENA_CORE_NUMBER=4
[2025-12-14 12:29:22] Starting ATLAS job with PandaID=6929031519
[2025-12-14 12:29:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 16:23:01]  *** The last 200 lines of the pilot log: ***
[2025-12-14 16:23:01] 2025-12-14 15:19:41,773 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 16:23:01] 2025-12-14 15:19:42,381 | INFO     | time since job start (13805s) is within the limit (174528.0s)
[2025-12-14 16:23:01] 2025-12-14 15:19:44,276 | INFO     | monitor loop #938: job 0:6929031519 is in state 'finished'
[2025-12-14 16:23:01] 2025-12-14 15:19:44,276 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 16:23:01] 2025-12-14 15:19:44,386 | INFO     | time since job start (13807s) is within the limit (174528.0s)
[2025-12-14 16:23:01] 2025-12-14 15:19:46,392 | INFO     | time since job start (13809s) is within the limit (174528.0s)
[2025-12-14 16:23:01] 2025-12-14 15:19:46,779 | INFO     | monitor loop #939: job 0:6929031519 is in state 'finished'
[2025-12-14 16:23:01] 2025-12-14 15:19:46,779 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 16:23:01] 2025-12-14 15:19:47,317 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-14 16:23:01] 2025-12-14 15:19:47,339 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2701.517359375001
[2025-12-14 16:23:01] 2025-12-14 15:19:47,364 | INFO     | using path: /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6929031519/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 16:23:01] 2025-12-14 15:19:47,365 | INFO     | extracted standard info from prmon json
[2025-12-14 16:23:01] 2025-12-14 15:19:47,365 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 16:23:01] 2025-12-14 15:19:47,365 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 16:23:01] 2025-12-14 15:19:47,365 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 16:23:01] 2025-12-14 15:19:47,365 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 16:23:01] 2025-12-14 15:19:47,370 | INFO     | fitting pss+swap vs Time
[2025-12-14 16:23:01] 2025-12-14 15:19:47,370 | INFO     | sum of square deviations: 3579276412.5
[2025-12-14 16:23:01] 2025-12-14 15:19:47,372 | INFO     | sum of deviations: -6075762046.499998
[2025-12-14 16:23:01] 2025-12-14 15:19:47,372 | INFO     | mean x: 1765718674.5
[2025-12-14 16:23:01] 2025-12-14 15:19:47,372 | INFO     | mean y: 2344858.1725663715
[2025-12-14 16:23:01] 2025-12-14 15:19:47,372 | INFO     | intersect: 2999622874.996696
[2025-12-14 16:23:01] 2025-12-14 15:19:47,372 | INFO     | chi2: 1.2519965449847066
[2025-12-14 16:23:01] 2025-12-14 15:19:47,373 | INFO     | sum of square deviations: 3346927870.0
[2025-12-14 16:23:01] 2025-12-14 15:19:47,374 | INFO     | sum of deviations: -6037769935.000003
[2025-12-14 16:23:01] 2025-12-14 15:19:47,374 | INFO     | mean x: 1765718522.0
[2025-12-14 16:23:01] 2025-12-14 15:19:47,375 | INFO     | mean y: 2344885.1764705884
[2025-12-14 16:23:01] 2025-12-14 15:19:47,375 | INFO     | intersect: 3187654703.5814433
[2025-12-14 16:23:01] 2025-12-14 15:19:47,375 | INFO     | chi2: 1.2512846640734394
[2025-12-14 16:23:01] 2025-12-14 15:19:47,375 | INFO     | current chi2=1.2512846640734394 (change=0.05685965461477106 %)
[2025-12-14 16:23:01] 2025-12-14 15:19:47,375 | INFO     | right removable region: 220
[2025-12-14 16:23:01] 2025-12-14 15:19:47,376 | INFO     | sum of square deviations: 3346927870.0
[2025-12-14 16:23:01] 2025-12-14 15:19:47,377 | INFO     | sum of deviations: -29872006951.999992
[2025-12-14 16:23:01] 2025-12-14 15:19:47,377 | INFO     | mean x: 1765718827.0
[2025-12-14 16:23:01] 2025-12-14 15:19:47,377 | INFO     | mean y: 2360259.954751131
[2025-12-14 16:23:01] 2025-12-14 15:19:47,377 | INFO     | intersect: 15761757272.421972
[2025-12-14 16:23:01] 2025-12-14 15:19:47,378 | INFO     | chi2: 0.06629072475234772
[2025-12-14 16:23:01] 2025-12-14 15:19:47,378 | INFO     | current chi2=0.06629072475234772 (change=94.70519906641137 %)
[2025-12-14 16:23:01] 2025-12-14 15:19:47,378 | INFO     | sum of square deviations: 3124858590.0
[2025-12-14 16:23:01] 2025-12-14 15:19:47,380 | INFO     | sum of deviations: -27037920447.5
[2025-12-14 16:23:01] 2025-12-14 15:19:47,380 | INFO     | mean x: 1765718979.5
[2025-12-14 16:23:01] 2025-12-14 15:19:47,380 | INFO     | mean y: 2358300.967592593
[2025-12-14 16:23:01] 2025-12-14 15:19:47,380 | INFO     | intersect: 15280287821.727724
[2025-12-14 16:23:01] 2025-12-14 15:19:47,380 | INFO     | chi2: 0.06330085629066994
[2025-12-14 16:23:01] 2025-12-14 15:19:47,381 | INFO     | current chi2=0.06330085629066994 (change=4.510236496655437 %)
[2025-12-14 16:23:01] 2025-12-14 15:19:47,381 | INFO     | left removable region: 20
[2025-12-14 16:23:01] 2025-12-14 15:19:47,381 | INFO     | sum of square deviations: 2480604650.0
[2025-12-14 16:23:01] 2025-12-14 15:19:47,382 | INFO     | sum of deviations: -17690271998.999996
[2025-12-14 16:23:01] 2025-12-14 15:19:47,383 | INFO     | mean x: 1765719101.5
[2025-12-14 16:23:01] 2025-12-14 15:19:47,383 | INFO     | mean y: 2351931.06
[2025-12-14 16:23:01] 2025-12-14 15:19:47,383 | INFO     | intersect: 12594463769.343008
[2025-12-14 16:23:01] 2025-12-14 15:19:47,383 | INFO     | chi2: 0.04701421920164808
[2025-12-14 16:23:01] 2025-12-14 15:19:47,383 | INFO     | current memory leak: -7.13 B/s (using 200 data points, chi2=0.05)
[2025-12-14 16:23:01] 2025-12-14 15:19:47,384 | INFO     | could have reported an average CPU frequency of 2701 MHz (11 samples)
[2025-12-14 16:23:01] 2025-12-14 15:19:47,384 | INFO     | ..............................
[2025-12-14 16:23:01] 2025-12-14 15:19:47,384 | INFO     | . Timing measurements:
[2025-12-14 16:23:01] 2025-12-14 15:19:47,384 | INFO     | . get job = 0 s
[2025-12-14 16:23:01] 2025-12-14 15:19:47,384 | INFO     | . initial setup = 1 s
[2025-12-14 16:23:01] 2025-12-14 15:19:47,384 | INFO     | . payload setup = 9 s
[2025-12-14 16:23:01] 2025-12-14 15:19:47,384 | INFO     | . stage-in = 0 s
[2025-12-14 16:23:01] 2025-12-14 15:19:47,384 | INFO     | . payload execution = 13766 s
[2025-12-14 16:23:01] 2025-12-14 15:19:47,384 | INFO     | . stage-out = 1 s
[2025-12-14 16:23:01] 2025-12-14 15:19:47,384 | INFO     | . log creation = 0 s
[2025-12-14 16:23:01] 2025-12-14 15:19:47,385 | INFO     | ..............................
[2025-12-14 16:23:01] 2025-12-14 15:19:47,483 | INFO     | 
[2025-12-14 16:23:01] 2025-12-14 15:19:47,484 | INFO     | job summary report
[2025-12-14 16:23:01] 2025-12-14 15:19:47,484 | INFO     | --------------------------------------------------
[2025-12-14 16:23:01] 2025-12-14 15:19:47,484 | INFO     | PanDA job id: 6929031519
[2025-12-14 16:23:01] 2025-12-14 15:19:47,484 | INFO     | task id: 47898763
[2025-12-14 16:23:01] 2025-12-14 15:19:47,484 | INFO     | errors: (none)
[2025-12-14 16:23:01] 2025-12-14 15:19:47,484 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 16:23:01] 2025-12-14 15:19:47,484 | INFO     | pilot state: finished 
[2025-12-14 16:23:01] 2025-12-14 15:19:47,484 | INFO     | transexitcode: 0
[2025-12-14 16:23:01] 2025-12-14 15:19:47,484 | INFO     | exeerrorcode: 0
[2025-12-14 16:23:01] 2025-12-14 15:19:47,484 | INFO     | exeerrordiag: 
[2025-12-14 16:23:01] 2025-12-14 15:19:47,485 | INFO     | exitcode: 0
[2025-12-14 16:23:01] 2025-12-14 15:19:47,485 | INFO     | exitmsg: OK
[2025-12-14 16:23:01] 2025-12-14 15:19:47,485 | INFO     | cpuconsumptiontime: 53415 s
[2025-12-14 16:23:01] 2025-12-14 15:19:47,485 | INFO     | nevents: 400
[2025-12-14 16:23:01] 2025-12-14 15:19:47,485 | INFO     | neventsw: 0
[2025-12-14 16:23:01] 2025-12-14 15:19:47,485 | INFO     | pid: 2908559
[2025-12-14 16:23:01] 2025-12-14 15:19:47,485 | INFO     | pgrp: 2908559
[2025-12-14 16:23:01] 2025-12-14 15:19:47,485 | INFO     | corecount: 4
[2025-12-14 16:23:01] 2025-12-14 15:19:47,485 | INFO     | event service: False
[2025-12-14 16:23:01] 2025-12-14 15:19:47,485 | INFO     | sizes: {0: 2283952, 7: 2284214, 11: 2284242, 13779: 2315260, 13781: 2324282, 13784: 2324338, 13792: 2324660}
[2025-12-14 16:23:01] 2025-12-14 15:19:47,485 | INFO     | --------------------------------------------------
[2025-12-14 16:23:01] 2025-12-14 15:19:47,485 | INFO     | 
[2025-12-14 16:23:01] 2025-12-14 15:19:47,486 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/0
[2025-12-14 16:23:01] 2025-12-14 15:19:47,519 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 16:23:01] 2025-12-14 15:19:47,520 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 16:23:01] 2025-12-14 15:19:47,520 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 16:23:01] 2025-12-14 15:19:47,520 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 16:23:01] 2025-12-14 15:19:47,520 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 16:23:01] 2025-12-14 15:19:47,520 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 16:23:01] 2025-12-14 15:19:47,520 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 16:23:01] 2025-12-14 15:19:47,520 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 16:23:01] 2025-12-14 15:19:47,521 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 16:23:01] 2025-12-14 15:19:47,521 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 16:23:01] 2025-12-14 15:19:47,521 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 16:23:01] 2025-12-14 15:19:47,521 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 16:23:01] 2025-12-14 15:19:47,521 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 16:23:01] 2025-12-14 15:19:47,521 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 16:23:01] 2025-12-14 15:19:47,521 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 16:23:01] 2025-12-14 15:19:47,521 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 16:23:01] 2025-12-14 15:19:47,521 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 16:23:01] 2025-12-14 15:19:47,521 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 16:23:01] 2025-12-14 15:19:47,521 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 16:23:01] 2025-12-14 15:19:47,521 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 16:23:01] 2025-12-14 15:19:47,522 | INFO     | job 6929031519 has completed (purged errors)
[2025-12-14 16:23:01] 2025-12-14 15:19:47,522 | INFO     | overall cleanup function is called
[2025-12-14 16:23:01] 2025-12-14 15:19:48,531 | INFO     | --- collectZombieJob: --- 10, [2908559]
[2025-12-14 16:23:01] 2025-12-14 15:19:48,531 | INFO     | zombie collector waiting for pid 2908559
[2025-12-14 16:23:01] 2025-12-14 15:19:48,531 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 16:23:01] 2025-12-14 15:19:48,531 | INFO     | collected zombie processes
[2025-12-14 16:23:01] 2025-12-14 15:19:48,531 | INFO     | will attempt to kill all subprocesses of pid=2908559
[2025-12-14 16:23:01] 2025-12-14 15:19:49,332 | INFO     | process IDs to be killed: [2908559] (in reverse order)
[2025-12-14 16:23:01] 2025-12-14 15:19:49,601 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 16:23:01] 2025-12-14 15:19:49,602 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 16:23:01] 2025-12-14 15:19:49,632 | INFO     | did not find any defunct processes belonging to 2908559
[2025-12-14 16:23:01] 2025-12-14 15:19:49,660 | INFO     | did not find any defunct processes belonging to 2908559
[2025-12-14 16:23:01] 2025-12-14 15:19:49,660 | INFO     | ready for new job
[2025-12-14 16:23:01] 2025-12-14 15:19:49,661 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 16:23:01] 2025-12-14 15:19:49,664 | INFO     | ***************************************
[2025-12-14 16:23:01] 2025-12-14 15:19:49,664 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 16:23:01] 2025-12-14 15:19:49,664 | INFO     | ***************************************
[2025-12-14 16:23:01] 2025-12-14 15:19:49,664 | INFO     | 
[2025-12-14 16:23:01] 2025-12-14 15:19:49,672 | INFO     | architecture information:
[2025-12-14 16:23:01] 2025-12-14 15:19:49,672 | INFO     | executing command: cat /etc/os-release
[2025-12-14 16:23:01] 2025-12-14 15:19:49,698 | INFO     | cat /etc/os-release:
[2025-12-14 16:23:01] NAME="CentOS Linux"
[2025-12-14 16:23:01] VERSION="7 (Core)"
[2025-12-14 16:23:01] ID="centos"
[2025-12-14 16:23:01] ID_LIKE="rhel fedora"
[2025-12-14 16:23:01] VERSION_ID="7"
[2025-12-14 16:23:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 16:23:01] ANSI_COLOR="0;31"
[2025-12-14 16:23:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 16:23:01] HOME_URL="https://www.centos.org/"
[2025-12-14 16:23:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 16:23:01] 
[2025-12-14 16:23:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 16:23:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 16:23:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 16:23:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 16:23:01] 
[2025-12-14 16:23:01] 2025-12-14 15:19:49,698 | INFO     | ***************************************
[2025-12-14 16:23:01] 2025-12-14 15:19:50,204 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/0
[2025-12-14 16:23:01] 2025-12-14 15:19:50,232 | INFO     | sufficient remaining disk space (3315240796160 B)
[2025-12-14 16:23:01] 2025-12-14 15:19:50,232 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 16:23:01] 2025-12-14 15:19:50,233 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 16:23:01] 2025-12-14 15:19:50,233 | INFO     | update_server=False
[2025-12-14 16:23:01] 2025-12-14 15:19:50,233 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 16:23:01] 2025-12-14 15:19:50,233 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 16:23:01] 2025-12-14 15:19:50,234 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 16:23:01] 2025-12-14 15:19:50,288 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 16:23:01] 2025-12-14 15:19:50,288 | INFO     | aborting loop
[2025-12-14 16:23:01] 2025-12-14 15:19:50,839 | INFO     | all data control threads have been joined
[2025-12-14 16:23:01] 2025-12-14 15:19:51,238 | INFO     | [job] retrieve thread has finished
[2025-12-14 16:23:01] 2025-12-14 15:19:51,293 | INFO     | [job] job monitor thread has finished
[2025-12-14 16:23:01] 2025-12-14 15:19:51,504 | INFO     | all job control threads have been joined
[2025-12-14 16:23:01] 2025-12-14 15:19:51,618 | INFO     | all payload control threads have been joined
[2025-12-14 16:23:01] 2025-12-14 15:19:51,655 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 16:23:01] 2025-12-14 15:19:51,845 | INFO     | [data] control thread has finished
[2025-12-14 16:23:01] 2025-12-14 15:19:51,958 | INFO     | [payload] validate_post thread has finished
[2025-12-14 16:23:01] 2025-12-14 15:19:52,010 | INFO     | [data] copytool_in thread has finished
[2025-12-14 16:23:01] 2025-12-14 15:19:52,239 | INFO     | [data] copytool_out thread has finished
[2025-12-14 16:23:01] 2025-12-14 15:19:52,348 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 16:23:01] 2025-12-14 15:19:52,463 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 16:23:01] 2025-12-14 15:19:52,492 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 16:23:01] 2025-12-14 15:19:52,494 | INFO     | [job] validate thread has finished
[2025-12-14 16:23:01] 2025-12-14 15:19:52,509 | INFO     | [job] control thread has finished
[2025-12-14 16:23:01] 2025-12-14 15:19:52,515 | INFO     | [payload] failed_post thread has finished
[2025-12-14 16:23:01] 2025-12-14 15:19:52,623 | INFO     | [payload] control thread has finished
[2025-12-14 16:23:01] 2025-12-14 15:19:53,493 | INFO     | [job] queue monitor thread has finished
[2025-12-14 16:23:01] 2025-12-14 15:19:54,239 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 16:23:01] 2025-12-14 15:19:59,166 | INFO     | [monitor] cgroup control has ended
[2025-12-14 16:23:01] 2025-12-14 15:20:01,188 | INFO     | job.realtimelogging is not enabled
[2025-12-14 16:23:01] 2025-12-14 15:20:02,193 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 16:23:01] 2025-12-14 15:20:02,544 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23183604340544)>', '<ExcThread(monitor, started 23183373604608)>']
[2025-12-14 16:23:01] 2025-12-14 15:20:07,575 | INFO     | all workflow threads have been joined
[2025-12-14 16:23:01] 2025-12-14 15:20:07,575 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 16:23:01] 2025-12-14 15:20:07,575 | INFO     | traces error code: 0
[2025-12-14 16:23:01] 2025-12-14 15:20:07,576 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 16:23:01] 2025-12-14 15:20:20,417 | INFO     | PID=2896024 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 16:23:01] 2025-12-14 15:20:20,418 | INFO     | .. there are 9 such processes running
[2025-12-14 16:23:01] 2025-12-14 15:20:20,419 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 16:23:01] 2025-12-14 15:20:20,419 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 16:23:01] 2025-12-14 15:20:20,419 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 16:23:01] 2025-12-14 15:20:20,419 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 16:23:01] 2025-12-14 15:20:20,419 | INFO     | [monitor] control thread has ended
[2025-12-14 16:23:01] 2025-12-14 15:20:20,635 [wrapper] ==== pilot stdout END ====
[2025-12-14 16:23:01] 2025-12-14 15:20:20,639 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 16:23:01] 2025-12-14 15:20:20,643 [wrapper] pilotpid: 2896024
[2025-12-14 16:23:01] 2025-12-14 15:20:20,647 [wrapper] Pilot exit status: 0
[2025-12-14 16:23:01] 2025-12-14 15:20:20,664 [wrapper] pandaids: 6929031519 6929031519
[2025-12-14 16:23:01] 2025-12-14 15:20:20,830 [wrapper] cleanup supervisor_pilot 3353554 2896025
[2025-12-14 16:23:01] 2025-12-14 15:20:20,834 [wrapper] Test setup, not cleaning
[2025-12-14 16:23:01] 2025-12-14 15:20:20,839 [wrapper] apfmon messages muted
[2025-12-14 16:23:01] 2025-12-14 15:20:20,843 [wrapper] ==== wrapper stdout END ====
[2025-12-14 16:23:01] 2025-12-14 15:20:20,847 [wrapper] ==== wrapper stderr END ====
[2025-12-14 16:23:01]  *** Error codes and diagnostics ***
[2025-12-14 16:23:01]     "exeErrorCode": 0,
[2025-12-14 16:23:01]     "exeErrorDiag": "",
[2025-12-14 16:23:01]     "pilotErrorCode": 0,
[2025-12-14 16:23:01]     "pilotErrorDiag": "",
[2025-12-14 16:23:01]  *** Listing of results directory ***
[2025-12-14 16:23:01] total 659840
[2025-12-14 16:23:01] drwx------ 5 boinc boinc      4096 Dec  3 15:30 pilot3
[2025-12-14 16:23:01] -rw-r--r-- 1 boinc boinc    579449 Dec 13 07:26 pilot3.tar.gz
[2025-12-14 16:23:01] -rw-r--r-- 1 boinc boinc      5112 Dec 13 07:29 queuedata.json
[2025-12-14 16:23:01] -rwx------ 1 boinc boinc     36322 Dec 13 07:29 runpilot2-wrapper.sh
[2025-12-14 16:23:01] -rw-r--r-- 1 boinc boinc       100 Dec 14 10:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 16:23:01] -rwxr-xr-x 1 boinc boinc      7986 Dec 14 10:10 run_atlas
[2025-12-14 16:23:01] -rw-r--r-- 1 boinc boinc       105 Dec 14 10:10 job.xml
[2025-12-14 16:23:01] -rw-r--r-- 3 boinc boinc 223466460 Dec 14 10:10 EVNT.47898761._000005.pool.root.1
[2025-12-14 16:23:01] -rw-r--r-- 3 boinc boinc 223466460 Dec 14 10:10 ATLAS.root_0
[2025-12-14 16:23:01] drwxrwx--x 2 boinc boinc      4096 Dec 14 10:10 shared
[2025-12-14 16:23:01] -rw-r--r-- 2 boinc boinc    592384 Dec 14 10:10 input.tar.gz
[2025-12-14 16:23:01] -rw-r--r-- 2 boinc boinc     15847 Dec 14 10:10 start_atlas.sh
[2025-12-14 16:23:01] -rw-r--r-- 1 boinc boinc         0 Dec 14 10:10 boinc_lockfile
[2025-12-14 16:23:01] -rw-r--r-- 1 boinc boinc      2498 Dec 14 12:29 pandaJob.out
[2025-12-14 16:23:01] -rw------- 1 boinc boinc    991728 Dec 14 12:29 agis_schedconf.cvmfs.json
[2025-12-14 16:23:01] -rw-r--r-- 1 boinc boinc      6699 Dec 14 16:11 init_data.xml
[2025-12-14 16:23:01] -rw------- 1 boinc boinc 220208766 Dec 14 16:18 HITS.47898763._000065.pool.root.1
[2025-12-14 16:23:01] -rw-r--r-- 1 boinc boinc       529 Dec 14 16:18 boinc_task_state.xml
[2025-12-14 16:23:01] -rw------- 1 boinc boinc      1034 Dec 14 16:19 memory_monitor_summary.json
[2025-12-14 16:23:01] -rw------- 1 boinc boinc   1516240 Dec 14 16:19 agis_ddmendpoints.agis.ALL.json
[2025-12-14 16:23:01] -rw------- 1 boinc boinc    401364 Dec 14 16:19 log.47898763._000065.job.log.tgz.1
[2025-12-14 16:23:01] -rw------- 1 boinc boinc      7784 Dec 14 16:19 heartbeat.json
[2025-12-14 16:23:01] -rw------- 1 boinc boinc        97 Dec 14 16:20 pilot_heartbeat.json
[2025-12-14 16:23:01] -rw------- 1 boinc boinc       822 Dec 14 16:20 pilotlog.txt
[2025-12-14 16:23:01] -rw------- 1 boinc boinc   1907688 Dec 14 16:20 log.47898763._000065.job.log.1
[2025-12-14 16:23:01] -rw------- 1 boinc boinc       357 Dec 14 16:20 output.list
[2025-12-14 16:23:01] -rw-r--r-- 1 boinc boinc       620 Dec 14 16:20 runtime_log
[2025-12-14 16:23:01] -rw------- 1 boinc boinc   2324480 Dec 14 16:20 result.tar.gz
[2025-12-14 16:23:01] -rw-r--r-- 1 boinc boinc      9300 Dec 14 16:20 runtime_log.err
[2025-12-14 16:23:01] -rw------- 1 boinc boinc       791 Dec 14 16:20 fwMNDmMJYo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXwRKDmgHeJxm.diag
[2025-12-14 16:23:01] -rw-r--r-- 1 boinc boinc        27 Dec 14 16:22 wrapper_checkpoint.txt
[2025-12-14 16:23:01] -rw-r--r-- 1 boinc boinc      8192 Dec 14 16:23 boinc_mmap_file
[2025-12-14 16:23:01] -rw-r--r-- 1 boinc boinc     23023 Dec 14 16:23 stderr.txt
[2025-12-14 16:23:01] HITS file was successfully produced:
[2025-12-14 16:23:01] -rw------- 1 boinc boinc 220208766 Dec 14 16:18 shared/HITS.pool.root.1
[2025-12-14 16:23:01]  *** Contents of shared directory: ***
[2025-12-14 16:23:01] total 436156
[2025-12-14 16:23:01] -rw-r--r-- 3 boinc boinc 223466460 Dec 14 10:10 ATLAS.root_0
[2025-12-14 16:23:01] -rw-r--r-- 2 boinc boinc    592384 Dec 14 10:10 input.tar.gz
[2025-12-14 16:23:01] -rw-r--r-- 2 boinc boinc     15847 Dec 14 10:10 start_atlas.sh
[2025-12-14 16:23:01] -rw------- 1 boinc boinc 220208766 Dec 14 16:18 HITS.pool.root.1
[2025-12-14 16:23:01] -rw------- 1 boinc boinc   2324480 Dec 14 16:20 result.tar.gz
16:23:02 (2891708): run_atlas exited; CPU time 54375.619984
16:23:02 (2891708): called boinc_finish(0)

</stderr_txt>
]]>

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