Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:17:56 (442577): wrapper (7.7.26015): starting
12:17:56 (442577): wrapper: running run_atlas (--nthreads 4)
[2025-12-13 12:17:56] Arguments: --nthreads 4
[2025-12-13 12:17:56] Threads: 4
[2025-12-13 12:17:56] Checking for CVMFS
[2025-12-13 12:17:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 12:17:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 12:17:56] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 12:17:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 12:17:57] 2.9.2.0 362371 268 62164 153959 0 56 19649362 36864001 0 130560 0 208355 99.985 13690 17417 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-13 12:17:57] CVMFS is ok
[2025-12-13 12:17:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 12:17:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 12:17:57] Further information can be found at the LHC@home message board.
[2025-12-13 12:17:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 12:17:57] Checking for apptainer binary...
[2025-12-13 12:17:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 12:17:57] Running /usr/bin/apptainer --version
[2025-12-13 12:17:57] apptainer version 1.4.1-1.1
[2025-12-13 12:17:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 12:17:57] thA319a
[2025-12-13 12:17:57] apptainer works
[2025-12-13 12:17:57] Set ATHENA_PROC_NUMBER=4
[2025-12-13 12:17:57] Set ATHENA_CORE_NUMBER=4
[2025-12-13 12:17:57] Starting ATLAS job with PandaID=6929041533
[2025-12-13 12:17:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 13:31:16]  *** The last 200 lines of the pilot log: ***
[2025-12-13 13:31:16] 2025-12-13 12:30:42,326 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 13:31:16] 2025-12-13 12:30:42,326 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 13:31:16] 2025-12-13 12:30:42,326 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 13:31:16] 2025-12-13 12:30:42,326 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 13:31:16] 2025-12-13 12:30:42,326 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 13:31:16] 2025-12-13 12:30:42,326 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 13:31:16] 2025-12-13 12:30:42,326 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 13:31:16] 2025-12-13 12:30:42,326 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 13:31:16] 2025-12-13 12:30:42,326 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 13:31:16] 2025-12-13 12:30:42,326 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 13:31:16] 2025-12-13 12:30:42,326 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 13:31:16] 2025-12-13 12:30:42,326 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 13:31:16] 2025-12-13 12:30:42,326 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 13:31:16] 2025-12-13 12:30:42,326 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 13:31:16] 2025-12-13 12:30:42,326 | INFO     | job 6929041533 has completed (purged errors)
[2025-12-13 13:31:16] 2025-12-13 12:30:42,326 | INFO     | overall cleanup function is called
[2025-12-13 13:31:16] 2025-12-13 12:30:43,333 | INFO     | --- collectZombieJob: --- 10, [452938]
[2025-12-13 13:31:16] 2025-12-13 12:30:43,334 | INFO     | zombie collector waiting for pid 452938
[2025-12-13 13:31:16] 2025-12-13 12:30:43,334 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 13:31:16] 2025-12-13 12:30:43,334 | INFO     | collected zombie processes
[2025-12-13 13:31:16] 2025-12-13 12:30:43,334 | INFO     | will attempt to kill all subprocesses of pid=452938
[2025-12-13 13:31:16] 2025-12-13 12:30:43,379 | INFO     | process IDs to be killed: [452938] (in reverse order)
[2025-12-13 13:31:16] 2025-12-13 12:30:43,412 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 13:31:16] 2025-12-13 12:30:43,412 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 13:31:16] 2025-12-13 12:30:43,414 | INFO     | did not find any defunct processes belonging to 452938
[2025-12-13 13:31:16] 2025-12-13 12:30:43,415 | INFO     | did not find any defunct processes belonging to 452938
[2025-12-13 13:31:16] 2025-12-13 12:30:43,415 | INFO     | ready for new job
[2025-12-13 13:31:16] 2025-12-13 12:30:43,415 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 13:31:16] 2025-12-13 12:30:43,416 | INFO     | ***************************************
[2025-12-13 13:31:16] 2025-12-13 12:30:43,416 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 13:31:16] 2025-12-13 12:30:43,416 | INFO     | ***************************************
[2025-12-13 13:31:16] 2025-12-13 12:30:43,416 | INFO     | 
[2025-12-13 13:31:16] 2025-12-13 12:30:43,417 | INFO     | architecture information:
[2025-12-13 13:31:16] 2025-12-13 12:30:43,417 | INFO     | executing command: cat /etc/os-release
[2025-12-13 13:31:16] 2025-12-13 12:30:43,431 | INFO     | cat /etc/os-release:
[2025-12-13 13:31:16] NAME="CentOS Linux"
[2025-12-13 13:31:16] VERSION="7 (Core)"
[2025-12-13 13:31:16] ID="centos"
[2025-12-13 13:31:16] ID_LIKE="rhel fedora"
[2025-12-13 13:31:16] VERSION_ID="7"
[2025-12-13 13:31:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 13:31:16] ANSI_COLOR="0;31"
[2025-12-13 13:31:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 13:31:16] HOME_URL="https://www.centos.org/"
[2025-12-13 13:31:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 13:31:16] 
[2025-12-13 13:31:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 13:31:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 13:31:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 13:31:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 13:31:16] 
[2025-12-13 13:31:16] 2025-12-13 12:30:43,431 | INFO     | ***************************************
[2025-12-13 13:31:16] 2025-12-13 12:30:43,934 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-13 13:31:16] 2025-12-13 12:30:43,951 | INFO     | sufficient remaining disk space (341437317120 B)
[2025-12-13 13:31:16] 2025-12-13 12:30:43,951 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 13:31:16] 2025-12-13 12:30:43,951 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 13:31:16] 2025-12-13 12:30:43,951 | INFO     | update_server=False
[2025-12-13 13:31:16] 2025-12-13 12:30:43,951 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 13:31:16] 2025-12-13 12:30:43,952 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 13:31:16] 2025-12-13 12:30:43,952 | INFO     | aborting loop
[2025-12-13 13:31:16] 2025-12-13 12:30:43,952 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 13:31:16] 2025-12-13 12:30:43,952 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 13:31:16] 2025-12-13 12:30:44,063 | INFO     | all data control threads have been joined
[2025-12-13 13:31:16] 2025-12-13 12:30:44,610 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 13:31:16] 2025-12-13 12:30:44,957 | INFO     | [job] retrieve thread has finished
[2025-12-13 13:31:16] 2025-12-13 12:30:44,957 | INFO     | [job] job monitor thread has finished
[2025-12-13 13:31:16] 2025-12-13 12:30:44,958 | INFO     | [job] queue monitor thread has finished
[2025-12-13 13:31:16] 2025-12-13 12:30:44,977 | INFO     | [data] copytool_in thread has finished
[2025-12-13 13:31:16] 2025-12-13 12:30:45,056 | INFO     | [payload] failed_post thread has finished
[2025-12-13 13:31:16] 2025-12-13 12:30:45,068 | INFO     | [data] control thread has finished
[2025-12-13 13:31:16] 2025-12-13 12:30:45,237 | INFO     | all payload control threads have been joined
[2025-12-13 13:31:16] 2025-12-13 12:30:45,408 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 13:31:16] 2025-12-13 12:30:45,558 | INFO     | [payload] validate_post thread has finished
[2025-12-13 13:31:16] 2025-12-13 12:30:45,608 | INFO     | all job control threads have been joined
[2025-12-13 13:31:16] 2025-12-13 12:30:45,738 | INFO     | [job] validate thread has finished
[2025-12-13 13:31:16] 2025-12-13 12:30:45,790 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 13:31:16] 2025-12-13 12:30:45,941 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 13:31:16] 2025-12-13 12:30:46,240 | INFO     | [payload] control thread has finished
[2025-12-13 13:31:16] 2025-12-13 12:30:46,402 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 13:31:16] 2025-12-13 12:30:46,614 | INFO     | [job] control thread has finished
[2025-12-13 13:31:16] 2025-12-13 12:30:46,616 | INFO     | [data] copytool_out thread has finished
[2025-12-13 13:31:16] 2025-12-13 12:30:47,959 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 13:31:16] 2025-12-13 12:31:10,583 | INFO     | [monitor] cgroup control has ended
[2025-12-13 13:31:16] 2025-12-13 12:31:11,722 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140220314703680)>', '<ExcThread(monitor, started 140218938160896)>']
[2025-12-13 13:31:16] 2025-12-13 12:31:14,234 | INFO     | PID=446372 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-13 13:31:16] 2025-12-13 12:31:14,234 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 13:31:16] 2025-12-13 12:31:14,234 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 13:31:16] 2025-12-13 12:31:14,234 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 13:31:16] 2025-12-13 12:31:14,234 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 13:31:16] 2025-12-13 12:31:14,234 | INFO     | [monitor] control thread has ended
[2025-12-13 13:31:16] 2025-12-13 12:31:16,748 | INFO     | all workflow threads have been joined
[2025-12-13 13:31:16] 2025-12-13 12:31:16,748 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 13:31:16] 2025-12-13 12:31:16,748 | INFO     | traces error code: 0
[2025-12-13 13:31:16] 2025-12-13 12:31:16,748 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 13:31:16] 2025-12-13 12:31:16,828 [wrapper] ==== pilot stdout END ====
[2025-12-13 13:31:16] 2025-12-13 12:31:16,832 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 13:31:16] 2025-12-13 12:31:16,836 [wrapper] pilotpid: 446372
[2025-12-13 13:31:16] 2025-12-13 12:31:16,840 [wrapper] Pilot exit status: 0
[2025-12-13 13:31:16] 2025-12-13 12:31:16,852 [wrapper] pandaids: 6929041533
[2025-12-13 13:31:16] 2025-12-13 12:31:16,874 [wrapper] cleanup supervisor_pilot  462558 446373
[2025-12-13 13:31:16] 2025-12-13 12:31:16,878 [wrapper] Test setup, not cleaning
[2025-12-13 13:31:16] 2025-12-13 12:31:16,882 [wrapper] apfmon messages muted
[2025-12-13 13:31:16] 2025-12-13 12:31:16,886 [wrapper] ==== wrapper stdout END ====
[2025-12-13 13:31:16] 2025-12-13 12:31:16,889 [wrapper] ==== wrapper stderr END ====
[2025-12-13 13:31:16]  *** Error codes and diagnostics ***
[2025-12-13 13:31:16]     "exeErrorCode": 0,
[2025-12-13 13:31:16]     "exeErrorDiag": "",
[2025-12-13 13:31:16]     "pilotErrorCode": 0,
[2025-12-13 13:31:16]     "pilotErrorDiag": "",
[2025-12-13 13:31:16]  *** Listing of results directory ***
[2025-12-13 13:31:16] total 334004
[2025-12-13 13:31:16] -rw-r--r-- 1 boinc boinc    579449 Dec 13 07:26 pilot3.tar.gz
[2025-12-13 13:31:16] -rwx------ 1 boinc boinc     36322 Dec 13 07:51 runpilot2-wrapper.sh
[2025-12-13 13:31:16] -rw-r--r-- 1 boinc boinc      5112 Dec 13 07:51 queuedata.json
[2025-12-13 13:31:16] -rw-r--r-- 1 boinc boinc       100 Dec 13 12:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 13:31:16] -rwxr-xr-x 1 boinc boinc      7986 Dec 13 12:17 run_atlas
[2025-12-13 13:31:16] -rw-r--r-- 1 boinc boinc       105 Dec 13 12:17 job.xml
[2025-12-13 13:31:16] -rw-r--r-- 2 boinc boinc 193502969 Dec 13 12:17 EVNT.47886829._000145.pool.root.1
[2025-12-13 13:31:16] -rw-r--r-- 2 boinc boinc    592417 Dec 13 12:17 input.tar.gz
[2025-12-13 13:31:16] -rw-r--r-- 2 boinc boinc     15847 Dec 13 12:17 start_atlas.sh
[2025-12-13 13:31:16] drwxrwx--x 2 boinc boinc      4096 Dec 13 12:17 shared
[2025-12-13 13:31:16] -rw-r--r-- 1 boinc boinc         0 Dec 13 12:17 boinc_setup_complete
[2025-12-13 13:31:16] -rw-r--r-- 1 boinc boinc      6367 Dec 13 12:17 init_data.xml
[2025-12-13 13:31:16] -rw-r--r-- 1 boinc boinc         0 Dec 13 12:17 boinc_lockfile
[2025-12-13 13:31:16] -rw-r--r-- 1 boinc boinc      2537 Dec 13 12:17 pandaJob.out
[2025-12-13 13:31:16] -rw------- 1 boinc boinc    991728 Dec 13 12:18 agis_schedconf.cvmfs.json
[2025-12-13 13:31:16] -rw------- 1 boinc boinc   1516240 Dec 13 12:18 agis_ddmendpoints.agis.ALL.json
[2025-12-13 13:31:16] drwx------ 5 boinc boinc      4096 Dec 13 12:18 pilot3
[2025-12-13 13:31:16] -rw------- 1 boinc boinc 142768722 Dec 13 13:30 HITS.47886831._003579.pool.root.1
[2025-12-13 13:31:16] -rw-r--r-- 1 boinc boinc       529 Dec 13 13:30 boinc_task_state.xml
[2025-12-13 13:31:16] -rw------- 1 boinc boinc        95 Dec 13 13:30 pilot_heartbeat.json
[2025-12-13 13:31:16] -rw------- 1 boinc boinc      1018 Dec 13 13:30 memory_monitor_summary.json
[2025-12-13 13:31:16] -rw------- 1 boinc boinc    276150 Dec 13 13:30 log.47886831._003579.job.log.tgz.1
[2025-12-13 13:31:16] -rw------- 1 boinc boinc      7756 Dec 13 13:30 heartbeat.json
[2025-12-13 13:31:16] -rw-r--r-- 1 boinc boinc        27 Dec 13 13:30 wrapper_checkpoint.txt
[2025-12-13 13:31:16] -rw-r--r-- 1 boinc boinc      8192 Dec 13 13:30 boinc_mmap_file
[2025-12-13 13:31:16] -rw------- 1 boinc boinc      4751 Dec 13 13:31 pilotlog.txt
[2025-12-13 13:31:16] -rw------- 1 boinc boinc    645899 Dec 13 13:31 log.47886831._003579.job.log.1
[2025-12-13 13:31:16] -rw------- 1 boinc boinc       357 Dec 13 13:31 output.list
[2025-12-13 13:31:16] -rw-r--r-- 1 boinc boinc       620 Dec 13 13:31 runtime_log
[2025-12-13 13:31:16] -rw------- 1 boinc boinc    942080 Dec 13 13:31 result.tar.gz
[2025-12-13 13:31:16] -rw-r--r-- 1 boinc boinc      8902 Dec 13 13:31 runtime_log.err
[2025-12-13 13:31:16] -rw------- 1 boinc boinc       659 Dec 13 13:31 o0vNDmGeYo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJ5NKDmk6WLem.diag
[2025-12-13 13:31:16] -rw-r--r-- 1 boinc boinc     12235 Dec 13 13:31 stderr.txt
[2025-12-13 13:31:16] HITS file was successfully produced:
[2025-12-13 13:31:16] -rw------- 1 boinc boinc 142768722 Dec 13 13:30 shared/HITS.pool.root.1
[2025-12-13 13:31:16]  *** Contents of shared directory: ***
[2025-12-13 13:31:16] total 329916
[2025-12-13 13:31:16] -rw-r--r-- 2 boinc boinc 193502969 Dec 13 12:17 ATLAS.root_0
[2025-12-13 13:31:16] -rw-r--r-- 2 boinc boinc    592417 Dec 13 12:17 input.tar.gz
[2025-12-13 13:31:16] -rw-r--r-- 2 boinc boinc     15847 Dec 13 12:17 start_atlas.sh
[2025-12-13 13:31:16] -rw------- 1 boinc boinc 142768722 Dec 13 13:30 HITS.pool.root.1
[2025-12-13 13:31:16] -rw------- 1 boinc boinc    942080 Dec 13 13:31 result.tar.gz
13:31:18 (442577): run_atlas exited; CPU time 16439.336161
13:31:18 (442577): called boinc_finish(0)

</stderr_txt>
]]>

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