Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:40:27 (26705): wrapper (7.7.26015): starting
02:40:27 (26705): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 02:40:27] Arguments: --nthreads 12
[2025-12-13 02:40:27] Threads: 12
[2025-12-13 02:40:27] Checking for CVMFS
[2025-12-13 02:40:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 02:40:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 02:40:28] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 02:40:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 02:40:28] 2.11.2.0 2998 127587 97068 153953 2 59 12534858 20275200 1 130560 0 52341876 99.954 5676753 35269 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 02:40:28] CVMFS is ok
[2025-12-13 02:40:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 02:40:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 02:40:28] Further information can be found at the LHC@home message board.
[2025-12-13 02:40:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 02:40:28] Checking for apptainer binary...
[2025-12-13 02:40:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 02:40:28] Running /usr/bin/apptainer --version
[2025-12-13 02:40:28] apptainer version 1.3.2-1.el7
[2025-12-13 02:40:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 02:40:29] c-205-12.aglt2.org
[2025-12-13 02:40:29] apptainer works
[2025-12-13 02:40:29] Set ATHENA_PROC_NUMBER=12
[2025-12-13 02:40:29] Set ATHENA_CORE_NUMBER=12
[2025-12-13 02:40:29] Starting ATLAS job with PandaID=6929040527
[2025-12-13 02:40:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 04:00:22]  *** The last 200 lines of the pilot log: ***
[2025-12-13 04:00:22]  workdir=None
[2025-12-13 04:00:22] ]
[2025-12-13 04:00:22] 2025-12-13 08:59:39,763 | INFO     | transferring file log.47886831._003178.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929040527/log.47886831._003178.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-13 04:00:22] 2025-12-13 08:59:39,763 | INFO     | monitor loop #353: job 0:6929040527 is in state 'stageout'
[2025-12-13 04:00:22] 2025-12-13 08:59:39,763 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929040527/log.47886831._003178.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886831._003178.job
[2025-12-13 04:00:22] 2025-12-13 08:59:39,764 | WARNING  | aborting job monitor tasks since payload process 4524 is not running
[2025-12-13 04:00:22] 2025-12-13 08:59:39,785 | INFO     | adding to output.list: log.47886831._003178.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/42/85/log.47886831._003178.job.log.tg
[2025-12-13 04:00:22] 2025-12-13 08:59:39,786 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-13 04:00:22] 2025-12-13 08:59:39,786 | INFO     | summary of transferred files:
[2025-12-13 04:00:22] 2025-12-13 08:59:39,786 | INFO     |  -- lfn=log.47886831._003178.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 04:00:22] 2025-12-13 08:59:39,787 | INFO     | stage-out finished correctly
[2025-12-13 04:00:22] 2025-12-13 08:59:41,236 | INFO     | time since job start (4736s) is within the limit (174528.0s)
[2025-12-13 04:00:22] 2025-12-13 08:59:42,267 | INFO     | monitor loop #354: job 0:6929040527 is in state 'finished'
[2025-12-13 04:00:22] 2025-12-13 08:59:42,267 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 04:00:22] 2025-12-13 08:59:42,998 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 04:00:22] 2025-12-13 08:59:43,242 | INFO     | time since job start (4738s) is within the limit (174528.0s)
[2025-12-13 04:00:22] 2025-12-13 08:59:44,488 | INFO     | job 6929040527 has state=finished
[2025-12-13 04:00:22] 2025-12-13 08:59:44,488 | INFO     | preparing for final server update for job 6929040527 in state='finished'
[2025-12-13 04:00:22] 2025-12-13 08:59:44,551 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-12-13 04:00:22] 2025-12-13 08:59:44,551 | INFO     | this job has now completed (state=finished)
[2025-12-13 04:00:22] 2025-12-13 08:59:44,551 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 04:00:22] 2025-12-13 08:59:44,551 | INFO     | log transfer has been attempted: DONE
[2025-12-13 04:00:22] 2025-12-13 08:59:44,551 | INFO     | job 6929040527 has finished - writing final server update
[2025-12-13 04:00:22] 2025-12-13 08:59:44,552 | INFO     | total number of processed events: 400 (read)
[2025-12-13 04:00:22] 2025-12-13 08:59:44,554 | INFO     | executing command: lscpu
[2025-12-13 04:00:22] 2025-12-13 08:59:44,583 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 04:00:22] 2025-12-13 08:59:44,771 | INFO     | monitor loop #355: job 0:6929040527 is in state 'finished'
[2025-12-13 04:00:22] 2025-12-13 08:59:44,771 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 04:00:22] 2025-12-13 08:59:45,247 | INFO     | time since job start (4740s) is within the limit (174528.0s)
[2025-12-13 04:00:22] 2025-12-13 08:59:47,253 | INFO     | time since job start (4742s) is within the limit (174528.0s)
[2025-12-13 04:00:22] 2025-12-13 08:59:47,274 | INFO     | monitor loop #356: job 0:6929040527 is in state 'finished'
[2025-12-13 04:00:22] 2025-12-13 08:59:47,274 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 04:00:22] 2025-12-13 08:59:49,259 | INFO     | time since job start (4744s) is within the limit (174528.0s)
[2025-12-13 04:00:22] 2025-12-13 08:59:49,777 | INFO     | monitor loop #357: job 0:6929040527 is in state 'finished'
[2025-12-13 04:00:22] 2025-12-13 08:59:49,777 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 04:00:22] 2025-12-13 08:59:50,396 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 04:00:22] 2025-12-13 08:59:50,400 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-12-13 04:00:22] 2025-12-13 08:59:50,402 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929040527/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 04:00:22] 2025-12-13 08:59:50,403 | INFO     | extracted standard info from prmon json
[2025-12-13 04:00:22] 2025-12-13 08:59:50,403 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 04:00:22] 2025-12-13 08:59:50,403 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 04:00:22] 2025-12-13 08:59:50,403 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 04:00:22] 2025-12-13 08:59:50,403 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 04:00:22] 2025-12-13 08:59:50,405 | INFO     | fitting pss+swap vs Time
[2025-12-13 04:00:22] 2025-12-13 08:59:50,405 | INFO     | sum of square deviations: 110960220.0
[2025-12-13 04:00:22] 2025-12-13 08:59:50,405 | INFO     | sum of deviations: -10209036371.999998
[2025-12-13 04:00:22] 2025-12-13 08:59:50,406 | INFO     | mean x: 1765614114.0
[2025-12-13 04:00:22] 2025-12-13 08:59:50,406 | INFO     | mean y: 2806507.61971831
[2025-12-13 04:00:22] 2025-12-13 08:59:50,406 | INFO     | intersect: 162450381942.69504
[2025-12-13 04:00:22] 2025-12-13 08:59:50,406 | INFO     | chi2: 0.053006652320616014
[2025-12-13 04:00:22] 2025-12-13 08:59:50,406 | INFO     | current memory leak: -92.01 B/s (using 71 data points, chi2=0.05)
[2025-12-13 04:00:22] 2025-12-13 08:59:50,406 | INFO     | could have reported an average CPU frequency of 2028 MHz (6 samples)
[2025-12-13 04:00:22] 2025-12-13 08:59:50,407 | INFO     | ..............................
[2025-12-13 04:00:22] 2025-12-13 08:59:50,407 | INFO     | . Timing measurements:
[2025-12-13 04:00:22] 2025-12-13 08:59:50,407 | INFO     | . get job = 0 s
[2025-12-13 04:00:22] 2025-12-13 08:59:50,407 | INFO     | . initial setup = 2 s
[2025-12-13 04:00:22] 2025-12-13 08:59:50,407 | INFO     | . payload setup = 7 s
[2025-12-13 04:00:22] 2025-12-13 08:59:50,407 | INFO     | . stage-in = 0 s
[2025-12-13 04:00:22] 2025-12-13 08:59:50,407 | INFO     | . payload execution = 4705 s
[2025-12-13 04:00:22] 2025-12-13 08:59:50,407 | INFO     | . stage-out = 0 s
[2025-12-13 04:00:22] 2025-12-13 08:59:50,407 | INFO     | . log creation = 0 s
[2025-12-13 04:00:22] 2025-12-13 08:59:50,407 | INFO     | ..............................
[2025-12-13 04:00:22] 2025-12-13 08:59:50,488 | INFO     | 
[2025-12-13 04:00:22] 2025-12-13 08:59:50,488 | INFO     | job summary report
[2025-12-13 04:00:22] 2025-12-13 08:59:50,488 | INFO     | --------------------------------------------------
[2025-12-13 04:00:22] 2025-12-13 08:59:50,488 | INFO     | PanDA job id: 6929040527
[2025-12-13 04:00:22] 2025-12-13 08:59:50,489 | INFO     | task id: 47886831
[2025-12-13 04:00:22] 2025-12-13 08:59:50,489 | INFO     | errors: (none)
[2025-12-13 04:00:22] 2025-12-13 08:59:50,489 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 04:00:22] 2025-12-13 08:59:50,489 | INFO     | pilot state: finished 
[2025-12-13 04:00:22] 2025-12-13 08:59:50,489 | INFO     | transexitcode: 0
[2025-12-13 04:00:22] 2025-12-13 08:59:50,490 | INFO     | exeerrorcode: 0
[2025-12-13 04:00:22] 2025-12-13 08:59:50,490 | INFO     | exeerrordiag: 
[2025-12-13 04:00:22] 2025-12-13 08:59:50,490 | INFO     | exitcode: 0
[2025-12-13 04:00:22] 2025-12-13 08:59:50,490 | INFO     | exitmsg: OK
[2025-12-13 04:00:22] 2025-12-13 08:59:50,490 | INFO     | cpuconsumptiontime: 51204 s
[2025-12-13 04:00:22] 2025-12-13 08:59:50,490 | INFO     | nevents: 400
[2025-12-13 04:00:22] 2025-12-13 08:59:50,490 | INFO     | neventsw: 0
[2025-12-13 04:00:22] 2025-12-13 08:59:50,490 | INFO     | pid: 4524
[2025-12-13 04:00:22] 2025-12-13 08:59:50,490 | INFO     | pgrp: 4524
[2025-12-13 04:00:22] 2025-12-13 08:59:50,490 | INFO     | corecount: 12
[2025-12-13 04:00:22] 2025-12-13 08:59:50,491 | INFO     | event service: False
[2025-12-13 04:00:22] 2025-12-13 08:59:50,491 | INFO     | sizes: {0: 2283161, 1: 2284017, 6: 2284279, 12: 2284307, 4716: 2310485, 4718: 2319483, 4721: 2319667, 4729: 2319861}
[2025-12-13 04:00:22] 2025-12-13 08:59:50,491 | INFO     | --------------------------------------------------
[2025-12-13 04:00:22] 2025-12-13 08:59:50,491 | INFO     | 
[2025-12-13 04:00:22] 2025-12-13 08:59:50,491 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 04:00:22] 2025-12-13 08:59:50,512 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 04:00:22] 2025-12-13 08:59:50,512 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 04:00:22] 2025-12-13 08:59:50,512 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 04:00:22] 2025-12-13 08:59:50,512 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 04:00:22] 2025-12-13 08:59:50,513 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 04:00:22] 2025-12-13 08:59:50,513 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 04:00:22] 2025-12-13 08:59:50,513 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 04:00:22] 2025-12-13 08:59:50,513 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 04:00:22] 2025-12-13 08:59:50,513 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 04:00:22] 2025-12-13 08:59:50,513 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 04:00:22] 2025-12-13 08:59:50,514 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 04:00:22] 2025-12-13 08:59:50,514 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 04:00:22] 2025-12-13 08:59:50,514 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 04:00:22] 2025-12-13 08:59:50,514 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 04:00:22] 2025-12-13 08:59:50,514 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 04:00:22] 2025-12-13 08:59:50,514 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 04:00:22] 2025-12-13 08:59:50,515 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 04:00:22] 2025-12-13 08:59:50,515 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 04:00:22] 2025-12-13 08:59:50,515 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 04:00:22] 2025-12-13 08:59:50,515 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 04:00:22] 2025-12-13 08:59:50,515 | INFO     | job 6929040527 has completed (purged errors)
[2025-12-13 04:00:22] 2025-12-13 08:59:50,516 | INFO     | overall cleanup function is called
[2025-12-13 04:00:22] 2025-12-13 08:59:51,524 | INFO     | --- collectZombieJob: --- 10, [4524]
[2025-12-13 04:00:22] 2025-12-13 08:59:51,524 | INFO     | zombie collector waiting for pid 4524
[2025-12-13 04:00:22] 2025-12-13 08:59:51,524 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 04:00:22] 2025-12-13 08:59:51,524 | INFO     | collected zombie processes
[2025-12-13 04:00:22] 2025-12-13 08:59:51,524 | INFO     | will attempt to kill all subprocesses of pid=4524
[2025-12-13 04:00:22] 2025-12-13 08:59:51,617 | INFO     | process IDs to be killed: [4524] (in reverse order)
[2025-12-13 04:00:22] 2025-12-13 08:59:51,667 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 04:00:22] 2025-12-13 08:59:51,667 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 04:00:22] 2025-12-13 08:59:51,671 | INFO     | did not find any defunct processes belonging to 4524
[2025-12-13 04:00:22] 2025-12-13 08:59:51,674 | INFO     | did not find any defunct processes belonging to 4524
[2025-12-13 04:00:22] 2025-12-13 08:59:51,674 | INFO     | ready for new job
[2025-12-13 04:00:22] 2025-12-13 08:59:51,674 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 04:00:22] 2025-12-13 08:59:51,676 | INFO     | ***************************************
[2025-12-13 04:00:22] 2025-12-13 08:59:51,676 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 04:00:22] 2025-12-13 08:59:51,676 | INFO     | ***************************************
[2025-12-13 04:00:22] 2025-12-13 08:59:51,676 | INFO     | 
[2025-12-13 04:00:22] 2025-12-13 08:59:51,677 | INFO     | architecture information:
[2025-12-13 04:00:22] 2025-12-13 08:59:51,677 | INFO     | executing command: cat /etc/os-release
[2025-12-13 04:00:22] 2025-12-13 08:59:51,692 | INFO     | cat /etc/os-release:
[2025-12-13 04:00:22] NAME="CentOS Linux"
[2025-12-13 04:00:22] VERSION="7 (Core)"
[2025-12-13 04:00:22] ID="centos"
[2025-12-13 04:00:22] ID_LIKE="rhel fedora"
[2025-12-13 04:00:22] VERSION_ID="7"
[2025-12-13 04:00:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 04:00:22] ANSI_COLOR="0;31"
[2025-12-13 04:00:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 04:00:22] HOME_URL="https://www.centos.org/"
[2025-12-13 04:00:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 04:00:22] 
[2025-12-13 04:00:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 04:00:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 04:00:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 04:00:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 04:00:22] 
[2025-12-13 04:00:22] 2025-12-13 08:59:51,692 | INFO     | ***************************************
[2025-12-13 04:00:22] 2025-12-13 08:59:52,194 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 04:00:22] 2025-12-13 08:59:52,210 | INFO     | sufficient remaining disk space (29452402688 B)
[2025-12-13 04:00:22] 2025-12-13 08:59:52,210 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 04:00:22] 2025-12-13 08:59:52,211 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 04:00:22] 2025-12-13 08:59:52,211 | INFO     | update_server=False
[2025-12-13 04:00:22] 2025-12-13 08:59:52,211 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 04:00:22] 2025-12-13 08:59:52,211 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 04:00:22] 2025-12-13 08:59:52,229 | INFO     | [monitor] cgroup control has ended
[2025-12-13 04:00:22] 2025-12-13 08:59:52,280 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-13 04:00:22] 2025-12-13 08:59:52,280 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-13 04:00:22] 2025-12-13 08:59:52,280 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 04:00:22] 2025-12-13 08:59:52,281 | INFO     | will abort loop
[2025-12-13 04:00:22] 2025-12-13 08:59:52,353 | INFO     | all payload control threads have been joined
[2025-12-13 04:00:22] 2025-12-13 08:59:52,708 | INFO     | all job control threads have been joined
[2025-12-13 04:00:22] 2025-12-13 08:59:52,885 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 04:00:22] 2025-12-13 08:59:53,016 | INFO     | all data control threads have been joined
[2025-12-13 04:00:22] 2025-12-13 08:59:53,212 | INFO     | [job] retrieve thread has finished
[2025-12-13 04:00:22] 2025-12-13 08:59:53,217 | INFO     | [job] queue monitor thread has finished
[2025-12-13 04:00:22] 2025-12-13 08:59:53,247 | INFO     | [payload] validate_post thread has finished
[2025-12-13 04:00:22] 2025-12-13 08:59:53,286 | INFO     | [job] job monitor thread has finished
[2025-12-13 04:00:22] 2025-12-13 08:59:53,359 | INFO     | [payload] control thread has finished
[2025-12-13 04:00:22] 2025-12-13 08:59:53,513 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 04:00:22] 2025-12-13 08:59:53,583 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 04:00:22] 2025-12-13 08:59:53,636 | INFO     | [job] validate thread has finished
[2025-12-13 04:00:22] 2025-12-13 08:59:53,713 | INFO     | [job] control thread has finished
[2025-12-13 04:00:22] 2025-12-13 08:59:53,808 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 04:00:22] 2025-12-13 08:59:54,021 | INFO     | [data] control thread has finished
[2025-12-13 04:00:22] 2025-12-13 08:59:54,142 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 04:00:22] 2025-12-13 08:59:54,321 | INFO     | [payload] failed_post thread has finished
[2025-12-13 04:00:22] 2025-12-13 08:59:54,590 | INFO     | [data] copytool_in thread has finished
[2025-12-13 04:00:22] 2025-12-13 08:59:54,891 | INFO     | [data] copytool_out thread has finished
[2025-12-13 04:00:22] 2025-12-13 08:59:57,589 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 04:00:22] 2025-12-13 09:00:02,908 | INFO     | job.realtimelogging is not enabled
[2025-12-13 04:00:22] 2025-12-13 09:00:03,913 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 04:00:22] 2025-12-13 09:00:04,475 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140241962481472)>', '<ExcThread(monitor, started 140241511884544)>']
[2025-12-13 04:00:22] 2025-12-13 09:00:09,500 | INFO     | all workflow threads have been joined
[2025-12-13 04:00:22] 2025-12-13 09:00:09,503 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 04:00:22] 2025-12-13 09:00:09,503 | INFO     | traces error code: 0
[2025-12-13 04:00:22] 2025-12-13 09:00:09,504 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 04:00:22] 2025-12-13 09:00:21,337 | INFO     | 4748s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-13 04:00:22] 2025-12-13 09:00:22,460 | INFO     | PID=30393 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 04:00:22] 2025-12-13 09:00:22,461 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 04:00:22] 2025-12-13 09:00:22,461 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 04:00:22] 2025-12-13 09:00:22,461 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 04:00:22] 2025-12-13 09:00:22,461 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 04:00:22] 2025-12-13 09:00:22,461 | INFO     | [monitor] control thread has ended
[2025-12-13 04:00:22] 2025-12-13 09:00:22,551 [wrapper] ==== pilot stdout END ====
[2025-12-13 04:00:22] 2025-12-13 09:00:22,555 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 04:00:22] 2025-12-13 09:00:22,559 [wrapper] pilotpid: 30393
[2025-12-13 04:00:22] 2025-12-13 09:00:22,563 [wrapper] Pilot exit status: 0
[2025-12-13 04:00:22] 2025-12-13 09:00:22,579 [wrapper] pandaids: 6929040527
[2025-12-13 04:00:22] 2025-12-13 09:00:22,619 [wrapper] cleanup supervisor_pilot   584 30394
[2025-12-13 04:00:22] 2025-12-13 09:00:22,623 [wrapper] Test setup, not cleaning
[2025-12-13 04:00:22] 2025-12-13 09:00:22,627 [wrapper] apfmon messages muted
[2025-12-13 04:00:22] 2025-12-13 09:00:22,631 [wrapper] ==== wrapper stdout END ====
[2025-12-13 04:00:22] 2025-12-13 09:00:22,635 [wrapper] ==== wrapper stderr END ====
[2025-12-13 04:00:22]  *** Error codes and diagnostics ***
[2025-12-13 04:00:22]     "exeErrorCode": 0,
[2025-12-13 04:00:22]     "exeErrorDiag": "",
[2025-12-13 04:00:22]     "pilotErrorCode": 0,
[2025-12-13 04:00:22]     "pilotErrorDiag": "",
[2025-12-13 04:00:22]  *** Listing of results directory ***
[2025-12-13 04:00:22] total 341796
[2025-12-13 04:00:22] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 01:26 pilot3.tar.gz
[2025-12-13 04:00:22] -rwx------ 1 boincer umatlas     36322 Dec 13 01:50 runpilot2-wrapper.sh
[2025-12-13 04:00:22] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 01:51 queuedata.json
[2025-12-13 04:00:22] -rw-r--r-- 1 boincer umatlas       100 Dec 13 02:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 04:00:22] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 02:40 run_atlas
[2025-12-13 04:00:22] -rw-r--r-- 1 boincer umatlas       105 Dec 13 02:40 job.xml
[2025-12-13 04:00:22] -rw-r--r-- 2 boincer umatlas 190115134 Dec 13 02:40 EVNT.47886829._000129.pool.root.1
[2025-12-13 04:00:22] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 02:40 start_atlas.sh
[2025-12-13 04:00:22] drwxrwx--x 2 boincer umatlas      4096 Dec 13 02:40 shared
[2025-12-13 04:00:22] -rw-r--r-- 2 boincer umatlas    592414 Dec 13 02:40 input.tar.gz
[2025-12-13 04:00:22] -rw-r--r-- 1 boincer umatlas         0 Dec 13 02:40 boinc_lockfile
[2025-12-13 04:00:22] -rw-r--r-- 1 boincer umatlas      2537 Dec 13 02:40 pandaJob.out
[2025-12-13 04:00:22] -rw------- 1 boincer umatlas        57 Dec 13 02:40 setup.sh.local
[2025-12-13 04:00:22] -rw------- 1 boincer umatlas    991736 Dec 13 02:40 agis_schedconf.cvmfs.json
[2025-12-13 04:00:22] -rw------- 1 boincer umatlas   1516240 Dec 13 02:40 agis_ddmendpoints.agis.ALL.json
[2025-12-13 04:00:22] drwx------ 5 boincer umatlas      4096 Dec 13 02:40 pilot3
[2025-12-13 04:00:22] -rw-r--r-- 1 boincer umatlas      5953 Dec 13 03:57 init_data.xml
[2025-12-13 04:00:22] -rw------- 1 boincer umatlas 153796206 Dec 13 03:59 HITS.47886831._003178.pool.root.1
[2025-12-13 04:00:22] -rw-r--r-- 1 boincer umatlas       529 Dec 13 03:59 boinc_task_state.xml
[2025-12-13 04:00:22] -rw------- 1 boincer umatlas      1045 Dec 13 03:59 memory_monitor_summary.json
[2025-12-13 04:00:22] -rw------- 1 boincer umatlas    398365 Dec 13 03:59 log.47886831._003178.job.log.tgz.1
[2025-12-13 04:00:22] -rw------- 1 boincer umatlas        95 Dec 13 03:59 pilot_heartbeat.json
[2025-12-13 04:00:22] -rw------- 1 boincer umatlas      7848 Dec 13 03:59 heartbeat.json
[2025-12-13 04:00:22] -rw-r--r-- 1 boincer umatlas        27 Dec 13 04:00 wrapper_checkpoint.txt
[2025-12-13 04:00:22] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 04:00 boinc_mmap_file
[2025-12-13 04:00:22] -rw------- 1 boincer umatlas       860 Dec 13 04:00 pilotlog.txt
[2025-12-13 04:00:22] -rw------- 1 boincer umatlas    685456 Dec 13 04:00 log.47886831._003178.job.log.1
[2025-12-13 04:00:22] -rw------- 1 boincer umatlas       357 Dec 13 04:00 output.list
[2025-12-13 04:00:22] -rw-r--r-- 1 boincer umatlas       620 Dec 13 04:00 runtime_log
[2025-12-13 04:00:22] -rw------- 1 boincer umatlas   1105920 Dec 13 04:00 result.tar.gz
[2025-12-13 04:00:22] -rw-r--r-- 1 boincer umatlas      9344 Dec 13 04:00 runtime_log.err
[2025-12-13 04:00:22] -rw------- 1 boincer umatlas       659 Dec 13 04:00 D2bKDmydYo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm41NKDmuq31im.diag
[2025-12-13 04:00:22] -rw-r--r-- 1 boincer umatlas     22317 Dec 13 04:00 stderr.txt
[2025-12-13 04:00:22] HITS file was successfully produced:
[2025-12-13 04:00:22] -rw------- 1 boincer umatlas 153796206 Dec 13 03:59 shared/HITS.pool.root.1
[2025-12-13 04:00:22]  *** Contents of shared directory: ***
[2025-12-13 04:00:22] total 337536
[2025-12-13 04:00:22] -rw-r--r-- 2 boincer umatlas 190115134 Dec 13 02:40 ATLAS.root_0
[2025-12-13 04:00:22] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 02:40 start_atlas.sh
[2025-12-13 04:00:22] -rw-r--r-- 2 boincer umatlas    592414 Dec 13 02:40 input.tar.gz
[2025-12-13 04:00:22] -rw------- 1 boincer umatlas 153796206 Dec 13 03:59 HITS.pool.root.1
[2025-12-13 04:00:22] -rw------- 1 boincer umatlas   1105920 Dec 13 04:00 result.tar.gz
04:00:24 (26705): run_atlas exited; CPU time 51179.295379
04:00:24 (26705): called boinc_finish(0)

</stderr_txt>
]]>

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