Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:52:50 (101380): wrapper (7.7.26015): starting
08:52:50 (101380): wrapper: running run_atlas (--nthreads 4)
[2025-12-13 08:52:50] Arguments: --nthreads 4
[2025-12-13 08:52:50] Threads: 4
[2025-12-13 08:52:50] Checking for CVMFS
[2025-12-13 08:52:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 08:52:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 08:52:53] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 08:52:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 08:52:54] 2.9.2.0 101575 0 29168 153953 3 1 29638764 36864000 0 130560 0 0 0.000 1335 53400 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-13 08:52:54] CVMFS is ok
[2025-12-13 08:52:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 08:52:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 08:52:54] Further information can be found at the LHC@home message board.
[2025-12-13 08:52:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 08:52:54] Checking for apptainer binary...
[2025-12-13 08:52:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 08:52:54] Running /usr/bin/apptainer --version
[2025-12-13 08:52:54] apptainer version 1.4.1-1.1
[2025-12-13 08:52:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 08:52:54] thA373a
[2025-12-13 08:52:54] apptainer works
[2025-12-13 08:52:54] Set ATHENA_PROC_NUMBER=4
[2025-12-13 08:52:54] Set ATHENA_CORE_NUMBER=4
[2025-12-13 08:52:54] Starting ATLAS job with PandaID=6929040469
[2025-12-13 08:52:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 09:00:10]  *** The last 200 lines of the pilot log: ***
[2025-12-13 09:00:10] 2025-12-13 07:59:19,196 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 09:00:10] 2025-12-13 07:59:19,293 | INFO     | all job control threads have been joined
[2025-12-13 09:00:10] 2025-12-13 07:59:19,427 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-13 09:00:10] 2025-12-13 07:59:19,427 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-13 09:00:10] 2025-12-13 07:59:19,427 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 09:00:10] 2025-12-13 07:59:19,427 | INFO     | will abort loop
[2025-12-13 09:00:10] 2025-12-13 07:59:20,199 | INFO     | all payload control threads have been joined
[2025-12-13 09:00:10] 2025-12-13 07:59:20,201 | INFO     | [job] retrieve thread has finished
[2025-12-13 09:00:10] 2025-12-13 07:59:20,201 | INFO     | [job] queue monitor thread has finished
[2025-12-13 09:00:10] 2025-12-13 07:59:20,274 | INFO     | all data control threads have been joined
[2025-12-13 09:00:10] 2025-12-13 07:59:20,299 | INFO     | [job] control thread has finished
[2025-12-13 09:00:10] 2025-12-13 07:59:20,433 | INFO     | [job] job monitor thread has finished
[2025-12-13 09:00:10] 2025-12-13 07:59:20,612 | INFO     | [job] validate thread has finished
[2025-12-13 09:00:10] 2025-12-13 07:59:20,679 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 09:00:10] 2025-12-13 07:59:20,716 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 09:00:10] 2025-12-13 07:59:20,801 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 09:00:10] 2025-12-13 07:59:20,965 | INFO     | [payload] failed_post thread has finished
[2025-12-13 09:00:10] 2025-12-13 07:59:21,018 | INFO     | [data] copytool_in thread has finished
[2025-12-13 09:00:10] 2025-12-13 07:59:21,080 | INFO     | [payload] validate_post thread has finished
[2025-12-13 09:00:10] 2025-12-13 07:59:21,090 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 09:00:10] 2025-12-13 07:59:21,201 | INFO     | [data] copytool_out thread has finished
[2025-12-13 09:00:10] 2025-12-13 07:59:21,202 | INFO     | [payload] control thread has finished
[2025-12-13 09:00:10] 2025-12-13 07:59:21,237 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 09:00:10] 2025-12-13 07:59:21,279 | INFO     | [data] control thread has finished
[2025-12-13 09:00:10] 2025-12-13 07:59:25,094 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 09:00:10] 2025-12-13 07:59:49,401 | INFO     | PID=105731 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-13 09:00:10] 2025-12-13 07:59:49,401 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 09:00:10] 2025-12-13 07:59:49,401 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 09:00:10] 2025-12-13 07:59:49,401 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 09:00:10] 2025-12-13 08:00:03,784 | INFO     | [monitor] cgroup control has ended
[2025-12-13 09:00:10] 2025-12-13 08:00:05,654 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140372383029056)>', '<ExcThread(monitor, started 140371543717632)>']
[2025-12-13 09:00:10] 2025-12-13 08:00:06,490 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 09:00:10] 2025-12-13 08:00:06,491 | INFO     | [monitor] control thread has ended
[2025-12-13 09:00:10] 2025-12-13 08:00:10,679 | INFO     | all workflow threads have been joined
[2025-12-13 09:00:10] 2025-12-13 08:00:10,680 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 09:00:10] 2025-12-13 08:00:10,680 | INFO     | traces error code: 0
[2025-12-13 09:00:10] 2025-12-13 08:00:10,680 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 09:00:10] 2025-12-13 08:00:10,755 [wrapper] ==== pilot stdout END ====
[2025-12-13 09:00:10] 2025-12-13 08:00:10,759 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 09:00:10] 2025-12-13 08:00:10,763 [wrapper] pilotpid: 105731
[2025-12-13 09:00:10] 2025-12-13 08:00:10,767 [wrapper] Pilot exit status: 0
[2025-12-13 09:00:10] 2025-12-13 08:00:10,780 [wrapper] pandaids: 6929040469
[2025-12-13 09:00:10] 2025-12-13 08:00:10,801 [wrapper] cleanup supervisor_pilot  105737 105732
[2025-12-13 09:00:10] 2025-12-13 08:00:10,805 [wrapper] Test setup, not cleaning
[2025-12-13 09:00:10] 2025-12-13 08:00:10,809 [wrapper] apfmon messages muted
[2025-12-13 09:00:10] 2025-12-13 08:00:10,813 [wrapper] ==== wrapper stdout END ====
[2025-12-13 09:00:10] 2025-12-13 08:00:10,816 [wrapper] ==== wrapper stderr END ====
[2025-12-13 09:00:10]  *** Error codes and diagnostics ***
[2025-12-13 09:00:10]     "exeErrorCode": 65,
[2025-12-13 09:00:10]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (98); Possible memory leak: 'pss' slope: 8239.28 KB/s",
[2025-12-13 09:00:10]     "pilotErrorCode": 1305,
[2025-12-13 09:00:10]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (98); Possible memory leak: 'pss' slope: 8239.28 KB/s",
[2025-12-13 09:00:10]  *** Listing of results directory ***
[2025-12-13 09:00:10] total 193928
[2025-12-13 09:00:10] -rw-r--r-- 1 boinc boinc    579449 Dec 13 07:26 pilot3.tar.gz
[2025-12-13 09:00:10] -rwx------ 1 boinc boinc     36322 Dec 13 07:50 runpilot2-wrapper.sh
[2025-12-13 09:00:10] -rw-r--r-- 1 boinc boinc      5112 Dec 13 07:51 queuedata.json
[2025-12-13 09:00:10] -rw-r--r-- 1 boinc boinc       100 Dec 13 08:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 09:00:10] -rwxr-xr-x 1 boinc boinc      7986 Dec 13 08:52 run_atlas
[2025-12-13 09:00:10] -rw-r--r-- 1 boinc boinc       105 Dec 13 08:52 job.xml
[2025-12-13 09:00:10] -rw-r--r-- 2 boinc boinc 194208928 Dec 13 08:52 EVNT.47886829._000127.pool.root.1
[2025-12-13 09:00:10] -rw-r--r-- 2 boinc boinc    592413 Dec 13 08:52 input.tar.gz
[2025-12-13 09:00:10] -rw-r--r-- 2 boinc boinc     15847 Dec 13 08:52 start_atlas.sh
[2025-12-13 09:00:10] drwxrwx--x 2 boinc boinc      4096 Dec 13 08:52 shared
[2025-12-13 09:00:10] -rw-r--r-- 1 boinc boinc         0 Dec 13 08:52 boinc_setup_complete
[2025-12-13 09:00:10] -rw-r--r-- 1 boinc boinc      6378 Dec 13 08:52 init_data.xml
[2025-12-13 09:00:10] -rw-r--r-- 1 boinc boinc         0 Dec 13 08:52 boinc_lockfile
[2025-12-13 09:00:10] -rw-r--r-- 1 boinc boinc      2537 Dec 13 08:52 pandaJob.out
[2025-12-13 09:00:10] -rw------- 1 boinc boinc    991736 Dec 13 08:53 agis_schedconf.cvmfs.json
[2025-12-13 09:00:10] -rw------- 1 boinc boinc   1516240 Dec 13 08:53 agis_ddmendpoints.agis.ALL.json
[2025-12-13 09:00:10] drwx------ 5 boinc boinc      4096 Dec 13 08:53 pilot3
[2025-12-13 09:00:10] -rw-r--r-- 1 boinc boinc       527 Dec 13 08:57 boinc_task_state.xml
[2025-12-13 09:00:10] -rw------- 1 boinc boinc       999 Dec 13 08:57 memory_monitor_summary.json
[2025-12-13 09:00:10] -rw------- 1 boinc boinc    123096 Dec 13 08:57 log.47886831._003120.job.log.tgz.1
[2025-12-13 09:00:10] -rw------- 1 boinc boinc        95 Dec 13 08:59 pilot_heartbeat.json
[2025-12-13 09:00:10] -rw------- 1 boinc boinc      8704 Dec 13 08:59 heartbeat.json
[2025-12-13 09:00:10] -rw-r--r-- 1 boinc boinc        24 Dec 13 09:00 wrapper_checkpoint.txt
[2025-12-13 09:00:10] -rw-r--r-- 1 boinc boinc      8192 Dec 13 09:00 boinc_mmap_file
[2025-12-13 09:00:10] -rw------- 1 boinc boinc      4937 Dec 13 09:00 pilotlog.txt
[2025-12-13 09:00:10] -rw------- 1 boinc boinc    109940 Dec 13 09:00 log.47886831._003120.job.log.1
[2025-12-13 09:00:10] -rw------- 1 boinc boinc       188 Dec 13 09:00 output.list
[2025-12-13 09:00:10] -rw-r--r-- 1 boinc boinc       620 Dec 13 09:00 runtime_log
[2025-12-13 09:00:10] -rw------- 1 boinc boinc    256000 Dec 13 09:00 result.tar.gz
[2025-12-13 09:00:10] -rw-r--r-- 1 boinc boinc      8749 Dec 13 09:00 runtime_log.err
[2025-12-13 09:00:10] -rw------- 1 boinc boinc       651 Dec 13 09:00 CChKDmydYo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmb6RKDmu2TRum.diag
[2025-12-13 09:00:10] -rw-r--r-- 1 boinc boinc      7590 Dec 13 09:00 stderr.txt
[2025-12-13 09:00:10] No HITS result produced
[2025-12-13 09:00:10]  *** Contents of shared directory: ***
[2025-12-13 09:00:10] total 190512
[2025-12-13 09:00:10] -rw-r--r-- 2 boinc boinc 194208928 Dec 13 08:52 ATLAS.root_0
[2025-12-13 09:00:10] -rw-r--r-- 2 boinc boinc    592413 Dec 13 08:52 input.tar.gz
[2025-12-13 09:00:10] -rw-r--r-- 2 boinc boinc     15847 Dec 13 08:52 start_atlas.sh
[2025-12-13 09:00:10] -rw------- 1 boinc boinc    256000 Dec 13 09:00 result.tar.gz
09:00:12 (101380): run_atlas exited; CPU time 113.437999
09:00:12 (101380): called boinc_finish(0)

</stderr_txt>
]]>

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