Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:00:15 (121333): wrapper (7.7.26015): starting
09:00:15 (121333): wrapper: running run_atlas (--nthreads 4)
[2025-12-13 09:00:15] Arguments: --nthreads 4
[2025-12-13 09:00:15] Threads: 4
[2025-12-13 09:00:15] Checking for CVMFS
[2025-12-13 09:00:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 09:00:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 09:00:15] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 09:00:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 09:00:15] 2.9.2.0 101575 7 48408 153953 0 188 29651891 36864000 0 130560 0 54147 99.960 4013 41802 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-13 09:00:15] CVMFS is ok
[2025-12-13 09:00:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 09:00:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 09:00:15] Further information can be found at the LHC@home message board.
[2025-12-13 09:00:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 09:00:15] Checking for apptainer binary...
[2025-12-13 09:00:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 09:00:15] Running /usr/bin/apptainer --version
[2025-12-13 09:00:15] apptainer version 1.4.1-1.1
[2025-12-13 09:00:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 09:00:15] thA373a
[2025-12-13 09:00:15] apptainer works
[2025-12-13 09:00:15] Set ATHENA_PROC_NUMBER=4
[2025-12-13 09:00:15] Set ATHENA_CORE_NUMBER=4
[2025-12-13 09:00:15] Starting ATLAS job with PandaID=6929040468
[2025-12-13 09:00:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:19:30 (2889): wrapper (7.7.26015): starting
09:19:30 (2889): wrapper: running run_atlas (--nthreads 4)
[2025-12-13 09:19:30] Arguments: --nthreads 4
[2025-12-13 09:19:30] Threads: 4
[2025-12-13 09:19:30] This job has been restarted, cleaning up previous attempt
[2025-12-13 09:19:30] Checking for CVMFS
[2025-12-13 09:19:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 09:19:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 09:19:33] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 09:19:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 09:19:33] 2.9.2.0 3090 0 29168 153954 4 1 29654888 36864000 0 130560 0 0 0.000 1335 35131 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-13 09:19:33] CVMFS is ok
[2025-12-13 09:19:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 09:19:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 09:19:33] Further information can be found at the LHC@home message board.
[2025-12-13 09:19:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 09:19:33] Checking for apptainer binary...
[2025-12-13 09:19:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 09:19:33] Running /usr/bin/apptainer --version
[2025-12-13 09:19:33] apptainer version 1.4.1-1.1
[2025-12-13 09:19:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 09:19:33] thA373a
[2025-12-13 09:19:33] apptainer works
[2025-12-13 09:19:33] Set ATHENA_PROC_NUMBER=4
[2025-12-13 09:19:33] Set ATHENA_CORE_NUMBER=4
[2025-12-13 09:19:33] Starting ATLAS job with PandaID=6929040468
[2025-12-13 09:19:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 09:22:54]  *** The last 200 lines of the pilot log: ***
[2025-12-13 09:22:54] 2025-12-13 08:22:22,966 | INFO     | will attempt to kill all subprocesses of pid=13841
[2025-12-13 09:22:54] 2025-12-13 08:22:23,010 | INFO     | process IDs to be killed: [13841] (in reverse order)
[2025-12-13 09:22:54] 2025-12-13 08:22:23,043 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 09:22:54] 2025-12-13 08:22:23,043 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 09:22:54] 2025-12-13 08:22:23,044 | INFO     | did not find any defunct processes belonging to 13841
[2025-12-13 09:22:54] 2025-12-13 08:22:23,046 | INFO     | did not find any defunct processes belonging to 13841
[2025-12-13 09:22:54] 2025-12-13 08:22:23,046 | INFO     | ready for new job
[2025-12-13 09:22:54] 2025-12-13 08:22:23,046 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 09:22:54] 2025-12-13 08:22:23,046 | INFO     | ***************************************
[2025-12-13 09:22:54] 2025-12-13 08:22:23,046 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 09:22:54] 2025-12-13 08:22:23,047 | INFO     | ***************************************
[2025-12-13 09:22:54] 2025-12-13 08:22:23,047 | INFO     | 
[2025-12-13 09:22:54] 2025-12-13 08:22:23,047 | INFO     | architecture information:
[2025-12-13 09:22:54] 2025-12-13 08:22:23,047 | INFO     | executing command: cat /etc/os-release
[2025-12-13 09:22:54] 2025-12-13 08:22:23,061 | INFO     | cat /etc/os-release:
[2025-12-13 09:22:54] NAME="CentOS Linux"
[2025-12-13 09:22:54] VERSION="7 (Core)"
[2025-12-13 09:22:54] ID="centos"
[2025-12-13 09:22:54] ID_LIKE="rhel fedora"
[2025-12-13 09:22:54] VERSION_ID="7"
[2025-12-13 09:22:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 09:22:54] ANSI_COLOR="0;31"
[2025-12-13 09:22:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 09:22:54] HOME_URL="https://www.centos.org/"
[2025-12-13 09:22:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 09:22:54] 
[2025-12-13 09:22:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 09:22:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 09:22:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 09:22:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 09:22:54] 
[2025-12-13 09:22:54] 2025-12-13 08:22:23,061 | INFO     | ***************************************
[2025-12-13 09:22:54] 2025-12-13 08:22:23,565 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-13 09:22:54] 2025-12-13 08:22:23,582 | INFO     | sufficient remaining disk space (331947704320 B)
[2025-12-13 09:22:54] 2025-12-13 08:22:23,582 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 09:22:54] 2025-12-13 08:22:23,582 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 09:22:54] 2025-12-13 08:22:23,582 | INFO     | update_server=False
[2025-12-13 09:22:54] 2025-12-13 08:22:23,582 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 09:22:54] 2025-12-13 08:22:23,582 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 09:22:54] 2025-12-13 08:22:23,582 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 09:22:54] 2025-12-13 08:22:23,847 | INFO     | all data control threads have been joined
[2025-12-13 09:22:54] 2025-12-13 08:22:23,862 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 09:22:54] 2025-12-13 08:22:23,862 | INFO     | aborting loop
[2025-12-13 09:22:54] 2025-12-13 08:22:24,249 | INFO     | all job control threads have been joined
[2025-12-13 09:22:54] 2025-12-13 08:22:24,588 | INFO     | [job] retrieve thread has finished
[2025-12-13 09:22:54] 2025-12-13 08:22:24,588 | INFO     | [job] queue monitor thread has finished
[2025-12-13 09:22:54] 2025-12-13 08:22:24,603 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 09:22:54] 2025-12-13 08:22:24,693 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 09:22:54] 2025-12-13 08:22:24,819 | INFO     | [payload] validate_post thread has finished
[2025-12-13 09:22:54] 2025-12-13 08:22:24,853 | INFO     | [data] control thread has finished
[2025-12-13 09:22:54] 2025-12-13 08:22:24,853 | INFO     | all payload control threads have been joined
[2025-12-13 09:22:54] 2025-12-13 08:22:24,868 | INFO     | [job] job monitor thread has finished
[2025-12-13 09:22:54] 2025-12-13 08:22:25,070 | INFO     | [data] copytool_in thread has finished
[2025-12-13 09:22:54] 2025-12-13 08:22:25,126 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 09:22:54] 2025-12-13 08:22:25,255 | INFO     | [job] control thread has finished
[2025-12-13 09:22:54] 2025-12-13 08:22:25,588 | INFO     | [data] copytool_out thread has finished
[2025-12-13 09:22:54] 2025-12-13 08:22:25,711 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 09:22:54] 2025-12-13 08:22:25,859 | INFO     | [payload] control thread has finished
[2025-12-13 09:22:54] 2025-12-13 08:22:25,931 | INFO     | [job] validate thread has finished
[2025-12-13 09:22:54] 2025-12-13 08:22:26,031 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 09:22:54] 2025-12-13 08:22:26,093 | INFO     | [payload] failed_post thread has finished
[2025-12-13 09:22:54] 2025-12-13 08:22:29,133 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 09:22:54] 2025-12-13 08:22:43,670 | INFO     | [monitor] cgroup control has ended
[2025-12-13 09:22:54] 2025-12-13 08:22:45,541 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140369137035072)>', '<ExcThread(monitor, started 140367953377024)>']
[2025-12-13 09:22:54] 2025-12-13 08:22:50,567 | INFO     | all workflow threads have been joined
[2025-12-13 09:22:54] 2025-12-13 08:22:50,567 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 09:22:54] 2025-12-13 08:22:50,567 | INFO     | traces error code: 0
[2025-12-13 09:22:54] 2025-12-13 08:22:50,567 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 09:22:54] 2025-12-13 08:22:54,479 | INFO     | PID=7245 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-13 09:22:54] 2025-12-13 08:22:54,479 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 09:22:54] 2025-12-13 08:22:54,479 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 09:22:54] 2025-12-13 08:22:54,479 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 09:22:54] 2025-12-13 08:22:54,479 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 09:22:54] 2025-12-13 08:22:54,480 | INFO     | [monitor] control thread has ended
[2025-12-13 09:22:54] 2025-12-13 08:22:54,551 [wrapper] ==== pilot stdout END ====
[2025-12-13 09:22:54] 2025-12-13 08:22:54,555 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 09:22:54] 2025-12-13 08:22:54,559 [wrapper] pilotpid: 7245
[2025-12-13 09:22:54] 2025-12-13 08:22:54,562 [wrapper] Pilot exit status: 0
[2025-12-13 09:22:54] 2025-12-13 08:22:54,575 [wrapper] pandaids: 6929040468 6929040468
[2025-12-13 09:22:54] 2025-12-13 08:22:54,597 [wrapper] cleanup supervisor_pilot    7251 7246
[2025-12-13 09:22:54] 2025-12-13 08:22:54,601 [wrapper] Test setup, not cleaning
[2025-12-13 09:22:54] 2025-12-13 08:22:54,605 [wrapper] apfmon messages muted
[2025-12-13 09:22:54] 2025-12-13 08:22:54,608 [wrapper] ==== wrapper stdout END ====
[2025-12-13 09:22:54] 2025-12-13 08:22:54,612 [wrapper] ==== wrapper stderr END ====
[2025-12-13 09:22:54]  *** Error codes and diagnostics ***
[2025-12-13 09:22:54]     "exeErrorCode": 0,
[2025-12-13 09:22:54]     "exeErrorDiag": "",
[2025-12-13 09:22:54]     "pilotErrorCode": 1315,
[2025-12-13 09:22:54]     "pilotErrorDiag": "Unknown transform failure:PyJobTransforms.trfDecorators.exception_wrapper  CRITICAL Got a general exception in the outer exception handler: Failed to open file EVNT.47886829._000127.pool.root.1",
[2025-12-13 09:22:54]  *** Listing of results directory ***
[2025-12-13 09:22:54] total 53124
[2025-12-13 09:22:54] drwx------ 5 boinc boinc     4096 Dec  3 15:30 pilot3
[2025-12-13 09:22:54] -rw-r--r-- 1 boinc boinc   579449 Dec 13 07:26 pilot3.tar.gz
[2025-12-13 09:22:54] -rwx------ 1 boinc boinc    36322 Dec 13 07:50 runpilot2-wrapper.sh
[2025-12-13 09:22:54] -rw-r--r-- 1 boinc boinc     5112 Dec 13 07:51 queuedata.json
[2025-12-13 09:22:54] -rw-r--r-- 1 boinc boinc      100 Dec 13 09:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 09:22:54] -rwxr-xr-x 1 boinc boinc     7986 Dec 13 09:00 run_atlas
[2025-12-13 09:22:54] -rw-r--r-- 1 boinc boinc      105 Dec 13 09:00 job.xml
[2025-12-13 09:22:54] -rw-r--r-- 3 boinc boinc 25165824 Dec 13 09:00 EVNT.47886829._000127.pool.root.1
[2025-12-13 09:22:54] -rw-r--r-- 3 boinc boinc 25165824 Dec 13 09:00 ATLAS.root_0
[2025-12-13 09:22:54] drwxrwx--x 2 boinc boinc     4096 Dec 13 09:00 shared
[2025-12-13 09:22:54] -rw-r--r-- 2 boinc boinc   592410 Dec 13 09:00 input.tar.gz
[2025-12-13 09:22:54] -rw-r--r-- 2 boinc boinc    15847 Dec 13 09:00 start_atlas.sh
[2025-12-13 09:22:54] -rw-r--r-- 1 boinc boinc        0 Dec 13 09:00 boinc_setup_complete
[2025-12-13 09:22:54] -rw-r--r-- 1 boinc boinc        0 Dec 13 09:00 boinc_lockfile
[2025-12-13 09:22:54] -rw------- 1 boinc boinc  1516240 Dec 13 09:00 agis_ddmendpoints.agis.ALL.json
[2025-12-13 09:22:54] -rw-r--r-- 1 boinc boinc     6216 Dec 13 09:19 init_data.xml
[2025-12-13 09:22:54] -rw-r--r-- 1 boinc boinc     2537 Dec 13 09:19 pandaJob.out
[2025-12-13 09:22:54] -rw------- 1 boinc boinc   991736 Dec 13 09:19 agis_schedconf.cvmfs.json
[2025-12-13 09:22:54] -rw------- 1 boinc boinc      954 Dec 13 09:20 memory_monitor_summary.json
[2025-12-13 09:22:54] -rw------- 1 boinc boinc     9962 Dec 13 09:20 log.47886831._003119.job.log.tgz.1
[2025-12-13 09:22:54] -rw-r--r-- 1 boinc boinc      525 Dec 13 09:20 boinc_task_state.xml
[2025-12-13 09:22:54] -rw------- 1 boinc boinc     2796 Dec 13 09:22 heartbeat.json
[2025-12-13 09:22:54] -rw-r--r-- 1 boinc boinc     8192 Dec 13 09:22 boinc_mmap_file
[2025-12-13 09:22:54] -rw-r--r-- 1 boinc boinc       23 Dec 13 09:22 wrapper_checkpoint.txt
[2025-12-13 09:22:54] -rw------- 1 boinc boinc      744 Dec 13 09:22 pilotlog.txt
[2025-12-13 09:22:54] -rw------- 1 boinc boinc       97 Dec 13 09:22 pilot_heartbeat.json
[2025-12-13 09:22:54] -rw------- 1 boinc boinc    82174 Dec 13 09:22 log.47886831._003119.job.log.1
[2025-12-13 09:22:54] -rw------- 1 boinc boinc      188 Dec 13 09:22 output.list
[2025-12-13 09:22:54] -rw-r--r-- 1 boinc boinc      620 Dec 13 09:22 runtime_log
[2025-12-13 09:22:54] -rw------- 1 boinc boinc   102400 Dec 13 09:22 result.tar.gz
[2025-12-13 09:22:54] -rw-r--r-- 1 boinc boinc     8834 Dec 13 09:22 runtime_log.err
[2025-12-13 09:22:54] -rw------- 1 boinc boinc      778 Dec 13 09:22 i1fKDmydYo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDma6RKDmDiCiSm.diag
[2025-12-13 09:22:54] -rw-r--r-- 1 boinc boinc    12485 Dec 13 09:22 stderr.txt
[2025-12-13 09:22:54] No HITS result produced
[2025-12-13 09:22:54]  *** Contents of shared directory: ***
[2025-12-13 09:22:54] total 25272
[2025-12-13 09:22:54] -rw-r--r-- 3 boinc boinc 25165824 Dec 13 09:00 ATLAS.root_0
[2025-12-13 09:22:54] -rw-r--r-- 2 boinc boinc   592410 Dec 13 09:00 input.tar.gz
[2025-12-13 09:22:54] -rw-r--r-- 2 boinc boinc    15847 Dec 13 09:00 start_atlas.sh
[2025-12-13 09:22:54] -rw------- 1 boinc boinc   102400 Dec 13 09:22 result.tar.gz
09:22:55 (2889): run_atlas exited; CPU time 10.846739
09:22:55 (2889): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN