Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:16:57 (2945): wrapper (7.7.26015): starting
08:16:57 (2945): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 08:16:57] Arguments: --nthreads 8
[2025-12-13 08:16:57] Threads: 8
[2025-12-13 08:16:57] Checking for CVMFS
[2025-12-13 08:16:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 08:17:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 08:17:01] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 08:17:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 08:17:04] 2.11.2.0 29536 112299 123660 153953 2 11 20293042 25165824 4629 130560 12 32181046 99.868 20308149 1967 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-13 08:17:04] CVMFS is ok
[2025-12-13 08:17:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 08:17:04] Checking for apptainer binary...
[2025-12-13 08:17:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 08:17:04] Running /usr/bin/apptainer --version
[2025-12-13 08:17:04] apptainer version 1.3.2-1.el7
[2025-12-13 08:17:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 08:17:10] cg-vwn448.simple-grid.lan
[2025-12-13 08:17:10] apptainer works
[2025-12-13 08:17:10] Set ATHENA_PROC_NUMBER=8
[2025-12-13 08:17:10] Set ATHENA_CORE_NUMBER=8
[2025-12-13 08:17:10] Starting ATLAS job with PandaID=6929038510
[2025-12-13 08:17:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/25 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 12:50:20]  *** The last 200 lines of the pilot log: ***
[2025-12-13 12:50:20] 2025-12-13 11:49:22,237 | INFO     | time since job start (16120s) is within the limit (174528.0s)
[2025-12-13 12:50:20] 2025-12-13 11:49:23,215 | INFO     | monitor loop #1114: job 0:6929038510 is in state 'finished'
[2025-12-13 12:50:20] 2025-12-13 11:49:23,215 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 12:50:20] 2025-12-13 11:49:24,244 | INFO     | time since job start (16122s) is within the limit (174528.0s)
[2025-12-13 12:50:20] 2025-12-13 11:49:25,720 | INFO     | monitor loop #1115: job 0:6929038510 is in state 'finished'
[2025-12-13 12:50:20] 2025-12-13 11:49:25,720 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 12:50:20] 2025-12-13 11:49:26,251 | INFO     | time since job start (16124s) is within the limit (174528.0s)
[2025-12-13 12:50:20] 2025-12-13 11:49:26,678 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-13 12:50:20] 2025-12-13 11:49:26,679 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-13 12:50:20] 2025-12-13 11:49:26,682 | INFO     | using path: /var/lib/boinc/slots/25/PanDA_Pilot-6929038510/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 12:50:20] 2025-12-13 11:49:26,682 | INFO     | extracted standard info from prmon json
[2025-12-13 12:50:20] 2025-12-13 11:49:26,683 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 12:50:20] 2025-12-13 11:49:26,683 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 12:50:20] 2025-12-13 11:49:26,683 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 12:50:20] 2025-12-13 11:49:26,683 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 12:50:20] 2025-12-13 11:49:26,692 | INFO     | fitting pss+swap vs Time
[2025-12-13 12:50:20] 2025-12-13 11:49:26,693 | INFO     | sum of square deviations: 5513070810.0
[2025-12-13 12:50:20] 2025-12-13 11:49:26,695 | INFO     | sum of deviations: -27319625798.000004
[2025-12-13 12:50:20] 2025-12-13 11:49:26,695 | INFO     | mean x: 1765618475.0
[2025-12-13 12:50:20] 2025-12-13 11:49:26,696 | INFO     | mean y: 2512706.1187739465
[2025-12-13 12:50:20] 2025-12-13 11:49:26,696 | INFO     | intersect: 8751908043.385525
[2025-12-13 12:50:20] 2025-12-13 11:49:26,696 | INFO     | chi2: 1.7954227484965983
[2025-12-13 12:50:20] 2025-12-13 11:49:26,700 | INFO     | sum of square deviations: 5202255680.0
[2025-12-13 12:50:20] 2025-12-13 11:49:26,702 | INFO     | sum of deviations: -26656351600.5
[2025-12-13 12:50:20] 2025-12-13 11:49:26,702 | INFO     | mean x: 1765618322.5
[2025-12-13 12:50:20] 2025-12-13 11:49:26,703 | INFO     | mean y: 2513032.38671875
[2025-12-13 12:50:20] 2025-12-13 11:49:26,703 | INFO     | intersect: 9049539109.514286
[2025-12-13 12:50:20] 2025-12-13 11:49:26,703 | INFO     | chi2: 1.7938265983605413
[2025-12-13 12:50:20] 2025-12-13 11:49:26,703 | INFO     | current chi2=1.7938265983605413 (change=0.0889010756599588 %)
[2025-12-13 12:50:20] 2025-12-13 11:49:26,703 | INFO     | right removable region: 255
[2025-12-13 12:50:20] 2025-12-13 11:49:26,704 | INFO     | sum of square deviations: 5202255680.0
[2025-12-13 12:50:20] 2025-12-13 11:49:26,710 | INFO     | sum of deviations: -68990744989.5
[2025-12-13 12:50:20] 2025-12-13 11:49:26,710 | INFO     | mean x: 1765618627.5
[2025-12-13 12:50:20] 2025-12-13 11:49:26,710 | INFO     | mean y: 2532982.01171875
[2025-12-13 12:50:20] 2025-12-13 11:49:26,710 | INFO     | intersect: 23417634424.808067
[2025-12-13 12:50:20] 2025-12-13 11:49:26,711 | INFO     | chi2: 0.2428208589396242
[2025-12-13 12:50:20] 2025-12-13 11:49:26,711 | INFO     | current chi2=0.2428208589396242 (change=86.47556074785446 %)
[2025-12-13 12:50:20] 2025-12-13 11:49:26,711 | INFO     | sum of square deviations: 4903347750.0
[2025-12-13 12:50:20] 2025-12-13 11:49:26,713 | INFO     | sum of deviations: -66969765610.0
[2025-12-13 12:50:20] 2025-12-13 11:49:26,714 | INFO     | mean x: 1765618780.0
[2025-12-13 12:50:20] 2025-12-13 11:49:26,714 | INFO     | mean y: 2531923.346613546
[2025-12-13 12:50:20] 2025-12-13 11:49:26,714 | INFO     | intersect: 24117296341.84297
[2025-12-13 12:50:20] 2025-12-13 11:49:26,714 | INFO     | chi2: 0.22642255271018297
[2025-12-13 12:50:20] 2025-12-13 11:49:26,714 | INFO     | current chi2=0.22642255271018297 (change=6.753252706975464 %)
[2025-12-13 12:50:20] 2025-12-13 11:49:26,714 | INFO     | left removable region: 20
[2025-12-13 12:50:20] 2025-12-13 11:49:26,715 | INFO     | sum of square deviations: 4024149870.0
[2025-12-13 12:50:20] 2025-12-13 11:49:26,720 | INFO     | sum of deviations: -50502710629.00001
[2025-12-13 12:50:20] 2025-12-13 11:49:26,720 | INFO     | mean x: 1765618902.0
[2025-12-13 12:50:20] 2025-12-13 11:49:26,720 | INFO     | mean y: 2524381.9574468085
[2025-12-13 12:50:20] 2025-12-13 11:49:26,721 | INFO     | intersect: 22160879157.347244
[2025-12-13 12:50:20] 2025-12-13 11:49:26,721 | INFO     | chi2: 0.2069275280182497
[2025-12-13 12:50:20] 2025-12-13 11:49:26,721 | INFO     | current memory leak: -12.55 B/s (using 235 data points, chi2=0.21)
[2025-12-13 12:50:20] 2025-12-13 11:49:26,722 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2025-12-13 12:50:20] 2025-12-13 11:49:26,722 | INFO     | ..............................
[2025-12-13 12:50:20] 2025-12-13 11:49:26,722 | INFO     | . Timing measurements:
[2025-12-13 12:50:20] 2025-12-13 11:49:26,723 | INFO     | . get job = 0 s
[2025-12-13 12:50:20] 2025-12-13 11:49:26,723 | INFO     | . initial setup = 6 s
[2025-12-13 12:50:20] 2025-12-13 11:49:26,723 | INFO     | . payload setup = 14 s
[2025-12-13 12:50:20] 2025-12-13 11:49:26,723 | INFO     | . stage-in = 0 s
[2025-12-13 12:50:20] 2025-12-13 11:49:26,723 | INFO     | . payload execution = 15939 s
[2025-12-13 12:50:20] 2025-12-13 11:49:26,723 | INFO     | . stage-out = 3 s
[2025-12-13 12:50:20] 2025-12-13 11:49:26,723 | INFO     | . log creation = 0 s
[2025-12-13 12:50:20] 2025-12-13 11:49:26,723 | INFO     | ..............................
[2025-12-13 12:50:20] 2025-12-13 11:49:26,869 | INFO     | 
[2025-12-13 12:50:20] 2025-12-13 11:49:26,869 | INFO     | job summary report
[2025-12-13 12:50:20] 2025-12-13 11:49:26,869 | INFO     | --------------------------------------------------
[2025-12-13 12:50:20] 2025-12-13 11:49:26,869 | INFO     | PanDA job id: 6929038510
[2025-12-13 12:50:20] 2025-12-13 11:49:26,869 | INFO     | task id: 47886933
[2025-12-13 12:50:20] 2025-12-13 11:49:26,869 | INFO     | errors: (none)
[2025-12-13 12:50:20] 2025-12-13 11:49:26,870 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 12:50:20] 2025-12-13 11:49:26,870 | INFO     | pilot state: finished 
[2025-12-13 12:50:20] 2025-12-13 11:49:26,870 | INFO     | transexitcode: 0
[2025-12-13 12:50:20] 2025-12-13 11:49:26,870 | INFO     | exeerrorcode: 0
[2025-12-13 12:50:20] 2025-12-13 11:49:26,870 | INFO     | exeerrordiag: 
[2025-12-13 12:50:20] 2025-12-13 11:49:26,870 | INFO     | exitcode: 0
[2025-12-13 12:50:20] 2025-12-13 11:49:26,870 | INFO     | exitmsg: OK
[2025-12-13 12:50:20] 2025-12-13 11:49:26,870 | INFO     | cpuconsumptiontime: 58963 s
[2025-12-13 12:50:20] 2025-12-13 11:49:26,870 | INFO     | nevents: 400
[2025-12-13 12:50:20] 2025-12-13 11:49:26,870 | INFO     | neventsw: 0
[2025-12-13 12:50:20] 2025-12-13 11:49:26,871 | INFO     | pid: 13653
[2025-12-13 12:50:20] 2025-12-13 11:49:26,871 | INFO     | pgrp: 13653
[2025-12-13 12:50:20] 2025-12-13 11:49:26,871 | INFO     | corecount: 8
[2025-12-13 12:50:20] 2025-12-13 11:49:26,871 | INFO     | event service: False
[2025-12-13 12:50:20] 2025-12-13 11:49:26,871 | INFO     | sizes: {0: 2283737, 1: 2283992, 2: 2283992, 12: 2284020, 23: 2284048, 34: 2284076, 45: 2284232, 52: 2284522, 55: 2284550, 15957: 2315424, 15961: 2324760, 16057: 23
[2025-12-13 12:50:20] 2025-12-13 11:49:26,871 | INFO     | --------------------------------------------------
[2025-12-13 12:50:20] 2025-12-13 11:49:26,871 | INFO     | 
[2025-12-13 12:50:20] 2025-12-13 11:49:26,871 | INFO     | executing command: ls -lF /var/lib/boinc/slots/25
[2025-12-13 12:50:20] 2025-12-13 11:49:27,367 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 12:50:20] 2025-12-13 11:49:27,368 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 12:50:20] 2025-12-13 11:49:27,368 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 12:50:20] 2025-12-13 11:49:27,368 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 12:50:20] 2025-12-13 11:49:27,368 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 12:50:20] 2025-12-13 11:49:27,368 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 12:50:20] 2025-12-13 11:49:27,368 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 12:50:20] 2025-12-13 11:49:27,368 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 12:50:20] 2025-12-13 11:49:27,368 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 12:50:20] 2025-12-13 11:49:27,369 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 12:50:20] 2025-12-13 11:49:27,369 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 12:50:20] 2025-12-13 11:49:27,369 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 12:50:20] 2025-12-13 11:49:27,369 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 12:50:20] 2025-12-13 11:49:27,369 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 12:50:20] 2025-12-13 11:49:27,369 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 12:50:20] 2025-12-13 11:49:27,369 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 12:50:20] 2025-12-13 11:49:27,369 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 12:50:20] 2025-12-13 11:49:27,370 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 12:50:20] 2025-12-13 11:49:27,370 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 12:50:20] 2025-12-13 11:49:27,370 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 12:50:20] 2025-12-13 11:49:27,370 | INFO     | job 6929038510 has completed (purged errors)
[2025-12-13 12:50:20] 2025-12-13 11:49:27,370 | INFO     | overall cleanup function is called
[2025-12-13 12:50:20] 2025-12-13 11:49:28,380 | INFO     | --- collectZombieJob: --- 10, [13653]
[2025-12-13 12:50:20] 2025-12-13 11:49:28,380 | INFO     | zombie collector waiting for pid 13653
[2025-12-13 12:50:20] 2025-12-13 11:49:28,380 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 12:50:20] 2025-12-13 11:49:28,380 | INFO     | collected zombie processes
[2025-12-13 12:50:20] 2025-12-13 11:49:28,380 | INFO     | will attempt to kill all subprocesses of pid=13653
[2025-12-13 12:50:20] 2025-12-13 11:49:28,505 | INFO     | process IDs to be killed: [13653] (in reverse order)
[2025-12-13 12:50:20] 2025-12-13 11:49:28,887 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 12:50:20] 2025-12-13 11:49:28,887 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 12:50:20] 2025-12-13 11:49:28,891 | INFO     | did not find any defunct processes belonging to 13653
[2025-12-13 12:50:20] 2025-12-13 11:49:28,894 | INFO     | did not find any defunct processes belonging to 13653
[2025-12-13 12:50:20] 2025-12-13 11:49:28,894 | INFO     | ready for new job
[2025-12-13 12:50:20] 2025-12-13 11:49:28,895 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 12:50:20] 2025-12-13 11:49:28,897 | INFO     | ***************************************
[2025-12-13 12:50:20] 2025-12-13 11:49:28,897 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 12:50:20] 2025-12-13 11:49:28,897 | INFO     | ***************************************
[2025-12-13 12:50:20] 2025-12-13 11:49:28,897 | INFO     | 
[2025-12-13 12:50:20] 2025-12-13 11:49:28,898 | INFO     | pilot is running in a VM
[2025-12-13 12:50:20] 2025-12-13 11:49:28,898 | INFO     | architecture information:
[2025-12-13 12:50:20] 2025-12-13 11:49:28,899 | INFO     | executing command: cat /etc/os-release
[2025-12-13 12:50:20] 2025-12-13 11:49:28,939 | INFO     | cat /etc/os-release:
[2025-12-13 12:50:20] NAME="CentOS Linux"
[2025-12-13 12:50:20] VERSION="7 (Core)"
[2025-12-13 12:50:20] ID="centos"
[2025-12-13 12:50:20] ID_LIKE="rhel fedora"
[2025-12-13 12:50:20] VERSION_ID="7"
[2025-12-13 12:50:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 12:50:20] ANSI_COLOR="0;31"
[2025-12-13 12:50:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 12:50:20] HOME_URL="https://www.centos.org/"
[2025-12-13 12:50:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 12:50:20] 
[2025-12-13 12:50:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 12:50:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 12:50:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 12:50:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 12:50:20] 
[2025-12-13 12:50:20] 2025-12-13 11:49:28,940 | INFO     | ***************************************
[2025-12-13 12:50:20] 2025-12-13 11:49:29,443 | INFO     | executing command: df -mP /var/lib/boinc/slots/25
[2025-12-13 12:50:20] 2025-12-13 11:49:29,580 | INFO     | sufficient remaining disk space (496515416064 B)
[2025-12-13 12:50:20] 2025-12-13 11:49:29,581 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 12:50:20] 2025-12-13 11:49:29,581 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 12:50:20] 2025-12-13 11:49:29,581 | INFO     | update_server=False
[2025-12-13 12:50:20] 2025-12-13 11:49:29,581 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 12:50:20] 2025-12-13 11:49:29,582 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 12:50:20] 2025-12-13 11:49:29,582 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 12:50:20] 2025-12-13 11:49:29,582 | INFO     | aborting loop
[2025-12-13 12:50:20] 2025-12-13 11:49:29,709 | INFO     | all data control threads have been joined
[2025-12-13 12:50:20] 2025-12-13 11:49:30,035 | INFO     | all payload control threads have been joined
[2025-12-13 12:50:20] 2025-12-13 11:49:30,453 | INFO     | all job control threads have been joined
[2025-12-13 12:50:20] 2025-12-13 11:49:30,587 | INFO     | [job] retrieve thread has finished
[2025-12-13 12:50:20] 2025-12-13 11:49:30,588 | INFO     | [job] job monitor thread has finished
[2025-12-13 12:50:20] 2025-12-13 11:49:30,629 | INFO     | [payload] failed_post thread has finished
[2025-12-13 12:50:20] 2025-12-13 11:49:30,714 | INFO     | [data] control thread has finished
[2025-12-13 12:50:20] 2025-12-13 11:49:30,955 | INFO     | [payload] validate_post thread has finished
[2025-12-13 12:50:20] 2025-12-13 11:49:30,976 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 12:50:20] 2025-12-13 11:49:31,041 | INFO     | [payload] control thread has finished
[2025-12-13 12:50:20] 2025-12-13 11:49:31,248 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 12:50:20] 2025-12-13 11:49:31,256 | INFO     | [job] validate thread has finished
[2025-12-13 12:50:20] 2025-12-13 11:49:31,459 | INFO     | [job] control thread has finished
[2025-12-13 12:50:20] 2025-12-13 11:49:31,588 | INFO     | [data] copytool_out thread has finished
[2025-12-13 12:50:20] 2025-12-13 11:49:31,622 | INFO     | [data] copytool_in thread has finished
[2025-12-13 12:50:20] 2025-12-13 11:49:31,785 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 12:50:20] 2025-12-13 11:49:31,857 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 12:50:20] 2025-12-13 11:49:31,882 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 12:50:20] 2025-12-13 11:49:32,888 | INFO     | [job] queue monitor thread has finished
[2025-12-13 12:50:20] 2025-12-13 11:49:35,866 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 12:50:20] 2025-12-13 11:49:40,588 | INFO     | job.realtimelogging is not enabled
[2025-12-13 12:50:20] 2025-12-13 11:49:41,594 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 12:50:20] 2025-12-13 11:49:59,502 | INFO     | PID=7030 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-13 12:50:20] 2025-12-13 11:49:59,502 | INFO     | .. there are 9 such processes running
[2025-12-13 12:50:20] 2025-12-13 11:49:59,502 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 12:50:20] 2025-12-13 11:49:59,502 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 12:50:20] 2025-12-13 11:49:59,502 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 12:50:20] 2025-12-13 11:50:09,502 | INFO     | [monitor] cgroup control has ended
[2025-12-13 12:50:20] 2025-12-13 11:50:10,872 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140624700512064)>', '<ExcThread(monitor, started 140623730435840)>']
[2025-12-13 12:50:20] 2025-12-13 11:50:11,575 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 12:50:20] 2025-12-13 11:50:11,575 | INFO     | [monitor] control thread has ended
[2025-12-13 12:50:20] 2025-12-13 11:50:15,898 | INFO     | all workflow threads have been joined
[2025-12-13 12:50:20] 2025-12-13 11:50:15,898 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 12:50:20] 2025-12-13 11:50:15,898 | INFO     | traces error code: 0
[2025-12-13 12:50:20] 2025-12-13 11:50:15,898 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 12:50:20] 2025-12-13 11:50:16,237 [wrapper] ==== pilot stdout END ====
[2025-12-13 12:50:20] 2025-12-13 11:50:16,341 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 12:50:20] 2025-12-13 11:50:16,453 [wrapper] pilotpid: 7030
[2025-12-13 12:50:20] 2025-12-13 11:50:16,540 [wrapper] Pilot exit status: 0
[2025-12-13 12:50:20] 2025-12-13 11:50:16,979 [wrapper] pandaids: 6929038510
[2025-12-13 12:50:20] 2025-12-13 11:50:17,975 [wrapper] cleanup supervisor_pilot 21757 7031
[2025-12-13 12:50:20] 2025-12-13 11:50:18,109 [wrapper] Test setup, not cleaning
[2025-12-13 12:50:20] 2025-12-13 11:50:18,250 [wrapper] apfmon messages muted
[2025-12-13 12:50:20] 2025-12-13 11:50:18,399 [wrapper] ==== wrapper stdout END ====
[2025-12-13 12:50:20] 2025-12-13 11:50:18,534 [wrapper] ==== wrapper stderr END ====
[2025-12-13 12:50:20]  *** Error codes and diagnostics ***
[2025-12-13 12:50:20]     "exeErrorCode": 0,
[2025-12-13 12:50:20]     "exeErrorDiag": "",
[2025-12-13 12:50:20]     "pilotErrorCode": 0,
[2025-12-13 12:50:20]     "pilotErrorDiag": "",
[2025-12-13 12:50:20]  *** Listing of results directory ***
[2025-12-13 12:50:20] total 338604
[2025-12-13 12:50:20] -rw-r--r--. 1 boinc boinc    579449 Dec 13 07:26 pilot3.tar.gz
[2025-12-13 12:50:20] -rwx------. 1 boinc boinc     36322 Dec 13 07:48 runpilot2-wrapper.sh
[2025-12-13 12:50:20] -rw-r--r--. 1 boinc boinc      5112 Dec 13 07:49 queuedata.json
[2025-12-13 12:50:20] -rw-r--r--. 1 boinc boinc       100 Dec 13 08:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 12:50:20] -rwxr-xr-x. 1 boinc boinc      7986 Dec 13 08:16 run_atlas
[2025-12-13 12:50:20] -rw-r--r--. 1 boinc boinc       105 Dec 13 08:16 job.xml
[2025-12-13 12:50:20] -rw-r--r--. 2 boinc boinc 190943255 Dec 13 08:16 EVNT.47886929._000045.pool.root.1
[2025-12-13 12:50:20] -rw-r--r--. 1 boinc boinc      6393 Dec 13 08:16 init_data.xml
[2025-12-13 12:50:20] -rw-r--r--. 2 boinc boinc     15847 Dec 13 08:16 start_atlas.sh
[2025-12-13 12:50:20] drwxrwx--x. 2 boinc boinc        68 Dec 13 08:16 shared
[2025-12-13 12:50:20] -rw-r--r--. 2 boinc boinc    592387 Dec 13 08:16 input.tar.gz
[2025-12-13 12:50:20] -rw-r--r--. 1 boinc boinc         0 Dec 13 08:16 boinc_lockfile
[2025-12-13 12:50:20] -rw-r--r--. 1 boinc boinc      2512 Dec 13 08:17 pandaJob.out
[2025-12-13 12:50:20] -rw-------. 1 boinc boinc    991736 Dec 13 08:20 agis_schedconf.cvmfs.json
[2025-12-13 12:50:20] drwx------. 5 boinc boinc      4096 Dec 13 08:20 pilot3
[2025-12-13 12:50:20] -rw-------. 1 boinc boinc 146572585 Dec 13 12:46 HITS.47886933._001120.pool.root.1
[2025-12-13 12:50:20] -rw-r--r--. 1 boinc boinc       531 Dec 13 12:46 boinc_task_state.xml
[2025-12-13 12:50:20] -rw-------. 1 boinc boinc      1025 Dec 13 12:47 memory_monitor_summary.json
[2025-12-13 12:50:20] -rw-------. 1 boinc boinc   1516240 Dec 13 12:47 agis_ddmendpoints.agis.ALL.json
[2025-12-13 12:50:20] -rw-------. 1 boinc boinc    490055 Dec 13 12:47 log.47886933._001120.job.log.tgz.1
[2025-12-13 12:50:20] -rw-------. 1 boinc boinc        95 Dec 13 12:49 pilot_heartbeat.json
[2025-12-13 12:50:20] -rw-------. 1 boinc boinc      7774 Dec 13 12:49 heartbeat.json
[2025-12-13 12:50:20] -rw-------. 1 boinc boinc      4956 Dec 13 12:50 pilotlog.txt
[2025-12-13 12:50:20] -rw-r--r--. 1 boinc boinc      8192 Dec 13 12:50 boinc_mmap_file
[2025-12-13 12:50:20] -rw-r--r--. 1 boinc boinc        28 Dec 13 12:50 wrapper_checkpoint.txt
[2025-12-13 12:50:20] -rw-------. 1 boinc boinc   2162942 Dec 13 12:50 log.47886933._001120.job.log.1
[2025-12-13 12:50:20] -rw-------. 1 boinc boinc       357 Dec 13 12:50 output.list
[2025-12-13 12:50:20] -rw-r--r--. 1 boinc boinc       620 Dec 13 12:50 runtime_log
[2025-12-13 12:50:20] -rw-------. 1 boinc boinc   2672640 Dec 13 12:50 result.tar.gz
[2025-12-13 12:50:20] -rw-------. 1 boinc boinc       657 Dec 13 12:50 t2eKDm7bYo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1yNKDmHSXwOn.diag
[2025-12-13 12:50:20] -rw-r--r--. 1 boinc boinc      8833 Dec 13 12:50 runtime_log.err
[2025-12-13 12:50:20] -rw-r--r--. 1 boinc boinc     20973 Dec 13 12:50 stderr.txt
[2025-12-13 12:50:20] HITS file was successfully produced:
[2025-12-13 12:50:20] -rw-------. 1 boinc boinc 146572585 Dec 13 12:46 shared/HITS.pool.root.1
[2025-12-13 12:50:20]  *** Contents of shared directory: ***
[2025-12-13 12:50:20] total 332820
[2025-12-13 12:50:20] -rw-r--r--. 2 boinc boinc 190943255 Dec 13 08:16 ATLAS.root_0
[2025-12-13 12:50:20] -rw-r--r--. 2 boinc boinc     15847 Dec 13 08:16 start_atlas.sh
[2025-12-13 12:50:20] -rw-r--r--. 2 boinc boinc    592387 Dec 13 08:16 input.tar.gz
[2025-12-13 12:50:20] -rw-------. 1 boinc boinc 146572585 Dec 13 12:46 HITS.pool.root.1
[2025-12-13 12:50:20] -rw-------. 1 boinc boinc   2672640 Dec 13 12:50 result.tar.gz
12:50:22 (2945): run_atlas exited; CPU time 59184.811073
12:50:22 (2945): called boinc_finish(0)

</stderr_txt>
]]>

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