Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:16:07 (1305456): wrapper (7.7.26015): starting
17:16:07 (1305456): wrapper: running run_atlas (--nthreads 4)
[2025-12-14 17:16:07] Arguments: --nthreads 4
[2025-12-14 17:16:07] Threads: 4
[2025-12-14 17:16:07] Checking for CVMFS
[2025-12-14 17:16:07] No cvmfs_config command found, will try listing directly
[2025-12-14 17:16:07] CVMFS is ok
[2025-12-14 17:16:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 17:16:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 17:16:07] Further information can be found at the LHC@home message board.
[2025-12-14 17:16:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 17:16:07] Checking for apptainer binary...
[2025-12-14 17:16:07] which: no apptainer in ((null))
[2025-12-14 17:16:07] apptainer is not installed, using version from CVMFS
[2025-12-14 17:16:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 17:16:07] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot96/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-12-14 17:16:07] apptainer works
[2025-12-14 17:16:07] Set ATHENA_PROC_NUMBER=4
[2025-12-14 17:16:07] Set ATHENA_CORE_NUMBER=4
[2025-12-14 17:16:07] Starting ATLAS job with PandaID=6929039880
[2025-12-14 17:16:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot96/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 20:06:21]  *** The last 200 lines of the pilot log: ***
[2025-12-14 20:06:21] 2025-12-14 19:04:49,155 | INFO     | .. there are 11 such processes running
[2025-12-14 20:06:21] 2025-12-14 19:04:50,156 | INFO     | time since job start (10108s) is within the limit (174528.0s)
[2025-12-14 20:06:21] 2025-12-14 19:04:51,581 | INFO     | monitor loop #688: job 0:6929039880 is in state 'finished'
[2025-12-14 20:06:21] 2025-12-14 19:04:51,581 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 20:06:21] 2025-12-14 19:04:52,162 | INFO     | time since job start (10110s) is within the limit (174528.0s)
[2025-12-14 20:06:21] 2025-12-14 19:04:54,084 | INFO     | monitor loop #689: job 0:6929039880 is in state 'finished'
[2025-12-14 20:06:21] 2025-12-14 19:04:54,084 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 20:06:21] 2025-12-14 19:04:54,168 | INFO     | time since job start (10112s) is within the limit (174528.0s)
[2025-12-14 20:06:21] 2025-12-14 19:04:56,174 | INFO     | time since job start (10114s) is within the limit (174528.0s)
[2025-12-14 20:06:21] 2025-12-14 19:04:56,414 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-14 20:06:21] 2025-12-14 19:04:56,436 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2629.4634609375007
[2025-12-14 20:06:21] 2025-12-14 19:04:56,461 | INFO     | using path: /scratch/boinc/var/slot96/slots/0/PanDA_Pilot-6929039880/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 20:06:21] 2025-12-14 19:04:56,461 | INFO     | extracted standard info from prmon json
[2025-12-14 20:06:21] 2025-12-14 19:04:56,462 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 20:06:21] 2025-12-14 19:04:56,462 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 20:06:21] 2025-12-14 19:04:56,462 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 20:06:21] 2025-12-14 19:04:56,462 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 20:06:21] 2025-12-14 19:04:56,468 | INFO     | fitting pss+swap vs Time
[2025-12-14 20:06:21] 2025-12-14 19:04:56,468 | INFO     | sum of square deviations: 1392881930.0
[2025-12-14 20:06:21] 2025-12-14 19:04:56,469 | INFO     | sum of deviations: -48136886690.00001
[2025-12-14 20:06:21] 2025-12-14 19:04:56,469 | INFO     | mean x: 1765734019.0
[2025-12-14 20:06:21] 2025-12-14 19:04:56,469 | INFO     | mean y: 2425062.9696969697
[2025-12-14 20:06:21] 2025-12-14 19:04:56,470 | INFO     | intersect: 61024782067.25743
[2025-12-14 20:06:21] 2025-12-14 19:04:56,470 | INFO     | chi2: 1.5664418181398916
[2025-12-14 20:06:21] 2025-12-14 19:04:56,470 | INFO     | sum of square deviations: 1270051720.0
[2025-12-14 20:06:21] 2025-12-14 19:04:56,471 | INFO     | sum of deviations: -45579482216.500015
[2025-12-14 20:06:21] 2025-12-14 19:04:56,471 | INFO     | mean x: 1765733866.5
[2025-12-14 20:06:21] 2025-12-14 19:04:56,471 | INFO     | mean y: 2428239.05625
[2025-12-14 20:06:21] 2025-12-14 19:04:56,471 | INFO     | intersect: 63370899065.74712
[2025-12-14 20:06:21] 2025-12-14 19:04:56,472 | INFO     | chi2: 1.5575631066652282
[2025-12-14 20:06:21] 2025-12-14 19:04:56,472 | INFO     | current chi2=1.5575631066652282 (change=0.56680761275938 %)
[2025-12-14 20:06:21] 2025-12-14 19:04:56,472 | INFO     | right removable region: 159
[2025-12-14 20:06:21] 2025-12-14 19:04:56,472 | INFO     | sum of square deviations: 1270051720.0
[2025-12-14 20:06:21] 2025-12-14 19:04:56,473 | INFO     | sum of deviations: -64349698795.00001
[2025-12-14 20:06:21] 2025-12-14 19:04:56,473 | INFO     | mean x: 1765734171.5
[2025-12-14 20:06:21] 2025-12-14 19:04:56,473 | INFO     | mean y: 2444715.4
[2025-12-14 20:06:21] 2025-12-14 19:04:56,473 | INFO     | intersect: 89466881713.33885
[2025-12-14 20:06:21] 2025-12-14 19:04:56,474 | INFO     | chi2: 0.31046144183221636
[2025-12-14 20:06:21] 2025-12-14 19:04:56,474 | INFO     | current chi2=0.31046144183221636 (change=80.18046771753828 %)
[2025-12-14 20:06:21] 2025-12-14 19:04:56,474 | INFO     | sum of square deviations: 1154663510.0
[2025-12-14 20:06:21] 2025-12-14 19:04:56,475 | INFO     | sum of deviations: -58195804440.99998
[2025-12-14 20:06:21] 2025-12-14 19:04:56,475 | INFO     | mean x: 1765734324.0
[2025-12-14 20:06:21] 2025-12-14 19:04:56,475 | INFO     | mean y: 2436576.5677419356
[2025-12-14 20:06:21] 2025-12-14 19:04:56,475 | INFO     | intersect: 88996614122.08081
[2025-12-14 20:06:21] 2025-12-14 19:04:56,476 | INFO     | chi2: 0.31010927381370723
[2025-12-14 20:06:21] 2025-12-14 19:04:56,476 | INFO     | current chi2=0.31010927381370723 (change=0.11343373799682602 %)
[2025-12-14 20:06:21] 2025-12-14 19:04:56,476 | INFO     | left removable region: 20
[2025-12-14 20:06:21] 2025-12-14 19:04:56,476 | INFO     | sum of square deviations: 832722590.0
[2025-12-14 20:06:21] 2025-12-14 19:04:56,477 | INFO     | sum of deviations: -42891049194.0
[2025-12-14 20:06:21] 2025-12-14 19:04:56,477 | INFO     | mean x: 1765734446.0
[2025-12-14 20:06:21] 2025-12-14 19:04:56,477 | INFO     | mean y: 2421984.3165467624
[2025-12-14 20:06:21] 2025-12-14 19:04:56,477 | INFO     | intersect: 90950120409.22217
[2025-12-14 20:06:21] 2025-12-14 19:04:56,477 | INFO     | chi2: 0.29120980062090795
[2025-12-14 20:06:21] 2025-12-14 19:04:56,478 | INFO     | current memory leak: -51.51 B/s (using 139 data points, chi2=0.29)
[2025-12-14 20:06:21] 2025-12-14 19:04:56,478 | INFO     | could have reported an average CPU frequency of 2675 MHz (9 samples)
[2025-12-14 20:06:21] 2025-12-14 19:04:56,478 | INFO     | ..............................
[2025-12-14 20:06:21] 2025-12-14 19:04:56,478 | INFO     | . Timing measurements:
[2025-12-14 20:06:21] 2025-12-14 19:04:56,478 | INFO     | . get job = 0 s
[2025-12-14 20:06:21] 2025-12-14 19:04:56,478 | INFO     | . initial setup = 1 s
[2025-12-14 20:06:21] 2025-12-14 19:04:56,478 | INFO     | . payload setup = 9 s
[2025-12-14 20:06:21] 2025-12-14 19:04:56,479 | INFO     | . stage-in = 0 s
[2025-12-14 20:06:21] 2025-12-14 19:04:56,479 | INFO     | . payload execution = 10068 s
[2025-12-14 20:06:21] 2025-12-14 19:04:56,479 | INFO     | . stage-out = 0 s
[2025-12-14 20:06:21] 2025-12-14 19:04:56,479 | INFO     | . log creation = 0 s
[2025-12-14 20:06:21] 2025-12-14 19:04:56,479 | INFO     | ..............................
[2025-12-14 20:06:21] 2025-12-14 19:04:56,575 | INFO     | 
[2025-12-14 20:06:21] 2025-12-14 19:04:56,575 | INFO     | job summary report
[2025-12-14 20:06:21] 2025-12-14 19:04:56,575 | INFO     | --------------------------------------------------
[2025-12-14 20:06:21] 2025-12-14 19:04:56,576 | INFO     | PanDA job id: 6929039880
[2025-12-14 20:06:21] 2025-12-14 19:04:56,576 | INFO     | task id: 47886831
[2025-12-14 20:06:21] 2025-12-14 19:04:56,576 | INFO     | errors: (none)
[2025-12-14 20:06:21] 2025-12-14 19:04:56,576 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 20:06:21] 2025-12-14 19:04:56,576 | INFO     | pilot state: finished 
[2025-12-14 20:06:21] 2025-12-14 19:04:56,576 | INFO     | transexitcode: 0
[2025-12-14 20:06:21] 2025-12-14 19:04:56,576 | INFO     | exeerrorcode: 0
[2025-12-14 20:06:21] 2025-12-14 19:04:56,576 | INFO     | exeerrordiag: 
[2025-12-14 20:06:21] 2025-12-14 19:04:56,576 | INFO     | exitcode: 0
[2025-12-14 20:06:21] 2025-12-14 19:04:56,576 | INFO     | exitmsg: OK
[2025-12-14 20:06:21] 2025-12-14 19:04:56,576 | INFO     | cpuconsumptiontime: 38729 s
[2025-12-14 20:06:21] 2025-12-14 19:04:56,576 | INFO     | nevents: 400
[2025-12-14 20:06:21] 2025-12-14 19:04:56,577 | INFO     | neventsw: 0
[2025-12-14 20:06:21] 2025-12-14 19:04:56,577 | INFO     | pid: 1316847
[2025-12-14 20:06:21] 2025-12-14 19:04:56,577 | INFO     | pgrp: 1316847
[2025-12-14 20:06:21] 2025-12-14 19:04:56,577 | INFO     | corecount: 4
[2025-12-14 20:06:21] 2025-12-14 19:04:56,577 | INFO     | event service: False
[2025-12-14 20:06:21] 2025-12-14 19:04:56,577 | INFO     | sizes: {0: 2284000, 7: 2284262, 11: 2284290, 10080: 2313388, 10081: 2313387, 10083: 2322463, 10085: 2322647, 10096: 2322905}
[2025-12-14 20:06:21] 2025-12-14 19:04:56,577 | INFO     | --------------------------------------------------
[2025-12-14 20:06:21] 2025-12-14 19:04:56,577 | INFO     | 
[2025-12-14 20:06:21] 2025-12-14 19:04:56,577 | INFO     | executing command: ls -lF /scratch/boinc/var/slot96/slots/0
[2025-12-14 20:06:21] 2025-12-14 19:04:56,608 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 20:06:21] 2025-12-14 19:04:56,608 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 20:06:21] 2025-12-14 19:04:56,608 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 20:06:21] 2025-12-14 19:04:56,608 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 20:06:21] 2025-12-14 19:04:56,608 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 20:06:21] 2025-12-14 19:04:56,609 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 20:06:21] 2025-12-14 19:04:56,609 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 20:06:21] 2025-12-14 19:04:56,609 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 20:06:21] 2025-12-14 19:04:56,609 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 20:06:21] 2025-12-14 19:04:56,609 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 20:06:21] 2025-12-14 19:04:56,609 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 20:06:21] 2025-12-14 19:04:56,609 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 20:06:21] 2025-12-14 19:04:56,609 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 20:06:21] 2025-12-14 19:04:56,609 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 20:06:21] 2025-12-14 19:04:56,609 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 20:06:21] 2025-12-14 19:04:56,609 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 20:06:21] 2025-12-14 19:04:56,610 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 20:06:21] 2025-12-14 19:04:56,610 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 20:06:21] 2025-12-14 19:04:56,610 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 20:06:21] 2025-12-14 19:04:56,610 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 20:06:21] 2025-12-14 19:04:56,610 | INFO     | job 6929039880 has completed (purged errors)
[2025-12-14 20:06:21] 2025-12-14 19:04:56,610 | INFO     | overall cleanup function is called
[2025-12-14 20:06:21] 2025-12-14 19:04:57,620 | INFO     | --- collectZombieJob: --- 10, [1316847]
[2025-12-14 20:06:21] 2025-12-14 19:04:57,620 | INFO     | zombie collector waiting for pid 1316847
[2025-12-14 20:06:21] 2025-12-14 19:04:57,620 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 20:06:21] 2025-12-14 19:04:57,621 | INFO     | collected zombie processes
[2025-12-14 20:06:21] 2025-12-14 19:04:57,621 | INFO     | will attempt to kill all subprocesses of pid=1316847
[2025-12-14 20:06:21] 2025-12-14 19:04:58,438 | INFO     | process IDs to be killed: [1316847] (in reverse order)
[2025-12-14 20:06:21] 2025-12-14 19:04:58,707 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 20:06:21] 2025-12-14 19:04:58,707 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 20:06:21] 2025-12-14 19:04:58,739 | INFO     | did not find any defunct processes belonging to 1316847
[2025-12-14 20:06:21] 2025-12-14 19:04:58,772 | INFO     | did not find any defunct processes belonging to 1316847
[2025-12-14 20:06:21] 2025-12-14 19:04:58,772 | INFO     | ready for new job
[2025-12-14 20:06:21] 2025-12-14 19:04:58,772 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 20:06:21] 2025-12-14 19:04:58,775 | INFO     | ***************************************
[2025-12-14 20:06:21] 2025-12-14 19:04:58,775 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 20:06:21] 2025-12-14 19:04:58,775 | INFO     | ***************************************
[2025-12-14 20:06:21] 2025-12-14 19:04:58,775 | INFO     | 
[2025-12-14 20:06:21] 2025-12-14 19:04:58,783 | INFO     | architecture information:
[2025-12-14 20:06:21] 2025-12-14 19:04:58,784 | INFO     | executing command: cat /etc/os-release
[2025-12-14 20:06:21] 2025-12-14 19:04:58,808 | INFO     | cat /etc/os-release:
[2025-12-14 20:06:21] NAME="CentOS Linux"
[2025-12-14 20:06:21] VERSION="7 (Core)"
[2025-12-14 20:06:21] ID="centos"
[2025-12-14 20:06:21] ID_LIKE="rhel fedora"
[2025-12-14 20:06:21] VERSION_ID="7"
[2025-12-14 20:06:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 20:06:21] ANSI_COLOR="0;31"
[2025-12-14 20:06:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 20:06:21] HOME_URL="https://www.centos.org/"
[2025-12-14 20:06:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 20:06:21] 
[2025-12-14 20:06:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 20:06:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 20:06:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 20:06:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 20:06:21] 
[2025-12-14 20:06:21] 2025-12-14 19:04:58,809 | INFO     | ***************************************
[2025-12-14 20:06:21] 2025-12-14 19:04:59,311 | INFO     | executing command: df -mP /scratch/boinc/var/slot96/slots/0
[2025-12-14 20:06:21] 2025-12-14 19:04:59,337 | INFO     | sufficient remaining disk space (3319341776896 B)
[2025-12-14 20:06:21] 2025-12-14 19:04:59,338 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 20:06:21] 2025-12-14 19:04:59,338 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 20:06:21] 2025-12-14 19:04:59,338 | INFO     | update_server=False
[2025-12-14 20:06:21] 2025-12-14 19:04:59,338 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 20:06:21] 2025-12-14 19:04:59,339 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 20:06:21] 2025-12-14 19:04:59,832 | INFO     | all job control threads have been joined
[2025-12-14 20:06:21] 2025-12-14 19:04:59,849 | INFO     | all data control threads have been joined
[2025-12-14 20:06:21] 2025-12-14 19:04:59,912 | INFO     | all payload control threads have been joined
[2025-12-14 20:06:21] 2025-12-14 19:05:00,097 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 20:06:21] 2025-12-14 19:05:00,097 | INFO     | aborting loop
[2025-12-14 20:06:21] 2025-12-14 19:05:00,339 | INFO     | [job] retrieve thread has finished
[2025-12-14 20:06:21] 2025-12-14 19:05:00,345 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 20:06:21] 2025-12-14 19:05:00,425 | INFO     | [job] validate thread has finished
[2025-12-14 20:06:21] 2025-12-14 19:05:00,636 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 20:06:21] 2025-12-14 19:05:00,645 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 20:06:21] 2025-12-14 19:05:00,837 | INFO     | [data] copytool_in thread has finished
[2025-12-14 20:06:21] 2025-12-14 19:05:00,838 | INFO     | [job] control thread has finished
[2025-12-14 20:06:21] 2025-12-14 19:05:00,855 | INFO     | [data] control thread has finished
[2025-12-14 20:06:21] 2025-12-14 19:05:00,917 | INFO     | [payload] control thread has finished
[2025-12-14 20:06:21] 2025-12-14 19:05:01,102 | INFO     | [job] job monitor thread has finished
[2025-12-14 20:06:21] 2025-12-14 19:05:01,158 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 20:06:21] 2025-12-14 19:05:01,310 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 20:06:21] 2025-12-14 19:05:01,333 | INFO     | [payload] failed_post thread has finished
[2025-12-14 20:06:21] 2025-12-14 19:05:01,345 | INFO     | [data] copytool_out thread has finished
[2025-12-14 20:06:21] 2025-12-14 19:05:01,586 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 20:06:21] 2025-12-14 19:05:01,638 | INFO     | [payload] validate_post thread has finished
[2025-12-14 20:06:21] 2025-12-14 19:05:02,591 | INFO     | [job] queue monitor thread has finished
[2025-12-14 20:06:21] 2025-12-14 19:05:05,164 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 20:06:21] 2025-12-14 19:05:30,218 | INFO     | PID=1309435 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 20:06:21] 2025-12-14 19:05:30,218 | INFO     | .. there are 11 such processes running
[2025-12-14 20:06:21] 2025-12-14 19:05:30,219 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 20:06:21] 2025-12-14 19:05:30,219 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 20:06:21] 2025-12-14 19:05:30,219 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 20:06:21] 2025-12-14 19:05:38,514 | INFO     | [monitor] cgroup control has ended
[2025-12-14 20:06:21] 2025-12-14 19:05:38,991 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22976363231040)>', '<ExcThread(monitor, started 22975921243904)>']
[2025-12-14 20:06:21] 2025-12-14 19:05:39,261 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 20:06:21] 2025-12-14 19:05:39,261 | INFO     | [monitor] control thread has ended
[2025-12-14 20:06:21] 2025-12-14 19:05:44,016 | INFO     | all workflow threads have been joined
[2025-12-14 20:06:21] 2025-12-14 19:05:44,016 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 20:06:21] 2025-12-14 19:05:44,016 | INFO     | traces error code: 0
[2025-12-14 20:06:21] 2025-12-14 19:05:44,017 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 20:06:21] 2025-12-14 19:05:44,230 [wrapper] ==== pilot stdout END ====
[2025-12-14 20:06:21] 2025-12-14 19:05:44,235 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 20:06:21] 2025-12-14 19:05:44,238 [wrapper] pilotpid: 1309435
[2025-12-14 20:06:21] 2025-12-14 19:05:44,243 [wrapper] Pilot exit status: 0
[2025-12-14 20:06:21] 2025-12-14 19:05:44,265 [wrapper] pandaids: 6929039880
[2025-12-14 20:06:21] 2025-12-14 19:05:44,432 [wrapper] cleanup supervisor_pilot 1754353 1309436
[2025-12-14 20:06:21] 2025-12-14 19:05:44,436 [wrapper] Test setup, not cleaning
[2025-12-14 20:06:21] 2025-12-14 19:05:44,440 [wrapper] apfmon messages muted
[2025-12-14 20:06:21] 2025-12-14 19:05:44,443 [wrapper] ==== wrapper stdout END ====
[2025-12-14 20:06:21] 2025-12-14 19:05:44,446 [wrapper] ==== wrapper stderr END ====
[2025-12-14 20:06:21]  *** Error codes and diagnostics ***
[2025-12-14 20:06:21]     "exeErrorCode": 0,
[2025-12-14 20:06:21]     "exeErrorDiag": "",
[2025-12-14 20:06:21]     "pilotErrorCode": 0,
[2025-12-14 20:06:21]     "pilotErrorDiag": "",
[2025-12-14 20:06:21]  *** Listing of results directory ***
[2025-12-14 20:06:21] total 332780
[2025-12-14 20:06:21] -rw-r--r-- 1 boinc boinc    579449 Dec 13 07:26 pilot3.tar.gz
[2025-12-14 20:06:21] -rw-r--r-- 1 boinc boinc      5112 Dec 13 07:49 queuedata.json
[2025-12-14 20:06:21] -rwx------ 1 boinc boinc     36322 Dec 13 07:49 runpilot2-wrapper.sh
[2025-12-14 20:06:21] -rw-r--r-- 1 boinc boinc       100 Dec 14 17:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 20:06:21] -rwxr-xr-x 1 boinc boinc      7986 Dec 14 17:16 run_atlas
[2025-12-14 20:06:21] -rw-r--r-- 1 boinc boinc       105 Dec 14 17:16 job.xml
[2025-12-14 20:06:21] -rw-r--r-- 1 boinc boinc      6690 Dec 14 17:16 init_data.xml
[2025-12-14 20:06:21] -rw-r--r-- 2 boinc boinc 189511899 Dec 14 17:16 EVNT.47886829._000115.pool.root.1
[2025-12-14 20:06:21] -rw-r--r-- 2 boinc boinc     15847 Dec 14 17:16 start_atlas.sh
[2025-12-14 20:06:21] drwxrwx--x 2 boinc boinc      4096 Dec 14 17:16 shared
[2025-12-14 20:06:21] -rw-r--r-- 2 boinc boinc    592411 Dec 14 17:16 input.tar.gz
[2025-12-14 20:06:21] -rw-r--r-- 1 boinc boinc         0 Dec 14 17:16 boinc_lockfile
[2025-12-14 20:06:21] -rw-r--r-- 1 boinc boinc      2537 Dec 14 17:16 pandaJob.out
[2025-12-14 20:06:21] -rw------- 1 boinc boinc    991024 Dec 14 17:16 agis_schedconf.cvmfs.json
[2025-12-14 20:06:21] -rw------- 1 boinc boinc   1516240 Dec 14 17:16 agis_ddmendpoints.agis.ALL.json
[2025-12-14 20:06:21] drwx------ 5 boinc boinc      4096 Dec 14 17:16 pilot3
[2025-12-14 20:06:21] -rw------- 1 boinc boinc 143817533 Dec 14 20:04 HITS.47886831._002874.pool.root.1
[2025-12-14 20:06:21] -rw------- 1 boinc boinc      1035 Dec 14 20:04 memory_monitor_summary.json
[2025-12-14 20:06:21] -rw-r--r-- 1 boinc boinc       529 Dec 14 20:04 boinc_task_state.xml
[2025-12-14 20:06:21] -rw------- 1 boinc boinc    351818 Dec 14 20:04 log.47886831._002874.job.log.tgz.1
[2025-12-14 20:06:21] -rw------- 1 boinc boinc      7799 Dec 14 20:04 heartbeat.json
[2025-12-14 20:06:21] -rw------- 1 boinc boinc        95 Dec 14 20:04 pilot_heartbeat.json
[2025-12-14 20:06:21] -rw------- 1 boinc boinc      4835 Dec 14 20:05 pilotlog.txt
[2025-12-14 20:06:21] -rw------- 1 boinc boinc   1409748 Dec 14 20:05 log.47886831._002874.job.log.1
[2025-12-14 20:06:21] -rw------- 1 boinc boinc       357 Dec 14 20:05 output.list
[2025-12-14 20:06:21] -rw-r--r-- 1 boinc boinc       620 Dec 14 20:05 runtime_log
[2025-12-14 20:06:21] -rw------- 1 boinc boinc   1781760 Dec 14 20:05 result.tar.gz
[2025-12-14 20:06:21] -rw-r--r-- 1 boinc boinc      9206 Dec 14 20:05 runtime_log.err
[2025-12-14 20:06:21] -rw------- 1 boinc boinc       666 Dec 14 20:05 0YILDmzcYo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmq2RKDm3vXDan.diag
[2025-12-14 20:06:21] -rw-r--r-- 1 boinc boinc        26 Dec 14 20:06 wrapper_checkpoint.txt
[2025-12-14 20:06:21] -rw-r--r-- 1 boinc boinc      8192 Dec 14 20:06 boinc_mmap_file
[2025-12-14 20:06:21] -rw-r--r-- 1 boinc boinc     21093 Dec 14 20:06 stderr.txt
[2025-12-14 20:06:21] HITS file was successfully produced:
[2025-12-14 20:06:21] -rw------- 1 boinc boinc 143817533 Dec 14 20:04 shared/HITS.pool.root.1
[2025-12-14 20:06:21]  *** Contents of shared directory: ***
[2025-12-14 20:06:21] total 327864
[2025-12-14 20:06:21] -rw-r--r-- 2 boinc boinc 189511899 Dec 14 17:16 ATLAS.root_0
[2025-12-14 20:06:21] -rw-r--r-- 2 boinc boinc     15847 Dec 14 17:16 start_atlas.sh
[2025-12-14 20:06:21] -rw-r--r-- 2 boinc boinc    592411 Dec 14 17:16 input.tar.gz
[2025-12-14 20:06:21] -rw------- 1 boinc boinc 143817533 Dec 14 20:04 HITS.pool.root.1
[2025-12-14 20:06:21] -rw------- 1 boinc boinc   1781760 Dec 14 20:05 result.tar.gz
20:06:22 (1305456): run_atlas exited; CPU time 39445.930235
20:06:22 (1305456): called boinc_finish(0)

</stderr_txt>
]]>

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