Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:58:16 (30849): wrapper (7.7.26015): starting
01:58:16 (30849): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 01:58:16] Arguments: --nthreads 12
[2025-12-13 01:58:16] Threads: 12
[2025-12-13 01:58:16] Checking for CVMFS
[2025-12-13 01:58:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 01:58:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 01:58:17] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 01:58:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 01:58:17] 2.11.2.0 2945 311832 94308 153951 0 57 13140904 20275200 1 130560 2 136921891 99.963 18411073 15421 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 01:58:17] CVMFS is ok
[2025-12-13 01:58:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 01:58:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 01:58:17] Further information can be found at the LHC@home message board.
[2025-12-13 01:58:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 01:58:17] Checking for apptainer binary...
[2025-12-13 01:58:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 01:58:17] Running /usr/bin/apptainer --version
[2025-12-13 01:58:17] apptainer version 1.3.2-1.el7
[2025-12-13 01:58:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 01:58:18] c-205-2.aglt2.org
[2025-12-13 01:58:18] apptainer works
[2025-12-13 01:58:18] Set ATHENA_PROC_NUMBER=12
[2025-12-13 01:58:18] Set ATHENA_CORE_NUMBER=12
[2025-12-13 01:58:18] Starting ATLAS job with PandaID=6929038267
[2025-12-13 01:58:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 03:15:46]  *** The last 200 lines of the pilot log: ***
[2025-12-13 03:15:46]  protocol_id=None
[2025-12-13 03:15:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-13 03:15:46]  replicas=None
[2025-12-13 03:15:46]  scope=mc23_13p6TeV
[2025-12-13 03:15:46]  status=None
[2025-12-13 03:15:46]  status_code=0
[2025-12-13 03:15:46]  storage_token=
[2025-12-13 03:15:46]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929038267/log.47886933._001016.job.log.tgz.1
[2025-12-13 03:15:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4b/7e/log.47886933._001016.job.log.tgz.1
[2025-12-13 03:15:46]  workdir=None
[2025-12-13 03:15:46] ]
[2025-12-13 03:15:46] 2025-12-13 08:14:47,946 | INFO     | transferring file log.47886933._001016.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929038267/log.47886933._001016.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-13 03:15:46] 2025-12-13 08:14:47,946 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929038267/log.47886933._001016.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886933._001016.job
[2025-12-13 03:15:46] 2025-12-13 08:14:47,969 | INFO     | adding to output.list: log.47886933._001016.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4b/7e/log.47886933._001016.job.log.tg
[2025-12-13 03:15:46] 2025-12-13 08:14:47,970 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-13 03:15:46] 2025-12-13 08:14:47,970 | INFO     | summary of transferred files:
[2025-12-13 03:15:46] 2025-12-13 08:14:47,970 | INFO     |  -- lfn=log.47886933._001016.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 03:15:46] 2025-12-13 08:14:47,971 | INFO     | stage-out finished correctly
[2025-12-13 03:15:46] 2025-12-13 08:14:48,537 | INFO     | time since job start (4575s) is within the limit (174528.0s)
[2025-12-13 03:15:46] 2025-12-13 08:14:49,140 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 03:15:46] 2025-12-13 08:14:49,221 | INFO     | job 6929038267 has state=finished
[2025-12-13 03:15:46] 2025-12-13 08:14:49,222 | INFO     | preparing for final server update for job 6929038267 in state='finished'
[2025-12-13 03:15:46] 2025-12-13 08:14:49,222 | INFO     | this job has now completed (state=finished)
[2025-12-13 03:15:46] 2025-12-13 08:14:49,223 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 03:15:46] 2025-12-13 08:14:49,223 | INFO     | log transfer has been attempted: DONE
[2025-12-13 03:15:46] 2025-12-13 08:14:49,223 | INFO     | job 6929038267 has finished - writing final server update
[2025-12-13 03:15:46] 2025-12-13 08:14:49,223 | INFO     | total number of processed events: 400 (read)
[2025-12-13 03:15:46] 2025-12-13 08:14:49,224 | INFO     | executing command: lscpu
[2025-12-13 03:15:46] 2025-12-13 08:14:49,251 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 03:15:46] 2025-12-13 08:14:50,542 | INFO     | time since job start (4577s) is within the limit (174528.0s)
[2025-12-13 03:15:46] 2025-12-13 08:14:51,167 | WARNING  | process 8641 can no longer be monitored (due to stat problems) - aborting
[2025-12-13 03:15:46] 2025-12-13 08:14:51,167 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929038267/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 03:15:46] 2025-12-13 08:14:51,257 | INFO     | number of running child processes to parent process 8641: 1
[2025-12-13 03:15:46] 2025-12-13 08:14:51,257 | INFO     | maximum number of monitored processes: 6
[2025-12-13 03:15:46] 2025-12-13 08:14:52,547 | INFO     | time since job start (4579s) is within the limit (174528.0s)
[2025-12-13 03:15:46] 2025-12-13 08:14:53,760 | INFO     | monitor loop #340: job 0:6929038267 is in state 'finished'
[2025-12-13 03:15:46] 2025-12-13 08:14:53,760 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 03:15:46] 2025-12-13 08:14:54,553 | INFO     | time since job start (4581s) is within the limit (174528.0s)
[2025-12-13 03:15:46] 2025-12-13 08:14:55,095 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 03:15:46] 2025-12-13 08:14:55,099 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-12-13 03:15:46] 2025-12-13 08:14:55,101 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929038267/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 03:15:46] 2025-12-13 08:14:55,101 | INFO     | extracted standard info from prmon json
[2025-12-13 03:15:46] 2025-12-13 08:14:55,101 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 03:15:46] 2025-12-13 08:14:55,101 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 03:15:46] 2025-12-13 08:14:55,102 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 03:15:46] 2025-12-13 08:14:55,102 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 03:15:46] 2025-12-13 08:14:55,103 | INFO     | fitting pss+swap vs Time
[2025-12-13 03:15:46] 2025-12-13 08:14:55,104 | INFO     | sum of square deviations: 97479037.0
[2025-12-13 03:15:46] 2025-12-13 08:14:55,104 | INFO     | sum of deviations: -512827671.00000006
[2025-12-13 03:15:46] 2025-12-13 08:14:55,104 | INFO     | mean x: 1765611490.5
[2025-12-13 03:15:46] 2025-12-13 08:14:55,104 | INFO     | mean y: 2658824.029411765
[2025-12-13 03:15:46] 2025-12-13 08:14:55,104 | INFO     | intersect: 9291368031.97895
[2025-12-13 03:15:46] 2025-12-13 08:14:55,104 | INFO     | chi2: 0.018682000555305223
[2025-12-13 03:15:46] 2025-12-13 08:14:55,105 | INFO     | current memory leak: -5.26 B/s (using 68 data points, chi2=0.02)
[2025-12-13 03:15:46] 2025-12-13 08:14:55,105 | INFO     | could have reported an average CPU frequency of 2063 MHz (6 samples)
[2025-12-13 03:15:46] 2025-12-13 08:14:55,105 | INFO     | ..............................
[2025-12-13 03:15:46] 2025-12-13 08:14:55,105 | INFO     | . Timing measurements:
[2025-12-13 03:15:46] 2025-12-13 08:14:55,105 | INFO     | . get job = 0 s
[2025-12-13 03:15:46] 2025-12-13 08:14:55,105 | INFO     | . initial setup = 2 s
[2025-12-13 03:15:46] 2025-12-13 08:14:55,105 | INFO     | . payload setup = 7 s
[2025-12-13 03:15:46] 2025-12-13 08:14:55,106 | INFO     | . stage-in = 0 s
[2025-12-13 03:15:46] 2025-12-13 08:14:55,106 | INFO     | . payload execution = 4546 s
[2025-12-13 03:15:46] 2025-12-13 08:14:55,106 | INFO     | . stage-out = 0 s
[2025-12-13 03:15:46] 2025-12-13 08:14:55,106 | INFO     | . log creation = 0 s
[2025-12-13 03:15:46] 2025-12-13 08:14:55,106 | INFO     | ..............................
[2025-12-13 03:15:46] 2025-12-13 08:14:55,649 | INFO     | 
[2025-12-13 03:15:46] 2025-12-13 08:14:55,650 | INFO     | job summary report
[2025-12-13 03:15:46] 2025-12-13 08:14:55,650 | INFO     | --------------------------------------------------
[2025-12-13 03:15:46] 2025-12-13 08:14:55,650 | INFO     | PanDA job id: 6929038267
[2025-12-13 03:15:46] 2025-12-13 08:14:55,650 | INFO     | task id: 47886933
[2025-12-13 03:15:46] 2025-12-13 08:14:55,650 | INFO     | errors: (none)
[2025-12-13 03:15:46] 2025-12-13 08:14:55,650 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 03:15:46] 2025-12-13 08:14:55,650 | INFO     | pilot state: finished 
[2025-12-13 03:15:46] 2025-12-13 08:14:55,651 | INFO     | transexitcode: 0
[2025-12-13 03:15:46] 2025-12-13 08:14:55,651 | INFO     | exeerrorcode: 0
[2025-12-13 03:15:46] 2025-12-13 08:14:55,651 | INFO     | exeerrordiag: 
[2025-12-13 03:15:46] 2025-12-13 08:14:55,651 | INFO     | exitcode: 0
[2025-12-13 03:15:46] 2025-12-13 08:14:55,651 | INFO     | exitmsg: OK
[2025-12-13 03:15:46] 2025-12-13 08:14:55,651 | INFO     | cpuconsumptiontime: 49448 s
[2025-12-13 03:15:46] 2025-12-13 08:14:55,652 | INFO     | nevents: 400
[2025-12-13 03:15:46] 2025-12-13 08:14:55,652 | INFO     | neventsw: 0
[2025-12-13 03:15:46] 2025-12-13 08:14:55,652 | INFO     | pid: 8641
[2025-12-13 03:15:46] 2025-12-13 08:14:55,652 | INFO     | pgrp: 8641
[2025-12-13 03:15:46] 2025-12-13 08:14:55,652 | INFO     | corecount: 12
[2025-12-13 03:15:46] 2025-12-13 08:14:55,652 | INFO     | event service: False
[2025-12-13 03:15:46] 2025-12-13 08:14:55,653 | INFO     | sizes: {0: 2283792, 1: 2283991, 6: 2284253, 11: 2284281, 4557: 2310373, 4558: 2319371, 4559: 2319555, 4565: 2319749}
[2025-12-13 03:15:46] 2025-12-13 08:14:55,653 | INFO     | --------------------------------------------------
[2025-12-13 03:15:46] 2025-12-13 08:14:55,653 | INFO     | 
[2025-12-13 03:15:46] 2025-12-13 08:14:55,653 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 03:15:46] 2025-12-13 08:14:55,678 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 03:15:46] 2025-12-13 08:14:55,679 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 03:15:46] 2025-12-13 08:14:55,679 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 03:15:46] 2025-12-13 08:14:55,679 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 03:15:46] 2025-12-13 08:14:55,679 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 03:15:46] 2025-12-13 08:14:55,679 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 03:15:46] 2025-12-13 08:14:55,680 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 03:15:46] 2025-12-13 08:14:55,680 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 03:15:46] 2025-12-13 08:14:55,680 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 03:15:46] 2025-12-13 08:14:55,680 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 03:15:46] 2025-12-13 08:14:55,680 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 03:15:46] 2025-12-13 08:14:55,680 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 03:15:46] 2025-12-13 08:14:55,681 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 03:15:46] 2025-12-13 08:14:55,681 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 03:15:46] 2025-12-13 08:14:55,681 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 03:15:46] 2025-12-13 08:14:55,681 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 03:15:46] 2025-12-13 08:14:55,681 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 03:15:46] 2025-12-13 08:14:55,681 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 03:15:46] 2025-12-13 08:14:55,682 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 03:15:46] 2025-12-13 08:14:55,682 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 03:15:46] 2025-12-13 08:14:55,682 | INFO     | job 6929038267 has completed (purged errors)
[2025-12-13 03:15:46] 2025-12-13 08:14:55,682 | INFO     | overall cleanup function is called
[2025-12-13 03:15:46] 2025-12-13 08:14:56,691 | INFO     | --- collectZombieJob: --- 10, [8641]
[2025-12-13 03:15:46] 2025-12-13 08:14:56,691 | INFO     | zombie collector waiting for pid 8641
[2025-12-13 03:15:46] 2025-12-13 08:14:56,691 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 03:15:46] 2025-12-13 08:14:56,691 | INFO     | collected zombie processes
[2025-12-13 03:15:46] 2025-12-13 08:14:56,691 | INFO     | will attempt to kill all subprocesses of pid=8641
[2025-12-13 03:15:46] 2025-12-13 08:14:56,783 | INFO     | process IDs to be killed: [8641] (in reverse order)
[2025-12-13 03:15:46] 2025-12-13 08:14:56,837 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 03:15:46] 2025-12-13 08:14:56,837 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 03:15:46] 2025-12-13 08:14:56,840 | INFO     | did not find any defunct processes belonging to 8641
[2025-12-13 03:15:46] 2025-12-13 08:14:56,843 | INFO     | did not find any defunct processes belonging to 8641
[2025-12-13 03:15:46] 2025-12-13 08:14:56,843 | INFO     | ready for new job
[2025-12-13 03:15:46] 2025-12-13 08:14:56,843 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 03:15:46] 2025-12-13 08:14:56,844 | INFO     | ***************************************
[2025-12-13 03:15:46] 2025-12-13 08:14:56,844 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 03:15:46] 2025-12-13 08:14:56,844 | INFO     | ***************************************
[2025-12-13 03:15:46] 2025-12-13 08:14:56,844 | INFO     | 
[2025-12-13 03:15:46] 2025-12-13 08:14:56,845 | INFO     | architecture information:
[2025-12-13 03:15:46] 2025-12-13 08:14:56,846 | INFO     | executing command: cat /etc/os-release
[2025-12-13 03:15:46] 2025-12-13 08:14:56,862 | INFO     | cat /etc/os-release:
[2025-12-13 03:15:46] NAME="CentOS Linux"
[2025-12-13 03:15:46] VERSION="7 (Core)"
[2025-12-13 03:15:46] ID="centos"
[2025-12-13 03:15:46] ID_LIKE="rhel fedora"
[2025-12-13 03:15:46] VERSION_ID="7"
[2025-12-13 03:15:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 03:15:46] ANSI_COLOR="0;31"
[2025-12-13 03:15:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 03:15:46] HOME_URL="https://www.centos.org/"
[2025-12-13 03:15:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 03:15:46] 
[2025-12-13 03:15:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 03:15:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 03:15:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 03:15:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 03:15:46] 
[2025-12-13 03:15:46] 2025-12-13 08:14:56,862 | INFO     | ***************************************
[2025-12-13 03:15:46] 2025-12-13 08:14:57,365 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 03:15:46] 2025-12-13 08:14:57,383 | INFO     | sufficient remaining disk space (29521608704 B)
[2025-12-13 03:15:46] 2025-12-13 08:14:57,383 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 03:15:46] 2025-12-13 08:14:57,383 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 03:15:46] 2025-12-13 08:14:57,384 | INFO     | update_server=False
[2025-12-13 03:15:46] 2025-12-13 08:14:57,384 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 03:15:46] 2025-12-13 08:14:57,384 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 03:15:46] 2025-12-13 08:14:57,384 | INFO     | aborting loop
[2025-12-13 03:15:46] 2025-12-13 08:14:57,971 | INFO     | all data control threads have been joined
[2025-12-13 03:15:46] 2025-12-13 08:14:58,046 | INFO     | all payload control threads have been joined
[2025-12-13 03:15:46] 2025-12-13 08:14:58,386 | INFO     | [job] retrieve thread has finished
[2025-12-13 03:15:46] 2025-12-13 08:14:58,390 | INFO     | [job] job monitor thread has finished
[2025-12-13 03:15:46] 2025-12-13 08:14:58,553 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 03:15:46] 2025-12-13 08:14:58,566 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 03:15:46] 2025-12-13 08:14:58,608 | INFO     | [payload] failed_post thread has finished
[2025-12-13 03:15:46] 2025-12-13 08:14:58,852 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 03:15:46] 2025-12-13 08:14:58,977 | INFO     | [data] control thread has finished
[2025-12-13 03:15:46] 2025-12-13 08:14:59,004 | INFO     | all job control threads have been joined
[2025-12-13 03:15:46] 2025-12-13 08:14:59,051 | INFO     | [payload] control thread has finished
[2025-12-13 03:15:46] 2025-12-13 08:14:59,152 | INFO     | [data] copytool_in thread has finished
[2025-12-13 03:15:46] 2025-12-13 08:14:59,191 | INFO     | [payload] validate_post thread has finished
[2025-12-13 03:15:46] 2025-12-13 08:14:59,731 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 03:15:46] 2025-12-13 08:14:59,740 | INFO     | [job] validate thread has finished
[2025-12-13 03:15:46] 2025-12-13 08:14:59,756 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 03:15:46] 2025-12-13 08:15:00,009 | INFO     | [job] control thread has finished
[2025-12-13 03:15:46] 2025-12-13 08:15:00,196 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 03:15:46] 2025-12-13 08:15:00,567 | INFO     | [data] copytool_out thread has finished
[2025-12-13 03:15:46] 2025-12-13 08:15:01,202 | INFO     | [job] queue monitor thread has finished
[2025-12-13 03:15:46] 2025-12-13 08:15:03,737 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 03:15:46] 2025-12-13 08:15:07,708 | INFO     | job.realtimelogging is not enabled
[2025-12-13 03:15:46] 2025-12-13 08:15:08,713 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 03:15:46] 2025-12-13 08:15:27,759 | INFO     | PID=2209 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-13 03:15:46] 2025-12-13 08:15:27,760 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 03:15:46] 2025-12-13 08:15:27,760 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 03:15:46] 2025-12-13 08:15:27,760 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 03:15:46] 2025-12-13 08:15:40,623 | INFO     | [monitor] cgroup control has ended
[2025-12-13 03:15:46] 2025-12-13 08:15:40,852 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139753428465472)>', '<ExcThread(monitor, started 139752246335232)>']
[2025-12-13 03:15:46] 2025-12-13 08:15:41,819 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 03:15:46] 2025-12-13 08:15:41,819 | INFO     | [monitor] control thread has ended
[2025-12-13 03:15:46] 2025-12-13 08:15:45,860 | INFO     | all workflow threads have been joined
[2025-12-13 03:15:46] 2025-12-13 08:15:45,860 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 03:15:46] 2025-12-13 08:15:45,869 | INFO     | traces error code: 0
[2025-12-13 03:15:46] 2025-12-13 08:15:45,870 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 03:15:46] 2025-12-13 08:15:45,961 [wrapper] ==== pilot stdout END ====
[2025-12-13 03:15:46] 2025-12-13 08:15:45,964 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 03:15:46] 2025-12-13 08:15:45,968 [wrapper] pilotpid: 2209
[2025-12-13 03:15:46] 2025-12-13 08:15:45,972 [wrapper] Pilot exit status: 0
[2025-12-13 03:15:46] 2025-12-13 08:15:45,988 [wrapper] pandaids: 6929038267
[2025-12-13 03:15:46] 2025-12-13 08:15:46,034 [wrapper] cleanup supervisor_pilot  4453 2210
[2025-12-13 03:15:46] 2025-12-13 08:15:46,038 [wrapper] Test setup, not cleaning
[2025-12-13 03:15:46] 2025-12-13 08:15:46,042 [wrapper] apfmon messages muted
[2025-12-13 03:15:46] 2025-12-13 08:15:46,047 [wrapper] ==== wrapper stdout END ====
[2025-12-13 03:15:46] 2025-12-13 08:15:46,051 [wrapper] ==== wrapper stderr END ====
[2025-12-13 03:15:46]  *** Error codes and diagnostics ***
[2025-12-13 03:15:46]     "exeErrorCode": 0,
[2025-12-13 03:15:46]     "exeErrorDiag": "",
[2025-12-13 03:15:46]     "pilotErrorCode": 0,
[2025-12-13 03:15:46]     "pilotErrorDiag": "",
[2025-12-13 03:15:46]  *** Listing of results directory ***
[2025-12-13 03:15:46] total 336956
[2025-12-13 03:15:46] -rw-r--r-- 1 boincer umatlas    597923 Dec  8 02:17 pilot3.tar.gz
[2025-12-13 03:15:46] -rwx------ 1 boincer umatlas     36322 Dec 13 01:48 runpilot2-wrapper.sh
[2025-12-13 03:15:46] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 01:49 queuedata.json
[2025-12-13 03:15:46] -rw-r--r-- 1 boincer umatlas       100 Dec 13 01:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 03:15:46] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 01:58 run_atlas
[2025-12-13 03:15:46] -rw-r--r-- 1 boincer umatlas       105 Dec 13 01:58 job.xml
[2025-12-13 03:15:46] -rw-r--r-- 2 boincer umatlas 193735885 Dec 13 01:58 EVNT.47886929._000041.pool.root.1
[2025-12-13 03:15:46] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 01:58 start_atlas.sh
[2025-12-13 03:15:46] drwxrwx--x 2 boincer umatlas      4096 Dec 13 01:58 shared
[2025-12-13 03:15:46] -rw-r--r-- 2 boincer umatlas    610530 Dec 13 01:58 input.tar.gz
[2025-12-13 03:15:46] -rw-r--r-- 1 boincer umatlas         0 Dec 13 01:58 boinc_lockfile
[2025-12-13 03:15:46] -rw-r--r-- 1 boincer umatlas      2512 Dec 13 01:58 pandaJob.out
[2025-12-13 03:15:46] -rw------- 1 boincer umatlas        57 Dec 13 01:58 setup.sh.local
[2025-12-13 03:15:46] -rw------- 1 boincer umatlas    991736 Dec 13 01:58 agis_schedconf.cvmfs.json
[2025-12-13 03:15:46] -rw------- 1 boincer umatlas   1516240 Dec 13 01:58 agis_ddmendpoints.agis.ALL.json
[2025-12-13 03:15:46] drwx------ 7 boincer umatlas      4096 Dec 13 01:58 pilot3
[2025-12-13 03:15:46] -rw-r--r-- 1 boincer umatlas      5951 Dec 13 03:11 init_data.xml
[2025-12-13 03:15:46] -rw------- 1 boincer umatlas 145243764 Dec 13 03:14 HITS.47886933._001016.pool.root.1
[2025-12-13 03:15:46] -rw------- 1 boincer umatlas        95 Dec 13 03:14 pilot_heartbeat.json
[2025-12-13 03:15:46] -rw-r--r-- 1 boincer umatlas       529 Dec 13 03:14 boinc_task_state.xml
[2025-12-13 03:15:46] -rw------- 1 boincer umatlas      1045 Dec 13 03:14 memory_monitor_summary.json
[2025-12-13 03:15:46] -rw------- 1 boincer umatlas    388000 Dec 13 03:14 log.47886933._001016.job.log.tgz.1
[2025-12-13 03:15:46] -rw------- 1 boincer umatlas      7839 Dec 13 03:14 heartbeat.json
[2025-12-13 03:15:46] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 03:15 boinc_mmap_file
[2025-12-13 03:15:46] -rw-r--r-- 1 boincer umatlas        27 Dec 13 03:15 wrapper_checkpoint.txt
[2025-12-13 03:15:46] -rw------- 1 boincer umatlas      4817 Dec 13 03:15 pilotlog.txt
[2025-12-13 03:15:46] -rw------- 1 boincer umatlas    664838 Dec 13 03:15 log.47886933._001016.job.log.1
[2025-12-13 03:15:46] -rw------- 1 boincer umatlas       357 Dec 13 03:15 output.list
[2025-12-13 03:15:46] -rw-r--r-- 1 boincer umatlas       620 Dec 13 03:15 runtime_log
[2025-12-13 03:15:46] -rw------- 1 boincer umatlas   1075200 Dec 13 03:15 result.tar.gz
[2025-12-13 03:15:46] -rw-r--r-- 1 boincer umatlas      9339 Dec 13 03:15 runtime_log.err
[2025-12-13 03:15:46] -rw------- 1 boincer umatlas       658 Dec 13 03:15 EgUNDm6bYo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw0RKDmUB7yCn.diag
[2025-12-13 03:15:46] -rw-r--r-- 1 boincer umatlas     21828 Dec 13 03:15 stderr.txt
[2025-12-13 03:15:46] HITS file was successfully produced:
[2025-12-13 03:15:46] -rw------- 1 boincer umatlas 145243764 Dec 13 03:14 shared/HITS.pool.root.1
[2025-12-13 03:15:46]  *** Contents of shared directory: ***
[2025-12-13 03:15:46] total 332708
[2025-12-13 03:15:46] -rw-r--r-- 2 boincer umatlas 193735885 Dec 13 01:58 ATLAS.root_0
[2025-12-13 03:15:46] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 01:58 start_atlas.sh
[2025-12-13 03:15:46] -rw-r--r-- 2 boincer umatlas    610530 Dec 13 01:58 input.tar.gz
[2025-12-13 03:15:46] -rw------- 1 boincer umatlas 145243764 Dec 13 03:14 HITS.pool.root.1
[2025-12-13 03:15:46] -rw------- 1 boincer umatlas   1075200 Dec 13 03:15 result.tar.gz
03:15:47 (30849): run_atlas exited; CPU time 49423.319751
03:15:47 (30849): called boinc_finish(0)

</stderr_txt>
]]>

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