Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:39:57 (15517): wrapper (7.7.26015): starting
12:39:57 (15517): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 12:39:57] Arguments: --nthreads 8
[2025-12-13 12:39:57] Threads: 8
[2025-12-13 12:39:57] Checking for CVMFS
[2025-12-13 12:39:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 12:39:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 12:39:58] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 12:40:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 12:40:00] 2.11.2.0 8605 109805 126528 153959 2 128 14776526 25165825 4504 130560 38 34067688 99.794 26290059 1913 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-13 12:40:00] CVMFS is ok
[2025-12-13 12:40:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 12:40:00] Checking for apptainer binary...
[2025-12-13 12:40:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 12:40:00] Running /usr/bin/apptainer --version
[2025-12-13 12:40:00] apptainer version 1.3.2-1.el7
[2025-12-13 12:40:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 12:40:11] cg-vwn213.simple-grid.lan
[2025-12-13 12:40:11] apptainer works
[2025-12-13 12:40:11] Set ATHENA_PROC_NUMBER=8
[2025-12-13 12:40:11] Set ATHENA_CORE_NUMBER=8
[2025-12-13 12:40:11] Starting ATLAS job with PandaID=6929041574
[2025-12-13 12:40:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 17:24:41]  *** The last 200 lines of the pilot log: ***
[2025-12-13 17:24:41] 2025-12-13 16:23:55,390 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-13 17:24:41] 2025-12-13 16:23:55,391 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-13 17:24:41] 2025-12-13 16:23:55,393 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6929041574/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 17:24:41] 2025-12-13 16:23:55,394 | INFO     | extracted standard info from prmon json
[2025-12-13 17:24:41] 2025-12-13 16:23:55,394 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 17:24:41] 2025-12-13 16:23:55,394 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 17:24:41] 2025-12-13 16:23:55,394 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 17:24:41] 2025-12-13 16:23:55,395 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 17:24:41] 2025-12-13 16:23:55,401 | INFO     | fitting pss+swap vs Time
[2025-12-13 17:24:41] 2025-12-13 16:23:55,401 | INFO     | sum of square deviations: 5902093918.0
[2025-12-13 17:24:41] 2025-12-13 16:23:55,420 | INFO     | sum of deviations: 95625488316.0
[2025-12-13 17:24:41] 2025-12-13 16:23:55,421 | INFO     | mean x: 1765634819.0
[2025-12-13 17:24:41] 2025-12-13 16:23:55,421 | INFO     | mean y: 2417110.7715355805
[2025-12-13 17:24:41] 2025-12-13 16:23:55,421 | INFO     | intersect: -28604327224.435646
[2025-12-13 17:24:41] 2025-12-13 16:23:55,421 | INFO     | chi2: 5.153585463339562
[2025-12-13 17:24:41] 2025-12-13 16:23:55,422 | INFO     | sum of square deviations: 5576683165.5
[2025-12-13 17:24:41] 2025-12-13 16:23:55,425 | INFO     | sum of deviations: 110904294986.5
[2025-12-13 17:24:41] 2025-12-13 16:23:55,425 | INFO     | mean x: 1765634666.5
[2025-12-13 17:24:41] 2025-12-13 16:23:55,425 | INFO     | mean y: 2424146.400763359
[2025-12-13 17:24:41] 2025-12-13 16:23:55,425 | INFO     | intersect: -35111004764.76992
[2025-12-13 17:24:41] 2025-12-13 16:23:55,426 | INFO     | chi2: 4.407962797565323
[2025-12-13 17:24:41] 2025-12-13 16:23:55,426 | INFO     | current chi2=4.407962797565323 (change=14.468037273821984 %)
[2025-12-13 17:24:41] 2025-12-13 16:23:55,426 | INFO     | right removable region: 261
[2025-12-13 17:24:41] 2025-12-13 16:23:55,426 | INFO     | sum of square deviations: 5576683165.5
[2025-12-13 17:24:41] 2025-12-13 16:23:55,429 | INFO     | sum of deviations: 10941879361.500004
[2025-12-13 17:24:41] 2025-12-13 16:23:55,429 | INFO     | mean x: 1765634971.5
[2025-12-13 17:24:41] 2025-12-13 16:23:55,429 | INFO     | mean y: 2456741.5305343512
[2025-12-13 17:24:41] 2025-12-13 16:23:55,429 | INFO     | intersect: -3461854262.2068176
[2025-12-13 17:24:41] 2025-12-13 16:23:55,430 | INFO     | chi2: 1.1796053690939514
[2025-12-13 17:24:41] 2025-12-13 16:23:55,430 | INFO     | current chi2=1.1796053690939514 (change=77.11097686290123 %)
[2025-12-13 17:24:41] 2025-12-13 16:23:55,431 | INFO     | sum of square deviations: 5263458688.0
[2025-12-13 17:24:41] 2025-12-13 16:23:55,433 | INFO     | sum of deviations: -7932780624.0
[2025-12-13 17:24:41] 2025-12-13 16:23:55,433 | INFO     | mean x: 1765635124.0
[2025-12-13 17:24:41] 2025-12-13 16:23:55,433 | INFO     | mean y: 2465844.2645914396
[2025-12-13 17:24:41] 2025-12-13 16:23:55,434 | INFO     | intersect: 2663529021.725031
[2025-12-13 17:24:41] 2025-12-13 16:23:55,434 | INFO     | chi2: 0.8214977519819842
[2025-12-13 17:24:41] 2025-12-13 16:23:55,434 | INFO     | current chi2=0.8214977519819842 (change=30.358255946819558 %)
[2025-12-13 17:24:41] 2025-12-13 16:23:55,435 | INFO     | sum of square deviations: 4962187923.0
[2025-12-13 17:24:41] 2025-12-13 16:23:55,437 | INFO     | sum of deviations: -3390777506.499998
[2025-12-13 17:24:41] 2025-12-13 16:23:55,437 | INFO     | mean x: 1765635276.5
[2025-12-13 17:24:41] 2025-12-13 16:23:55,437 | INFO     | mean y: 2463519.654761905
[2025-12-13 17:24:41] 2025-12-13 16:23:55,438 | INFO     | intersect: 1208962844.778992
[2025-12-13 17:24:41] 2025-12-13 16:23:55,438 | INFO     | chi2: 0.7951699497645814
[2025-12-13 17:24:41] 2025-12-13 16:23:55,438 | INFO     | current chi2=0.7951699497645814 (change=3.2048538360431325 %)
[2025-12-13 17:24:41] 2025-12-13 16:23:55,438 | INFO     | left removable region: 30
[2025-12-13 17:24:41] 2025-12-13 16:23:55,439 | INFO     | sum of square deviations: 3822136780.0
[2025-12-13 17:24:41] 2025-12-13 16:23:55,441 | INFO     | sum of deviations: 8363194245.000001
[2025-12-13 17:24:41] 2025-12-13 16:23:55,441 | INFO     | mean x: 1765635551.0
[2025-12-13 17:24:41] 2025-12-13 16:23:55,441 | INFO     | mean y: 2474354.9696969697
[2025-12-13 17:24:41] 2025-12-13 16:23:55,441 | INFO     | intersect: -3860902056.925904
[2025-12-13 17:24:41] 2025-12-13 16:23:55,442 | INFO     | chi2: 0.00042629943993701866
[2025-12-13 17:24:41] 2025-12-13 16:23:55,442 | INFO     | current memory leak: 2.19 B/s (using 231 data points, chi2=0.00)
[2025-12-13 17:24:41] 2025-12-13 16:23:55,443 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2025-12-13 17:24:41] 2025-12-13 16:23:55,443 | INFO     | ..............................
[2025-12-13 17:24:41] 2025-12-13 16:23:55,443 | INFO     | . Timing measurements:
[2025-12-13 17:24:41] 2025-12-13 16:23:55,443 | INFO     | . get job = 0 s
[2025-12-13 17:24:41] 2025-12-13 16:23:55,443 | INFO     | . initial setup = 3 s
[2025-12-13 17:24:41] 2025-12-13 16:23:55,443 | INFO     | . payload setup = 119 s
[2025-12-13 17:24:41] 2025-12-13 16:23:55,443 | INFO     | . stage-in = 0 s
[2025-12-13 17:24:41] 2025-12-13 16:23:55,443 | INFO     | . payload execution = 16394 s
[2025-12-13 17:24:41] 2025-12-13 16:23:55,444 | INFO     | . stage-out = 3 s
[2025-12-13 17:24:41] 2025-12-13 16:23:55,444 | INFO     | . log creation = 1 s
[2025-12-13 17:24:41] 2025-12-13 16:23:55,444 | INFO     | ..............................
[2025-12-13 17:24:41] 2025-12-13 16:23:55,792 | INFO     | 
[2025-12-13 17:24:41] 2025-12-13 16:23:55,792 | INFO     | job summary report
[2025-12-13 17:24:41] 2025-12-13 16:23:55,792 | INFO     | --------------------------------------------------
[2025-12-13 17:24:41] 2025-12-13 16:23:55,792 | INFO     | PanDA job id: 6929041574
[2025-12-13 17:24:41] 2025-12-13 16:23:55,792 | INFO     | task id: 47886831
[2025-12-13 17:24:41] 2025-12-13 16:23:55,792 | INFO     | errors: (none)
[2025-12-13 17:24:41] 2025-12-13 16:23:55,793 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 17:24:41] 2025-12-13 16:23:55,793 | INFO     | pilot state: finished 
[2025-12-13 17:24:41] 2025-12-13 16:23:55,793 | INFO     | transexitcode: 0
[2025-12-13 17:24:41] 2025-12-13 16:23:55,793 | INFO     | exeerrorcode: 0
[2025-12-13 17:24:41] 2025-12-13 16:23:55,793 | INFO     | exeerrordiag: 
[2025-12-13 17:24:41] 2025-12-13 16:23:55,793 | INFO     | exitcode: 0
[2025-12-13 17:24:41] 2025-12-13 16:23:55,793 | INFO     | exitmsg: OK
[2025-12-13 17:24:41] 2025-12-13 16:23:55,793 | INFO     | cpuconsumptiontime: 59586 s
[2025-12-13 17:24:41] 2025-12-13 16:23:55,793 | INFO     | nevents: 400
[2025-12-13 17:24:41] 2025-12-13 16:23:55,794 | INFO     | neventsw: 0
[2025-12-13 17:24:41] 2025-12-13 16:23:55,794 | INFO     | pid: 26248
[2025-12-13 17:24:41] 2025-12-13 16:23:55,794 | INFO     | pgrp: 26248
[2025-12-13 17:24:41] 2025-12-13 16:23:55,794 | INFO     | corecount: 8
[2025-12-13 17:24:41] 2025-12-13 16:23:55,794 | INFO     | event service: False
[2025-12-13 17:24:41] 2025-12-13 16:23:55,794 | INFO     | sizes: {0: 2283989, 1: 2283989, 12: 2284017, 22: 2284045, 33: 2284073, 44: 2284129, 55: 2284285, 65: 2284313, 76: 2284341, 87: 2284397, 91: 2284687, 97: 2284995, 1
[2025-12-13 17:24:41] 2025-12-13 16:23:55,794 | INFO     | --------------------------------------------------
[2025-12-13 17:24:41] 2025-12-13 16:23:55,794 | INFO     | 
[2025-12-13 17:24:41] 2025-12-13 16:23:55,795 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-12-13 17:24:41] 2025-12-13 16:23:55,835 | INFO     | time since job start (16794s) is within the limit (174528.0s)
[2025-12-13 17:24:41] 2025-12-13 16:23:56,092 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 17:24:41] 2025-12-13 16:23:56,092 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 17:24:41] 2025-12-13 16:23:56,092 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 17:24:41] 2025-12-13 16:23:56,092 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 17:24:41] 2025-12-13 16:23:56,092 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 17:24:41] 2025-12-13 16:23:56,092 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 17:24:41] 2025-12-13 16:23:56,093 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 17:24:41] 2025-12-13 16:23:56,093 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 17:24:41] 2025-12-13 16:23:56,093 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 17:24:41] 2025-12-13 16:23:56,093 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 17:24:41] 2025-12-13 16:23:56,093 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 17:24:41] 2025-12-13 16:23:56,093 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 17:24:41] 2025-12-13 16:23:56,093 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 17:24:41] 2025-12-13 16:23:56,093 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 17:24:41] 2025-12-13 16:23:56,093 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 17:24:41] 2025-12-13 16:23:56,093 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 17:24:41] 2025-12-13 16:23:56,094 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 17:24:41] 2025-12-13 16:23:56,094 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 17:24:41] 2025-12-13 16:23:56,094 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 17:24:41] 2025-12-13 16:23:56,094 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 17:24:41] 2025-12-13 16:23:56,094 | INFO     | job 6929041574 has completed (purged errors)
[2025-12-13 17:24:41] 2025-12-13 16:23:56,094 | INFO     | overall cleanup function is called
[2025-12-13 17:24:41] 2025-12-13 16:23:57,104 | INFO     | --- collectZombieJob: --- 10, [26248]
[2025-12-13 17:24:41] 2025-12-13 16:23:57,104 | INFO     | zombie collector waiting for pid 26248
[2025-12-13 17:24:41] 2025-12-13 16:23:57,104 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 17:24:41] 2025-12-13 16:23:57,104 | INFO     | collected zombie processes
[2025-12-13 17:24:41] 2025-12-13 16:23:57,104 | INFO     | will attempt to kill all subprocesses of pid=26248
[2025-12-13 17:24:41] 2025-12-13 16:23:57,237 | INFO     | process IDs to be killed: [26248] (in reverse order)
[2025-12-13 17:24:41] 2025-12-13 16:23:57,990 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 17:24:41] 2025-12-13 16:23:57,990 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 17:24:41] 2025-12-13 16:23:57,994 | INFO     | did not find any defunct processes belonging to 26248
[2025-12-13 17:24:41] 2025-12-13 16:23:57,997 | INFO     | did not find any defunct processes belonging to 26248
[2025-12-13 17:24:41] 2025-12-13 16:23:57,998 | INFO     | ready for new job
[2025-12-13 17:24:41] 2025-12-13 16:23:57,998 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 17:24:41] 2025-12-13 16:23:58,000 | INFO     | ***************************************
[2025-12-13 17:24:41] 2025-12-13 16:23:58,000 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 17:24:41] 2025-12-13 16:23:58,000 | INFO     | ***************************************
[2025-12-13 17:24:41] 2025-12-13 16:23:58,000 | INFO     | 
[2025-12-13 17:24:41] 2025-12-13 16:23:58,001 | INFO     | pilot is running in a VM
[2025-12-13 17:24:41] 2025-12-13 16:23:58,001 | INFO     | architecture information:
[2025-12-13 17:24:41] 2025-12-13 16:23:58,018 | INFO     | executing command: cat /etc/os-release
[2025-12-13 17:24:41] 2025-12-13 16:23:58,334 | INFO     | cat /etc/os-release:
[2025-12-13 17:24:41] NAME="CentOS Linux"
[2025-12-13 17:24:41] VERSION="7 (Core)"
[2025-12-13 17:24:41] ID="centos"
[2025-12-13 17:24:41] ID_LIKE="rhel fedora"
[2025-12-13 17:24:41] VERSION_ID="7"
[2025-12-13 17:24:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 17:24:41] ANSI_COLOR="0;31"
[2025-12-13 17:24:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 17:24:41] HOME_URL="https://www.centos.org/"
[2025-12-13 17:24:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 17:24:41] 
[2025-12-13 17:24:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 17:24:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 17:24:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 17:24:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 17:24:41] 
[2025-12-13 17:24:41] 2025-12-13 16:23:58,335 | INFO     | ***************************************
[2025-12-13 17:24:41] 2025-12-13 16:23:58,838 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-12-13 17:24:41] 2025-12-13 16:23:59,032 | INFO     | sufficient remaining disk space (496553164800 B)
[2025-12-13 17:24:41] 2025-12-13 16:23:59,032 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 17:24:41] 2025-12-13 16:23:59,032 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 17:24:41] 2025-12-13 16:23:59,033 | INFO     | update_server=False
[2025-12-13 17:24:41] 2025-12-13 16:23:59,033 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 17:24:41] 2025-12-13 16:23:59,033 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 17:24:41] 2025-12-13 16:23:59,033 | INFO     | aborting loop
[2025-12-13 17:24:41] 2025-12-13 16:23:59,033 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 17:24:41] 2025-12-13 16:23:59,425 | INFO     | all payload control threads have been joined
[2025-12-13 17:24:41] 2025-12-13 16:23:59,489 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 17:24:41] 2025-12-13 16:24:00,038 | INFO     | [job] retrieve thread has finished
[2025-12-13 17:24:41] 2025-12-13 16:24:00,039 | INFO     | [job] job monitor thread has finished
[2025-12-13 17:24:41] 2025-12-13 16:24:00,060 | INFO     | all data control threads have been joined
[2025-12-13 17:24:41] 2025-12-13 16:24:00,431 | INFO     | [payload] control thread has finished
[2025-12-13 17:24:41] 2025-12-13 16:24:00,581 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 17:24:41] 2025-12-13 16:24:00,588 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 17:24:41] 2025-12-13 16:24:00,713 | INFO     | all job control threads have been joined
[2025-12-13 17:24:41] 2025-12-13 16:24:01,041 | INFO     | [data] copytool_out thread has finished
[2025-12-13 17:24:41] 2025-12-13 16:24:01,065 | INFO     | [data] control thread has finished
[2025-12-13 17:24:41] 2025-12-13 16:24:01,230 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 17:24:41] 2025-12-13 16:24:01,271 | INFO     | [data] copytool_in thread has finished
[2025-12-13 17:24:41] 2025-12-13 16:24:01,281 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 17:24:41] 2025-12-13 16:24:01,294 | INFO     | [job] validate thread has finished
[2025-12-13 17:24:41] 2025-12-13 16:24:01,435 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 17:24:41] 2025-12-13 16:24:01,475 | INFO     | [payload] validate_post thread has finished
[2025-12-13 17:24:41] 2025-12-13 16:24:01,491 | INFO     | [payload] failed_post thread has finished
[2025-12-13 17:24:41] 2025-12-13 16:24:01,587 | INFO     | [job] queue monitor thread has finished
[2025-12-13 17:24:41] 2025-12-13 16:24:01,719 | INFO     | [job] control thread has finished
[2025-12-13 17:24:41] 2025-12-13 16:24:03,498 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 17:24:41] 2025-12-13 16:24:29,074 | INFO     | PID=19323 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 17:24:41] 2025-12-13 16:24:29,075 | INFO     | .. there are 9 such processes running
[2025-12-13 17:24:41] 2025-12-13 16:24:29,075 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 17:24:41] 2025-12-13 16:24:29,075 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 17:24:41] 2025-12-13 16:24:29,075 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 17:24:41] 2025-12-13 16:24:30,646 | INFO     | [monitor] cgroup control has ended
[2025-12-13 17:24:41] 2025-12-13 16:24:31,655 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140083080263488)>', '<ExcThread(monitor, started 140082463876864)>']
[2025-12-13 17:24:41] 2025-12-13 16:24:32,093 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 17:24:41] 2025-12-13 16:24:32,093 | INFO     | [monitor] control thread has ended
[2025-12-13 17:24:41] 2025-12-13 16:24:36,681 | INFO     | all workflow threads have been joined
[2025-12-13 17:24:41] 2025-12-13 16:24:36,681 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 17:24:41] 2025-12-13 16:24:36,681 | INFO     | traces error code: 0
[2025-12-13 17:24:41] 2025-12-13 16:24:36,682 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 17:24:41] 2025-12-13 16:24:37,074 [wrapper] ==== pilot stdout END ====
[2025-12-13 17:24:41] 2025-12-13 16:24:37,166 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 17:24:41] 2025-12-13 16:24:37,221 [wrapper] pilotpid: 19323
[2025-12-13 17:24:41] 2025-12-13 16:24:37,308 [wrapper] Pilot exit status: 0
[2025-12-13 17:24:41] 2025-12-13 16:24:37,806 [wrapper] pandaids: 6929041574
[2025-12-13 17:24:41] 2025-12-13 16:24:38,543 [wrapper] cleanup supervisor_pilot 23954 19325
[2025-12-13 17:24:41] 2025-12-13 16:24:38,634 [wrapper] Test setup, not cleaning
[2025-12-13 17:24:41] 2025-12-13 16:24:38,726 [wrapper] apfmon messages muted
[2025-12-13 17:24:41] 2025-12-13 16:24:38,813 [wrapper] ==== wrapper stdout END ====
[2025-12-13 17:24:41] 2025-12-13 16:24:38,877 [wrapper] ==== wrapper stderr END ====
[2025-12-13 17:24:41]  *** Error codes and diagnostics ***
[2025-12-13 17:24:41]     "exeErrorCode": 0,
[2025-12-13 17:24:41]     "exeErrorDiag": "",
[2025-12-13 17:24:41]     "pilotErrorCode": 0,
[2025-12-13 17:24:41]     "pilotErrorDiag": "",
[2025-12-13 17:24:41]  *** Listing of results directory ***
[2025-12-13 17:24:41] total 337668
[2025-12-13 17:24:41] -rw-r--r--. 1 boinc boinc    579449 Dec 13 07:26 pilot3.tar.gz
[2025-12-13 17:24:41] -rwx------. 1 boinc boinc     36322 Dec 13 07:47 runpilot2-wrapper.sh
[2025-12-13 17:24:41] -rw-r--r--. 1 boinc boinc      5112 Dec 13 07:47 queuedata.json
[2025-12-13 17:24:41] -rw-r--r--. 1 boinc boinc       100 Dec 13 12:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 17:24:41] -rwxr-xr-x. 1 boinc boinc      7986 Dec 13 12:39 run_atlas
[2025-12-13 17:24:41] -rw-r--r--. 1 boinc boinc       105 Dec 13 12:39 job.xml
[2025-12-13 17:24:41] -rw-r--r--. 1 boinc boinc      6392 Dec 13 12:39 init_data.xml
[2025-12-13 17:24:41] -rw-r--r--. 2 boinc boinc 192016316 Dec 13 12:39 EVNT.47886829._000147.pool.root.1
[2025-12-13 17:24:41] -rw-r--r--. 2 boinc boinc     15847 Dec 13 12:39 start_atlas.sh
[2025-12-13 17:24:41] drwxrwx--x. 2 boinc boinc        68 Dec 13 12:39 shared
[2025-12-13 17:24:41] -rw-r--r--. 2 boinc boinc    592415 Dec 13 12:39 input.tar.gz
[2025-12-13 17:24:41] -rw-r--r--. 1 boinc boinc         0 Dec 13 12:39 boinc_lockfile
[2025-12-13 17:24:41] -rw-r--r--. 1 boinc boinc      2537 Dec 13 12:40 pandaJob.out
[2025-12-13 17:24:41] -rw-------. 1 boinc boinc    991728 Dec 13 12:43 agis_schedconf.cvmfs.json
[2025-12-13 17:24:41] drwx------. 5 boinc boinc      4096 Dec 13 12:44 pilot3
[2025-12-13 17:24:41] -rw-------. 1 boinc boinc 144378154 Dec 13 17:21 HITS.47886831._003620.pool.root.1
[2025-12-13 17:24:41] -rw-r--r--. 1 boinc boinc       531 Dec 13 17:21 boinc_task_state.xml
[2025-12-13 17:24:41] -rw-------. 1 boinc boinc      1014 Dec 13 17:22 memory_monitor_summary.json
[2025-12-13 17:24:41] -rw-------. 1 boinc boinc   1516240 Dec 13 17:22 agis_ddmendpoints.agis.ALL.json
[2025-12-13 17:24:41] -rw-------. 1 boinc boinc    492541 Dec 13 17:22 log.47886831._003620.job.log.tgz.1
[2025-12-13 17:24:41] -rw-------. 1 boinc boinc        95 Dec 13 17:23 pilot_heartbeat.json
[2025-12-13 17:24:41] -rw-------. 1 boinc boinc      7772 Dec 13 17:23 heartbeat.json
[2025-12-13 17:24:41] -rw-r--r--. 1 boinc boinc        28 Dec 13 17:24 wrapper_checkpoint.txt
[2025-12-13 17:24:41] -rw-r--r--. 1 boinc boinc      8192 Dec 13 17:24 boinc_mmap_file
[2025-12-13 17:24:41] -rw-------. 1 boinc boinc      4884 Dec 13 17:24 pilotlog.txt
[2025-12-13 17:24:41] -rw-------. 1 boinc boinc   2246510 Dec 13 17:24 log.47886831._003620.job.log.1
[2025-12-13 17:24:41] -rw-------. 1 boinc boinc       357 Dec 13 17:24 output.list
[2025-12-13 17:24:41] -rw-r--r--. 1 boinc boinc       620 Dec 13 17:24 runtime_log
[2025-12-13 17:24:41] -rw-------. 1 boinc boinc   2754560 Dec 13 17:24 result.tar.gz
[2025-12-13 17:24:41] -rw-r--r--. 1 boinc boinc      8817 Dec 13 17:24 runtime_log.err
[2025-12-13 17:24:41] -rw-------. 1 boinc boinc       656 Dec 13 17:24 fT2LDm2aYo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmiuNKDmZT764m.diag
[2025-12-13 17:24:41] -rw-r--r--. 1 boinc boinc     20777 Dec 13 17:24 stderr.txt
[2025-12-13 17:24:41] HITS file was successfully produced:
[2025-12-13 17:24:41] -rw-------. 1 boinc boinc 144378154 Dec 13 17:21 shared/HITS.pool.root.1
[2025-12-13 17:24:41]  *** Contents of shared directory: ***
[2025-12-13 17:24:41] total 331800
[2025-12-13 17:24:41] -rw-r--r--. 2 boinc boinc 192016316 Dec 13 12:39 ATLAS.root_0
[2025-12-13 17:24:41] -rw-r--r--. 2 boinc boinc     15847 Dec 13 12:39 start_atlas.sh
[2025-12-13 17:24:41] -rw-r--r--. 2 boinc boinc    592415 Dec 13 12:39 input.tar.gz
[2025-12-13 17:24:41] -rw-------. 1 boinc boinc 144378154 Dec 13 17:21 HITS.pool.root.1
[2025-12-13 17:24:41] -rw-------. 1 boinc boinc   2754560 Dec 13 17:24 result.tar.gz
17:24:43 (15517): run_atlas exited; CPU time 59833.492080
17:24:43 (15517): called boinc_finish(0)

</stderr_txt>
]]>

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