Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:55:17 (20138): wrapper (7.7.26015): starting
07:55:17 (20138): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 07:55:17] Arguments: --nthreads 8
[2025-12-13 07:55:17] Threads: 8
[2025-12-13 07:55:17] Checking for CVMFS
[2025-12-13 07:55:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 07:55:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 07:55:21] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 07:55:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 07:55:22] 2.11.2.0 8605 109520 128596 153951 2 11 13546203 25165825 4662 130560 38 33831855 99.814 25798018 1917 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-13 07:55:22] CVMFS is ok
[2025-12-13 07:55:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 07:55:22] Checking for apptainer binary...
[2025-12-13 07:55:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 07:55:22] Running /usr/bin/apptainer --version
[2025-12-13 07:55:22] apptainer version 1.3.2-1.el7
[2025-12-13 07:55:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 07:56:24] cg-vwn213.simple-grid.lan
[2025-12-13 07:56:24] apptainer works
[2025-12-13 07:56:24] Set ATHENA_PROC_NUMBER=8
[2025-12-13 07:56:24] Set ATHENA_CORE_NUMBER=8
[2025-12-13 07:56:24] Starting ATLAS job with PandaID=6929038547
[2025-12-13 07:56:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 12:39:51]  *** The last 200 lines of the pilot log: ***
[2025-12-13 12:39:51] 2025-12-13 11:38:45,384 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-13 12:39:51] 2025-12-13 11:38:45,385 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-13 12:39:51] 2025-12-13 11:38:45,387 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6929038547/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 12:39:51] 2025-12-13 11:38:45,388 | INFO     | extracted standard info from prmon json
[2025-12-13 12:39:51] 2025-12-13 11:38:45,388 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 12:39:51] 2025-12-13 11:38:45,388 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 12:39:51] 2025-12-13 11:38:45,389 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 12:39:51] 2025-12-13 11:38:45,389 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 12:39:51] 2025-12-13 11:38:45,395 | INFO     | fitting pss+swap vs Time
[2025-12-13 12:39:51] 2025-12-13 11:38:45,396 | INFO     | sum of square deviations: 5640782972.0
[2025-12-13 12:39:51] 2025-12-13 11:38:45,398 | INFO     | sum of deviations: 81711753766.99998
[2025-12-13 12:39:51] 2025-12-13 11:38:45,399 | INFO     | mean x: 1765617784.0
[2025-12-13 12:39:51] 2025-12-13 11:38:45,399 | INFO     | mean y: 2440554.338403042
[2025-12-13 12:39:51] 2025-12-13 11:38:45,399 | INFO     | intersect: -25574101980.44575
[2025-12-13 12:39:51] 2025-12-13 11:38:45,399 | INFO     | chi2: 8.736905717393084
[2025-12-13 12:39:51] 2025-12-13 11:38:45,400 | INFO     | sum of square deviations: 5325139844.5
[2025-12-13 12:39:51] 2025-12-13 11:38:45,402 | INFO     | sum of deviations: 97719008224.5
[2025-12-13 12:39:51] 2025-12-13 11:38:45,402 | INFO     | mean x: 1765617631.5
[2025-12-13 12:39:51] 2025-12-13 11:38:45,403 | INFO     | mean y: 2448159.4379844964
[2025-12-13 12:39:51] 2025-12-13 11:38:45,403 | INFO     | intersect: -32397527971.155205
[2025-12-13 12:39:51] 2025-12-13 11:38:45,403 | INFO     | chi2: 8.041895456977363
[2025-12-13 12:39:51] 2025-12-13 11:38:45,403 | INFO     | current chi2=8.041895456977363 (change=7.954878796873385 %)
[2025-12-13 12:39:51] 2025-12-13 11:38:45,403 | INFO     | right removable region: 257
[2025-12-13 12:39:51] 2025-12-13 11:38:45,404 | INFO     | sum of square deviations: 5325139844.5
[2025-12-13 12:39:51] 2025-12-13 11:38:45,406 | INFO     | sum of deviations: -11160297760.999985
[2025-12-13 12:39:51] 2025-12-13 11:38:45,406 | INFO     | mean x: 1765617936.5
[2025-12-13 12:39:51] 2025-12-13 11:38:45,406 | INFO     | mean y: 2485405.3488372094
[2025-12-13 12:39:51] 2025-12-13 11:38:45,409 | INFO     | intersect: 3702824265.7177773
[2025-12-13 12:39:51] 2025-12-13 11:38:45,409 | INFO     | chi2: 3.5763234794139107
[2025-12-13 12:39:51] 2025-12-13 11:38:45,409 | INFO     | current chi2=3.5763234794139107 (change=59.06647507601795 %)
[2025-12-13 12:39:51] 2025-12-13 11:38:45,410 | INFO     | sum of square deviations: 5021496942.0
[2025-12-13 12:39:51] 2025-12-13 11:38:45,412 | INFO     | sum of deviations: -74528077055.0
[2025-12-13 12:39:51] 2025-12-13 11:38:45,412 | INFO     | mean x: 1765618089.0
[2025-12-13 12:39:51] 2025-12-13 11:38:45,412 | INFO     | mean y: 2517160.6007905137
[2025-12-13 12:39:51] 2025-12-13 11:38:45,412 | INFO     | intersect: 26207476061.618053
[2025-12-13 12:39:51] 2025-12-13 11:38:45,413 | INFO     | chi2: 1.2069959667812422
[2025-12-13 12:39:51] 2025-12-13 11:38:45,413 | INFO     | current chi2=1.2069959667812422 (change=66.25036930442754 %)
[2025-12-13 12:39:51] 2025-12-13 11:38:45,413 | INFO     | sum of square deviations: 4729621702.0
[2025-12-13 12:39:51] 2025-12-13 11:38:45,416 | INFO     | sum of deviations: -87206816492.49998
[2025-12-13 12:39:51] 2025-12-13 11:38:45,416 | INFO     | mean x: 1765618241.5
[2025-12-13 12:39:51] 2025-12-13 11:38:45,416 | INFO     | mean y: 2523755.818548387
[2025-12-13 12:39:51] 2025-12-13 11:38:45,416 | INFO     | intersect: 32557758758.480717
[2025-12-13 12:39:51] 2025-12-13 11:38:45,416 | INFO     | chi2: 1.0499407399961302
[2025-12-13 12:39:51] 2025-12-13 11:38:45,417 | INFO     | current chi2=1.0499407399961302 (change=13.01207552531755 %)
[2025-12-13 12:39:51] 2025-12-13 11:38:45,417 | INFO     | left removable region: 30
[2025-12-13 12:39:51] 2025-12-13 11:38:45,417 | INFO     | sum of square deviations: 3627000098.0
[2025-12-13 12:39:51] 2025-12-13 11:38:45,419 | INFO     | sum of deviations: -55488678548.0
[2025-12-13 12:39:51] 2025-12-13 11:38:45,419 | INFO     | mean x: 1765618516.0
[2025-12-13 12:39:51] 2025-12-13 11:38:45,419 | INFO     | mean y: 2525679.832599119
[2025-12-13 12:39:51] 2025-12-13 11:38:45,419 | INFO     | intersect: 27014335888.148945
[2025-12-13 12:39:51] 2025-12-13 11:38:45,420 | INFO     | chi2: 0.22729474928385898
[2025-12-13 12:39:51] 2025-12-13 11:38:45,420 | INFO     | current memory leak: -15.30 B/s (using 227 data points, chi2=0.23)
[2025-12-13 12:39:51] 2025-12-13 11:38:45,421 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2025-12-13 12:39:51] 2025-12-13 11:38:45,421 | INFO     | ..............................
[2025-12-13 12:39:51] 2025-12-13 11:38:45,421 | INFO     | . Timing measurements:
[2025-12-13 12:39:51] 2025-12-13 11:38:45,421 | INFO     | . get job = 0 s
[2025-12-13 12:39:51] 2025-12-13 11:38:45,421 | INFO     | . initial setup = 7 s
[2025-12-13 12:39:51] 2025-12-13 11:38:45,421 | INFO     | . payload setup = 160 s
[2025-12-13 12:39:51] 2025-12-13 11:38:45,421 | INFO     | . stage-in = 0 s
[2025-12-13 12:39:51] 2025-12-13 11:38:45,421 | INFO     | . payload execution = 16168 s
[2025-12-13 12:39:51] 2025-12-13 11:38:45,421 | INFO     | . stage-out = 18 s
[2025-12-13 12:39:51] 2025-12-13 11:38:45,421 | INFO     | . log creation = 1 s
[2025-12-13 12:39:51] 2025-12-13 11:38:45,422 | INFO     | ..............................
[2025-12-13 12:39:51] 2025-12-13 11:38:45,562 | INFO     | 
[2025-12-13 12:39:51] 2025-12-13 11:38:45,562 | INFO     | job summary report
[2025-12-13 12:39:51] 2025-12-13 11:38:45,562 | INFO     | --------------------------------------------------
[2025-12-13 12:39:51] 2025-12-13 11:38:45,562 | INFO     | PanDA job id: 6929038547
[2025-12-13 12:39:51] 2025-12-13 11:38:45,562 | INFO     | task id: 47886933
[2025-12-13 12:39:51] 2025-12-13 11:38:45,563 | INFO     | errors: (none)
[2025-12-13 12:39:51] 2025-12-13 11:38:45,563 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 12:39:51] 2025-12-13 11:38:45,563 | INFO     | pilot state: finished 
[2025-12-13 12:39:51] 2025-12-13 11:38:45,563 | INFO     | transexitcode: 0
[2025-12-13 12:39:51] 2025-12-13 11:38:45,563 | INFO     | exeerrorcode: 0
[2025-12-13 12:39:51] 2025-12-13 11:38:45,563 | INFO     | exeerrordiag: 
[2025-12-13 12:39:51] 2025-12-13 11:38:45,563 | INFO     | exitcode: 0
[2025-12-13 12:39:51] 2025-12-13 11:38:45,563 | INFO     | exitmsg: OK
[2025-12-13 12:39:51] 2025-12-13 11:38:45,563 | INFO     | cpuconsumptiontime: 57528 s
[2025-12-13 12:39:51] 2025-12-13 11:38:45,563 | INFO     | nevents: 400
[2025-12-13 12:39:51] 2025-12-13 11:38:45,564 | INFO     | neventsw: 0
[2025-12-13 12:39:51] 2025-12-13 11:38:45,564 | INFO     | pid: 30879
[2025-12-13 12:39:51] 2025-12-13 11:38:45,564 | INFO     | pgrp: 30879
[2025-12-13 12:39:51] 2025-12-13 11:38:45,564 | INFO     | corecount: 8
[2025-12-13 12:39:51] 2025-12-13 11:38:45,564 | INFO     | event service: False
[2025-12-13 12:39:51] 2025-12-13 11:38:45,564 | INFO     | sizes: {0: 2283736, 1: 2283991, 12: 2283991, 23: 2284019, 33: 2284047, 44: 2284103, 55: 2284259, 66: 2284287, 76: 2284315, 87: 2284371, 97: 2284661, 98: 2284969, 1
[2025-12-13 12:39:51] 2025-12-13 11:38:45,564 | INFO     | --------------------------------------------------
[2025-12-13 12:39:51] 2025-12-13 11:38:45,564 | INFO     | 
[2025-12-13 12:39:51] 2025-12-13 11:38:45,565 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-12-13 12:39:51] 2025-12-13 11:38:45,852 | INFO     | time since job start (16652s) is within the limit (174528.0s)
[2025-12-13 12:39:51] 2025-12-13 11:38:46,022 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 12:39:51] 2025-12-13 11:38:46,023 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 12:39:51] 2025-12-13 11:38:46,023 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 12:39:51] 2025-12-13 11:38:46,023 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 12:39:51] 2025-12-13 11:38:46,023 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 12:39:51] 2025-12-13 11:38:46,023 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 12:39:51] 2025-12-13 11:38:46,023 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 12:39:51] 2025-12-13 11:38:46,023 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 12:39:51] 2025-12-13 11:38:46,023 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 12:39:51] 2025-12-13 11:38:46,024 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 12:39:51] 2025-12-13 11:38:46,024 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 12:39:51] 2025-12-13 11:38:46,024 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 12:39:51] 2025-12-13 11:38:46,024 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 12:39:51] 2025-12-13 11:38:46,024 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 12:39:51] 2025-12-13 11:38:46,024 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 12:39:51] 2025-12-13 11:38:46,024 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 12:39:51] 2025-12-13 11:38:46,024 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 12:39:51] 2025-12-13 11:38:46,025 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 12:39:51] 2025-12-13 11:38:46,025 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 12:39:51] 2025-12-13 11:38:46,025 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 12:39:51] 2025-12-13 11:38:46,025 | INFO     | job 6929038547 has completed (purged errors)
[2025-12-13 12:39:51] 2025-12-13 11:38:46,025 | INFO     | overall cleanup function is called
[2025-12-13 12:39:51] 2025-12-13 11:38:47,035 | INFO     | --- collectZombieJob: --- 10, [30879]
[2025-12-13 12:39:51] 2025-12-13 11:38:47,035 | INFO     | zombie collector waiting for pid 30879
[2025-12-13 12:39:51] 2025-12-13 11:38:47,035 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 12:39:51] 2025-12-13 11:38:47,036 | INFO     | collected zombie processes
[2025-12-13 12:39:51] 2025-12-13 11:38:47,036 | INFO     | will attempt to kill all subprocesses of pid=30879
[2025-12-13 12:39:51] 2025-12-13 11:38:47,173 | INFO     | process IDs to be killed: [30879] (in reverse order)
[2025-12-13 12:39:51] 2025-12-13 11:38:48,098 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 12:39:51] 2025-12-13 11:38:48,098 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 12:39:51] 2025-12-13 11:38:48,102 | INFO     | did not find any defunct processes belonging to 30879
[2025-12-13 12:39:51] 2025-12-13 11:38:48,104 | INFO     | did not find any defunct processes belonging to 30879
[2025-12-13 12:39:51] 2025-12-13 11:38:48,105 | INFO     | ready for new job
[2025-12-13 12:39:51] 2025-12-13 11:38:48,105 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 12:39:51] 2025-12-13 11:38:48,107 | INFO     | ***************************************
[2025-12-13 12:39:51] 2025-12-13 11:38:48,109 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 12:39:51] 2025-12-13 11:38:48,109 | INFO     | ***************************************
[2025-12-13 12:39:51] 2025-12-13 11:38:48,109 | INFO     | 
[2025-12-13 12:39:51] 2025-12-13 11:38:48,110 | INFO     | pilot is running in a VM
[2025-12-13 12:39:51] 2025-12-13 11:38:48,110 | INFO     | architecture information:
[2025-12-13 12:39:51] 2025-12-13 11:38:48,118 | INFO     | executing command: cat /etc/os-release
[2025-12-13 12:39:51] 2025-12-13 11:38:48,238 | INFO     | cat /etc/os-release:
[2025-12-13 12:39:51] NAME="CentOS Linux"
[2025-12-13 12:39:51] VERSION="7 (Core)"
[2025-12-13 12:39:51] ID="centos"
[2025-12-13 12:39:51] ID_LIKE="rhel fedora"
[2025-12-13 12:39:51] VERSION_ID="7"
[2025-12-13 12:39:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 12:39:51] ANSI_COLOR="0;31"
[2025-12-13 12:39:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 12:39:51] HOME_URL="https://www.centos.org/"
[2025-12-13 12:39:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 12:39:51] 
[2025-12-13 12:39:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 12:39:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 12:39:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 12:39:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 12:39:51] 
[2025-12-13 12:39:51] 2025-12-13 11:38:48,239 | INFO     | ***************************************
[2025-12-13 12:39:51] 2025-12-13 11:38:48,742 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-12-13 12:39:51] 2025-12-13 11:38:48,925 | INFO     | sufficient remaining disk space (496713596928 B)
[2025-12-13 12:39:51] 2025-12-13 11:38:48,926 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 12:39:51] 2025-12-13 11:38:48,926 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 12:39:51] 2025-12-13 11:38:48,926 | INFO     | update_server=False
[2025-12-13 12:39:51] 2025-12-13 11:38:48,926 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 12:39:51] 2025-12-13 11:38:48,927 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 12:39:51] 2025-12-13 11:38:48,929 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 12:39:51] 2025-12-13 11:38:48,929 | INFO     | aborting loop
[2025-12-13 12:39:51] 2025-12-13 11:38:49,228 | INFO     | all payload control threads have been joined
[2025-12-13 12:39:51] 2025-12-13 11:38:49,601 | INFO     | all data control threads have been joined
[2025-12-13 12:39:51] 2025-12-13 11:38:49,828 | INFO     | all job control threads have been joined
[2025-12-13 12:39:51] 2025-12-13 11:38:49,932 | INFO     | [job] retrieve thread has finished
[2025-12-13 12:39:51] 2025-12-13 11:38:49,935 | INFO     | [job] job monitor thread has finished
[2025-12-13 12:39:51] 2025-12-13 11:38:49,948 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 12:39:51] 2025-12-13 11:38:50,118 | INFO     | [job] validate thread has finished
[2025-12-13 12:39:51] 2025-12-13 11:38:50,127 | INFO     | [payload] validate_post thread has finished
[2025-12-13 12:39:51] 2025-12-13 11:38:50,234 | INFO     | [payload] control thread has finished
[2025-12-13 12:39:51] 2025-12-13 11:38:50,471 | INFO     | [payload] failed_post thread has finished
[2025-12-13 12:39:51] 2025-12-13 11:38:50,519 | INFO     | [data] copytool_in thread has finished
[2025-12-13 12:39:51] 2025-12-13 11:38:50,575 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 12:39:51] 2025-12-13 11:38:50,583 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 12:39:51] 2025-12-13 11:38:50,607 | INFO     | [data] control thread has finished
[2025-12-13 12:39:51] 2025-12-13 11:38:50,774 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 12:39:51] 2025-12-13 11:38:50,833 | INFO     | [job] control thread has finished
[2025-12-13 12:39:51] 2025-12-13 11:38:50,934 | INFO     | [data] copytool_out thread has finished
[2025-12-13 12:39:51] 2025-12-13 11:38:51,247 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 12:39:51] 2025-12-13 11:38:51,560 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 12:39:51] 2025-12-13 11:38:51,581 | INFO     | [job] queue monitor thread has finished
[2025-12-13 12:39:51] 2025-12-13 11:38:55,569 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 12:39:51] 2025-12-13 11:39:19,027 | INFO     | PID=24244 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 12:39:51] 2025-12-13 11:39:19,027 | INFO     | .. there are 9 such processes running
[2025-12-13 12:39:51] 2025-12-13 11:39:19,028 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 12:39:51] 2025-12-13 11:39:19,028 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 12:39:51] 2025-12-13 11:39:19,028 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 12:39:51] 2025-12-13 11:39:41,034 | INFO     | [monitor] cgroup control has ended
[2025-12-13 12:39:51] 2025-12-13 11:39:42,228 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139955384743744)>', '<ExcThread(monitor, started 139954730563328)>']
[2025-12-13 12:39:51] 2025-12-13 11:39:43,165 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 12:39:51] 2025-12-13 11:39:43,165 | INFO     | [monitor] control thread has ended
[2025-12-13 12:39:51] 2025-12-13 11:39:47,254 | INFO     | all workflow threads have been joined
[2025-12-13 12:39:51] 2025-12-13 11:39:47,254 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 12:39:51] 2025-12-13 11:39:47,254 | INFO     | traces error code: 0
[2025-12-13 12:39:51] 2025-12-13 11:39:47,255 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 12:39:51] 2025-12-13 11:39:47,597 [wrapper] ==== pilot stdout END ====
[2025-12-13 12:39:51] 2025-12-13 11:39:47,659 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 12:39:51] 2025-12-13 11:39:47,765 [wrapper] pilotpid: 24244
[2025-12-13 12:39:51] 2025-12-13 11:39:47,874 [wrapper] Pilot exit status: 0
[2025-12-13 12:39:51] 2025-12-13 11:39:48,362 [wrapper] pandaids: 6929038547
[2025-12-13 12:39:51] 2025-12-13 11:39:49,229 [wrapper] cleanup supervisor_pilot 12929 24245
[2025-12-13 12:39:51] 2025-12-13 11:39:49,325 [wrapper] Test setup, not cleaning
[2025-12-13 12:39:51] 2025-12-13 11:39:49,431 [wrapper] apfmon messages muted
[2025-12-13 12:39:51] 2025-12-13 11:39:49,529 [wrapper] ==== wrapper stdout END ====
[2025-12-13 12:39:51] 2025-12-13 11:39:49,623 [wrapper] ==== wrapper stderr END ====
[2025-12-13 12:39:51]  *** Error codes and diagnostics ***
[2025-12-13 12:39:51]     "exeErrorCode": 0,
[2025-12-13 12:39:51]     "exeErrorDiag": "",
[2025-12-13 12:39:51]     "pilotErrorCode": 0,
[2025-12-13 12:39:51]     "pilotErrorDiag": "",
[2025-12-13 12:39:51]  *** Listing of results directory ***
[2025-12-13 12:39:51] total 342384
[2025-12-13 12:39:51] -rw-r--r--. 1 boinc boinc    579449 Dec 13 07:26 pilot3.tar.gz
[2025-12-13 12:39:51] -rwx------. 1 boinc boinc     36322 Dec 13 07:47 runpilot2-wrapper.sh
[2025-12-13 12:39:51] -rw-r--r--. 1 boinc boinc      5112 Dec 13 07:47 queuedata.json
[2025-12-13 12:39:51] -rw-r--r--. 1 boinc boinc       100 Dec 13 07:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 12:39:51] -rwxr-xr-x. 1 boinc boinc      7986 Dec 13 07:55 run_atlas
[2025-12-13 12:39:51] -rw-r--r--. 1 boinc boinc       105 Dec 13 07:55 job.xml
[2025-12-13 12:39:51] -rw-r--r--. 1 boinc boinc      6392 Dec 13 07:55 init_data.xml
[2025-12-13 12:39:51] -rw-r--r--. 2 boinc boinc 193900747 Dec 13 07:55 EVNT.47886929._000047.pool.root.1
[2025-12-13 12:39:51] -rw-r--r--. 2 boinc boinc     15847 Dec 13 07:55 start_atlas.sh
[2025-12-13 12:39:51] drwxrwx--x. 2 boinc boinc        68 Dec 13 07:55 shared
[2025-12-13 12:39:51] -rw-r--r--. 2 boinc boinc    592383 Dec 13 07:55 input.tar.gz
[2025-12-13 12:39:51] -rw-r--r--. 1 boinc boinc         0 Dec 13 07:55 boinc_lockfile
[2025-12-13 12:39:51] -rw-r--r--. 1 boinc boinc      2512 Dec 13 07:56 pandaJob.out
[2025-12-13 12:39:51] -rw-------. 1 boinc boinc    991736 Dec 13 08:01 agis_schedconf.cvmfs.json
[2025-12-13 12:39:51] drwx------. 5 boinc boinc      4096 Dec 13 08:01 pilot3
[2025-12-13 12:39:51] -rw-------. 1 boinc boinc 147385937 Dec 13 12:35 HITS.47886933._001157.pool.root.1
[2025-12-13 12:39:51] -rw-r--r--. 1 boinc boinc       531 Dec 13 12:35 boinc_task_state.xml
[2025-12-13 12:39:51] -rw-------. 1 boinc boinc      1018 Dec 13 12:36 memory_monitor_summary.json
[2025-12-13 12:39:51] -rw-------. 1 boinc boinc   1516240 Dec 13 12:36 agis_ddmendpoints.agis.ALL.json
[2025-12-13 12:39:51] -rw-------. 1 boinc boinc    479630 Dec 13 12:36 log.47886933._001157.job.log.tgz.1
[2025-12-13 12:39:51] -rw-------. 1 boinc boinc        95 Dec 13 12:38 pilot_heartbeat.json
[2025-12-13 12:39:51] -rw-------. 1 boinc boinc      7784 Dec 13 12:38 heartbeat.json
[2025-12-13 12:39:51] -rw-r--r--. 1 boinc boinc      8192 Dec 13 12:39 boinc_mmap_file
[2025-12-13 12:39:51] -rw-r--r--. 1 boinc boinc        28 Dec 13 12:39 wrapper_checkpoint.txt
[2025-12-13 12:39:51] -rw-------. 1 boinc boinc      4884 Dec 13 12:39 pilotlog.txt
[2025-12-13 12:39:51] -rw-------. 1 boinc boinc   2224978 Dec 13 12:39 log.47886933._001157.job.log.1
[2025-12-13 12:39:51] -rw-------. 1 boinc boinc       357 Dec 13 12:39 output.list
[2025-12-13 12:39:51] -rw-r--r--. 1 boinc boinc       620 Dec 13 12:39 runtime_log
[2025-12-13 12:39:51] -rw-------. 1 boinc boinc   2723840 Dec 13 12:39 result.tar.gz
[2025-12-13 12:39:51] -rw-r--r--. 1 boinc boinc      8817 Dec 13 12:39 runtime_log.err
[2025-12-13 12:39:51] -rw-------. 1 boinc boinc       657 Dec 13 12:39 afNODm2aYo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRzRKDmhRz4Jm.diag
[2025-12-13 12:39:51] -rw-r--r--. 1 boinc boinc     20775 Dec 13 12:39 stderr.txt
[2025-12-13 12:39:52] HITS file was successfully produced:
[2025-12-13 12:39:52] -rw-------. 1 boinc boinc 147385937 Dec 13 12:35 shared/HITS.pool.root.1
[2025-12-13 12:39:52]  *** Contents of shared directory: ***
[2025-12-13 12:39:52] total 336548
[2025-12-13 12:39:52] -rw-r--r--. 2 boinc boinc 193900747 Dec 13 07:55 ATLAS.root_0
[2025-12-13 12:39:52] -rw-r--r--. 2 boinc boinc     15847 Dec 13 07:55 start_atlas.sh
[2025-12-13 12:39:52] -rw-r--r--. 2 boinc boinc    592383 Dec 13 07:55 input.tar.gz
[2025-12-13 12:39:52] -rw-------. 1 boinc boinc 147385937 Dec 13 12:35 HITS.pool.root.1
[2025-12-13 12:39:52] -rw-------. 1 boinc boinc   2723840 Dec 13 12:39 result.tar.gz
12:39:53 (20138): run_atlas exited; CPU time 57766.209135
12:39:53 (20138): called boinc_finish(0)

</stderr_txt>
]]>

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