Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:49:29 (24912): wrapper (7.7.26015): starting
01:49:29 (24912): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 01:49:29] Arguments: --nthreads 12
[2025-12-13 01:49:29] Threads: 12
[2025-12-13 01:49:29] Checking for CVMFS
[2025-12-13 01:49:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 01:49:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 01:49:30] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 01:49:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 01:49:30] 2.11.2.0 2925 311823 96500 153951 0 56 14795984 20275200 1 130560 1 137514791 99.966 18143465 15153 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 01:49:30] CVMFS is ok
[2025-12-13 01:49:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 01:49:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 01:49:30] Further information can be found at the LHC@home message board.
[2025-12-13 01:49:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 01:49:30] Checking for apptainer binary...
[2025-12-13 01:49:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 01:49:30] Running /usr/bin/apptainer --version
[2025-12-13 01:49:30] apptainer version 1.3.2-1.el7
[2025-12-13 01:49:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 01:49:31] c-205-9.aglt2.org
[2025-12-13 01:49:31] apptainer works
[2025-12-13 01:49:31] Set ATHENA_PROC_NUMBER=12
[2025-12-13 01:49:31] Set ATHENA_CORE_NUMBER=12
[2025-12-13 01:49:31] Starting ATLAS job with PandaID=6929038026
[2025-12-13 01:49:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 03:10:02]  *** The last 200 lines of the pilot log: ***
[2025-12-13 03:10:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-13 03:10:02]  replicas=None
[2025-12-13 03:10:02]  scope=mc23_13p6TeV
[2025-12-13 03:10:02]  status=None
[2025-12-13 03:10:02]  status_code=0
[2025-12-13 03:10:02]  storage_token=
[2025-12-13 03:10:02]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929038026/log.47886933._000775.job.log.tgz.1
[2025-12-13 03:10:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f7/a3/log.47886933._000775.job.log.tgz.1
[2025-12-13 03:10:02]  workdir=None
[2025-12-13 03:10:02] ]
[2025-12-13 03:10:02] 2025-12-13 08:08:48,559 | INFO     | transferring file log.47886933._000775.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929038026/log.47886933._000775.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-13 03:10:02] 2025-12-13 08:08:48,560 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929038026/log.47886933._000775.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886933._000775.job
[2025-12-13 03:10:02] 2025-12-13 08:08:48,582 | INFO     | adding to output.list: log.47886933._000775.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f7/a3/log.47886933._000775.job.log.tg
[2025-12-13 03:10:02] 2025-12-13 08:08:48,583 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-13 03:10:02] 2025-12-13 08:08:48,583 | INFO     | summary of transferred files:
[2025-12-13 03:10:02] 2025-12-13 08:08:48,583 | INFO     |  -- lfn=log.47886933._000775.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 03:10:02] 2025-12-13 08:08:48,584 | INFO     | stage-out finished correctly
[2025-12-13 03:10:02] 2025-12-13 08:08:49,066 | INFO     | time since job start (4741s) is within the limit (174528.0s)
[2025-12-13 03:10:02] 2025-12-13 08:08:50,516 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 03:10:02] 2025-12-13 08:08:51,099 | INFO     | time since job start (4743s) is within the limit (174528.0s)
[2025-12-13 03:10:02] 2025-12-13 08:08:51,639 | WARNING  | process 4262 can no longer be monitored (due to stat problems) - aborting
[2025-12-13 03:10:02] 2025-12-13 08:08:51,639 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929038026/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 03:10:02] 2025-12-13 08:08:51,672 | INFO     | job 6929038026 has state=finished
[2025-12-13 03:10:02] 2025-12-13 08:08:51,672 | INFO     | preparing for final server update for job 6929038026 in state='finished'
[2025-12-13 03:10:02] 2025-12-13 08:08:51,673 | INFO     | this job has now completed (state=finished)
[2025-12-13 03:10:02] 2025-12-13 08:08:51,673 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 03:10:02] 2025-12-13 08:08:51,673 | INFO     | log transfer has been attempted: DONE
[2025-12-13 03:10:02] 2025-12-13 08:08:51,674 | INFO     | job 6929038026 has finished - writing final server update
[2025-12-13 03:10:02] 2025-12-13 08:08:51,674 | INFO     | total number of processed events: 400 (read)
[2025-12-13 03:10:02] 2025-12-13 08:08:51,675 | INFO     | executing command: lscpu
[2025-12-13 03:10:02] 2025-12-13 08:08:51,700 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 03:10:02] 2025-12-13 08:08:51,743 | INFO     | number of running child processes to parent process 4262: 1
[2025-12-13 03:10:02] 2025-12-13 08:08:51,743 | INFO     | maximum number of monitored processes: 6
[2025-12-13 03:10:02] 2025-12-13 08:08:53,105 | INFO     | time since job start (4745s) is within the limit (174528.0s)
[2025-12-13 03:10:02] 2025-12-13 08:08:53,105 | INFO     | 4747s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-13 03:10:02] 2025-12-13 08:08:54,247 | INFO     | monitor loop #353: job 0:6929038026 is in state 'finished'
[2025-12-13 03:10:02] 2025-12-13 08:08:54,247 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 03:10:02] 2025-12-13 08:08:55,111 | INFO     | time since job start (4747s) is within the limit (174528.0s)
[2025-12-13 03:10:02] 2025-12-13 08:08:56,689 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 03:10:02] 2025-12-13 08:08:56,693 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-12-13 03:10:02] 2025-12-13 08:08:56,696 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929038026/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 03:10:02] 2025-12-13 08:08:56,697 | INFO     | extracted standard info from prmon json
[2025-12-13 03:10:02] 2025-12-13 08:08:56,697 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 03:10:02] 2025-12-13 08:08:56,697 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 03:10:02] 2025-12-13 08:08:56,697 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 03:10:02] 2025-12-13 08:08:56,698 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 03:10:02] 2025-12-13 08:08:56,700 | INFO     | fitting pss+swap vs Time
[2025-12-13 03:10:02] 2025-12-13 08:08:56,700 | INFO     | sum of square deviations: 110960220.0
[2025-12-13 03:10:02] 2025-12-13 08:08:56,700 | INFO     | sum of deviations: -3447474779.999998
[2025-12-13 03:10:02] 2025-12-13 08:08:56,700 | INFO     | mean x: 1765611057.0
[2025-12-13 03:10:02] 2025-12-13 08:08:56,700 | INFO     | mean y: 2680928.943661972
[2025-12-13 03:10:02] 2025-12-13 08:08:56,701 | INFO     | intersect: 54859273591.58113
[2025-12-13 03:10:02] 2025-12-13 08:08:56,701 | INFO     | chi2: 0.06876727693278312
[2025-12-13 03:10:02] 2025-12-13 08:08:56,701 | INFO     | current memory leak: -31.07 B/s (using 71 data points, chi2=0.07)
[2025-12-13 03:10:02] 2025-12-13 08:08:56,701 | INFO     | could have reported an average CPU frequency of 2056 MHz (6 samples)
[2025-12-13 03:10:02] 2025-12-13 08:08:56,701 | INFO     | ..............................
[2025-12-13 03:10:02] 2025-12-13 08:08:56,701 | INFO     | . Timing measurements:
[2025-12-13 03:10:02] 2025-12-13 08:08:56,702 | INFO     | . get job = 0 s
[2025-12-13 03:10:02] 2025-12-13 08:08:56,702 | INFO     | . initial setup = 2 s
[2025-12-13 03:10:02] 2025-12-13 08:08:56,702 | INFO     | . payload setup = 7 s
[2025-12-13 03:10:02] 2025-12-13 08:08:56,702 | INFO     | . stage-in = 0 s
[2025-12-13 03:10:02] 2025-12-13 08:08:56,702 | INFO     | . payload execution = 4712 s
[2025-12-13 03:10:02] 2025-12-13 08:08:56,702 | INFO     | . stage-out = 0 s
[2025-12-13 03:10:02] 2025-12-13 08:08:56,702 | INFO     | . log creation = 0 s
[2025-12-13 03:10:02] 2025-12-13 08:08:56,702 | INFO     | ..............................
[2025-12-13 03:10:02] 2025-12-13 08:08:56,782 | INFO     | 
[2025-12-13 03:10:02] 2025-12-13 08:08:56,783 | INFO     | job summary report
[2025-12-13 03:10:02] 2025-12-13 08:08:56,783 | INFO     | --------------------------------------------------
[2025-12-13 03:10:02] 2025-12-13 08:08:56,783 | INFO     | PanDA job id: 6929038026
[2025-12-13 03:10:02] 2025-12-13 08:08:56,783 | INFO     | task id: 47886933
[2025-12-13 03:10:02] 2025-12-13 08:08:56,783 | INFO     | errors: (none)
[2025-12-13 03:10:02] 2025-12-13 08:08:56,783 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 03:10:02] 2025-12-13 08:08:56,784 | INFO     | pilot state: finished 
[2025-12-13 03:10:02] 2025-12-13 08:08:56,784 | INFO     | transexitcode: 0
[2025-12-13 03:10:02] 2025-12-13 08:08:56,784 | INFO     | exeerrorcode: 0
[2025-12-13 03:10:02] 2025-12-13 08:08:56,784 | INFO     | exeerrordiag: 
[2025-12-13 03:10:02] 2025-12-13 08:08:56,784 | INFO     | exitcode: 0
[2025-12-13 03:10:02] 2025-12-13 08:08:56,784 | INFO     | exitmsg: OK
[2025-12-13 03:10:02] 2025-12-13 08:08:56,785 | INFO     | cpuconsumptiontime: 49721 s
[2025-12-13 03:10:02] 2025-12-13 08:08:56,785 | INFO     | nevents: 400
[2025-12-13 03:10:02] 2025-12-13 08:08:56,785 | INFO     | neventsw: 0
[2025-12-13 03:10:02] 2025-12-13 08:08:56,785 | INFO     | pid: 4262
[2025-12-13 03:10:02] 2025-12-13 08:08:56,785 | INFO     | pgrp: 4262
[2025-12-13 03:10:02] 2025-12-13 08:08:56,785 | INFO     | corecount: 12
[2025-12-13 03:10:02] 2025-12-13 08:08:56,785 | INFO     | event service: False
[2025-12-13 03:10:02] 2025-12-13 08:08:56,786 | INFO     | sizes: {0: 2283959, 5: 2284221, 11: 2284277, 4723: 2310451, 4724: 2319449, 4726: 2319505, 4732: 2319827}
[2025-12-13 03:10:02] 2025-12-13 08:08:56,786 | INFO     | --------------------------------------------------
[2025-12-13 03:10:02] 2025-12-13 08:08:56,786 | INFO     | 
[2025-12-13 03:10:02] 2025-12-13 08:08:56,786 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 03:10:02] 2025-12-13 08:08:56,812 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 03:10:02] 2025-12-13 08:08:56,812 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 03:10:02] 2025-12-13 08:08:56,812 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 03:10:02] 2025-12-13 08:08:56,812 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 03:10:02] 2025-12-13 08:08:56,812 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 03:10:02] 2025-12-13 08:08:56,813 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 03:10:02] 2025-12-13 08:08:56,813 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 03:10:02] 2025-12-13 08:08:56,813 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 03:10:02] 2025-12-13 08:08:56,813 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 03:10:02] 2025-12-13 08:08:56,813 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 03:10:02] 2025-12-13 08:08:56,814 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 03:10:02] 2025-12-13 08:08:56,814 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 03:10:02] 2025-12-13 08:08:56,814 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 03:10:02] 2025-12-13 08:08:56,814 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 03:10:02] 2025-12-13 08:08:56,814 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 03:10:02] 2025-12-13 08:08:56,814 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 03:10:02] 2025-12-13 08:08:56,815 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 03:10:02] 2025-12-13 08:08:56,815 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 03:10:02] 2025-12-13 08:08:56,815 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 03:10:02] 2025-12-13 08:08:56,815 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 03:10:02] 2025-12-13 08:08:56,815 | INFO     | job 6929038026 has completed (purged errors)
[2025-12-13 03:10:02] 2025-12-13 08:08:56,816 | INFO     | overall cleanup function is called
[2025-12-13 03:10:02] 2025-12-13 08:08:57,824 | INFO     | --- collectZombieJob: --- 10, [4262]
[2025-12-13 03:10:02] 2025-12-13 08:08:57,824 | INFO     | zombie collector waiting for pid 4262
[2025-12-13 03:10:02] 2025-12-13 08:08:57,824 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 03:10:02] 2025-12-13 08:08:57,824 | INFO     | collected zombie processes
[2025-12-13 03:10:02] 2025-12-13 08:08:57,825 | INFO     | will attempt to kill all subprocesses of pid=4262
[2025-12-13 03:10:02] 2025-12-13 08:08:57,916 | INFO     | process IDs to be killed: [4262] (in reverse order)
[2025-12-13 03:10:02] 2025-12-13 08:08:57,969 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 03:10:02] 2025-12-13 08:08:57,970 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 03:10:02] 2025-12-13 08:08:57,974 | INFO     | did not find any defunct processes belonging to 4262
[2025-12-13 03:10:02] 2025-12-13 08:08:57,977 | INFO     | did not find any defunct processes belonging to 4262
[2025-12-13 03:10:02] 2025-12-13 08:08:57,978 | INFO     | ready for new job
[2025-12-13 03:10:02] 2025-12-13 08:08:57,978 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 03:10:02] 2025-12-13 08:08:57,979 | INFO     | ***************************************
[2025-12-13 03:10:02] 2025-12-13 08:08:57,979 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 03:10:02] 2025-12-13 08:08:57,979 | INFO     | ***************************************
[2025-12-13 03:10:02] 2025-12-13 08:08:57,979 | INFO     | 
[2025-12-13 03:10:02] 2025-12-13 08:08:57,980 | INFO     | architecture information:
[2025-12-13 03:10:02] 2025-12-13 08:08:57,980 | INFO     | executing command: cat /etc/os-release
[2025-12-13 03:10:02] 2025-12-13 08:08:57,996 | INFO     | cat /etc/os-release:
[2025-12-13 03:10:02] NAME="CentOS Linux"
[2025-12-13 03:10:02] VERSION="7 (Core)"
[2025-12-13 03:10:02] ID="centos"
[2025-12-13 03:10:02] ID_LIKE="rhel fedora"
[2025-12-13 03:10:02] VERSION_ID="7"
[2025-12-13 03:10:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 03:10:02] ANSI_COLOR="0;31"
[2025-12-13 03:10:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 03:10:02] HOME_URL="https://www.centos.org/"
[2025-12-13 03:10:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 03:10:02] 
[2025-12-13 03:10:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 03:10:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 03:10:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 03:10:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 03:10:02] 
[2025-12-13 03:10:02] 2025-12-13 08:08:57,996 | INFO     | ***************************************
[2025-12-13 03:10:02] 2025-12-13 08:08:58,499 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 03:10:02] 2025-12-13 08:08:58,517 | INFO     | sufficient remaining disk space (29456596992 B)
[2025-12-13 03:10:02] 2025-12-13 08:08:58,517 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 03:10:02] 2025-12-13 08:08:58,518 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 03:10:02] 2025-12-13 08:08:58,518 | INFO     | update_server=False
[2025-12-13 03:10:02] 2025-12-13 08:08:58,518 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 03:10:02] 2025-12-13 08:08:58,518 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 03:10:02] 2025-12-13 08:08:58,518 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 03:10:02] 2025-12-13 08:08:58,519 | INFO     | aborting loop
[2025-12-13 03:10:02] 2025-12-13 08:08:58,836 | INFO     | all data control threads have been joined
[2025-12-13 03:10:02] 2025-12-13 08:08:59,180 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 03:10:02] 2025-12-13 08:08:59,252 | INFO     | all job control threads have been joined
[2025-12-13 03:10:02] 2025-12-13 08:08:59,523 | INFO     | [job] retrieve thread has finished
[2025-12-13 03:10:02] 2025-12-13 08:08:59,524 | INFO     | [job] queue monitor thread has finished
[2025-12-13 03:10:02] 2025-12-13 08:08:59,524 | INFO     | [job] job monitor thread has finished
[2025-12-13 03:10:02] 2025-12-13 08:08:59,754 | INFO     | all payload control threads have been joined
[2025-12-13 03:10:02] 2025-12-13 08:08:59,800 | INFO     | [job] validate thread has finished
[2025-12-13 03:10:02] 2025-12-13 08:08:59,842 | INFO     | [data] control thread has finished
[2025-12-13 03:10:02] 2025-12-13 08:09:00,090 | INFO     | [payload] validate_post thread has finished
[2025-12-13 03:10:02] 2025-12-13 08:09:00,141 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 03:10:02] 2025-12-13 08:09:00,142 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 03:10:02] 2025-12-13 08:09:00,174 | INFO     | [payload] failed_post thread has finished
[2025-12-13 03:10:02] 2025-12-13 08:09:00,257 | INFO     | [job] control thread has finished
[2025-12-13 03:10:02] 2025-12-13 08:09:00,760 | INFO     | [payload] control thread has finished
[2025-12-13 03:10:02] 2025-12-13 08:09:00,812 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 03:10:02] 2025-12-13 08:09:00,916 | INFO     | [data] copytool_in thread has finished
[2025-12-13 03:10:02] 2025-12-13 08:09:01,102 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 03:10:02] 2025-12-13 08:09:01,186 | INFO     | [data] copytool_out thread has finished
[2025-12-13 03:10:02] 2025-12-13 08:09:05,108 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 03:10:02] 2025-12-13 08:09:08,575 | INFO     | job.realtimelogging is not enabled
[2025-12-13 03:10:02] 2025-12-13 08:09:09,580 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 03:10:02] 2025-12-13 08:09:28,321 | INFO     | PID=28949 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 03:10:02] 2025-12-13 08:09:28,321 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 03:10:02] 2025-12-13 08:09:28,321 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 03:10:02] 2025-12-13 08:09:28,321 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 03:10:02] 2025-12-13 08:09:55,477 | INFO     | [monitor] cgroup control has ended
[2025-12-13 03:10:02] 2025-12-13 08:09:56,828 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140134033794880)>', '<ExcThread(monitor, started 140133240141568)>']
[2025-12-13 03:10:02] 2025-12-13 08:09:57,467 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 03:10:02] 2025-12-13 08:09:57,467 | INFO     | [monitor] control thread has ended
[2025-12-13 03:10:02] 2025-12-13 08:10:01,853 | INFO     | all workflow threads have been joined
[2025-12-13 03:10:02] 2025-12-13 08:10:01,853 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 03:10:02] 2025-12-13 08:10:01,854 | INFO     | traces error code: 0
[2025-12-13 03:10:02] 2025-12-13 08:10:01,854 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 03:10:02] 2025-12-13 08:10:01,941 [wrapper] ==== pilot stdout END ====
[2025-12-13 03:10:02] 2025-12-13 08:10:01,944 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 03:10:02] 2025-12-13 08:10:01,948 [wrapper] pilotpid: 28949
[2025-12-13 03:10:02] 2025-12-13 08:10:01,952 [wrapper] Pilot exit status: 0
[2025-12-13 03:10:02] 2025-12-13 08:10:01,968 [wrapper] pandaids: 6929038026
[2025-12-13 03:10:02] 2025-12-13 08:10:02,016 [wrapper] cleanup supervisor_pilot 30984 28950
[2025-12-13 03:10:02] 2025-12-13 08:10:02,020 [wrapper] Test setup, not cleaning
[2025-12-13 03:10:02] 2025-12-13 08:10:02,023 [wrapper] apfmon messages muted
[2025-12-13 03:10:02] 2025-12-13 08:10:02,027 [wrapper] ==== wrapper stdout END ====
[2025-12-13 03:10:02] 2025-12-13 08:10:02,030 [wrapper] ==== wrapper stderr END ====
[2025-12-13 03:10:02]  *** Error codes and diagnostics ***
[2025-12-13 03:10:02]     "exeErrorCode": 0,
[2025-12-13 03:10:02]     "exeErrorDiag": "",
[2025-12-13 03:10:02]     "pilotErrorCode": 0,
[2025-12-13 03:10:02]     "pilotErrorDiag": "",
[2025-12-13 03:10:02]  *** Listing of results directory ***
[2025-12-13 03:10:02] total 336980
[2025-12-13 03:10:02] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 01:26 pilot3.tar.gz
[2025-12-13 03:10:02] -rwx------ 1 boincer umatlas     36322 Dec 13 01:47 runpilot2-wrapper.sh
[2025-12-13 03:10:02] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 01:47 queuedata.json
[2025-12-13 03:10:02] -rw-r--r-- 1 boincer umatlas       100 Dec 13 01:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 03:10:02] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 01:49 run_atlas
[2025-12-13 03:10:02] -rw-r--r-- 1 boincer umatlas       105 Dec 13 01:49 job.xml
[2025-12-13 03:10:02] -rw-r--r-- 2 boincer umatlas 191788776 Dec 13 01:49 EVNT.47886929._000031.pool.root.1
[2025-12-13 03:10:02] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 01:49 start_atlas.sh
[2025-12-13 03:10:02] drwxrwx--x 2 boincer umatlas      4096 Dec 13 01:49 shared
[2025-12-13 03:10:02] -rw-r--r-- 2 boincer umatlas    592391 Dec 13 01:49 input.tar.gz
[2025-12-13 03:10:02] -rw-r--r-- 1 boincer umatlas         0 Dec 13 01:49 boinc_lockfile
[2025-12-13 03:10:02] -rw-r--r-- 1 boincer umatlas      2510 Dec 13 01:49 pandaJob.out
[2025-12-13 03:10:02] -rw------- 1 boincer umatlas        57 Dec 13 01:49 setup.sh.local
[2025-12-13 03:10:02] -rw------- 1 boincer umatlas    991736 Dec 13 01:49 agis_schedconf.cvmfs.json
[2025-12-13 03:10:02] -rw------- 1 boincer umatlas   1516240 Dec 13 01:49 agis_ddmendpoints.agis.ALL.json
[2025-12-13 03:10:02] drwx------ 5 boincer umatlas      4096 Dec 13 01:49 pilot3
[2025-12-13 03:10:02] -rw-r--r-- 1 boincer umatlas      5953 Dec 13 03:00 init_data.xml
[2025-12-13 03:10:02] -rw------- 1 boincer umatlas 147187762 Dec 13 03:08 HITS.47886933._000775.pool.root.1
[2025-12-13 03:10:02] -rw-r--r-- 1 boincer umatlas       529 Dec 13 03:08 boinc_task_state.xml
[2025-12-13 03:10:02] -rw------- 1 boincer umatlas      1045 Dec 13 03:08 memory_monitor_summary.json
[2025-12-13 03:10:02] -rw------- 1 boincer umatlas    402340 Dec 13 03:08 log.47886933._000775.job.log.tgz.1
[2025-12-13 03:10:02] -rw------- 1 boincer umatlas        95 Dec 13 03:08 pilot_heartbeat.json
[2025-12-13 03:10:02] -rw------- 1 boincer umatlas      7845 Dec 13 03:08 heartbeat.json
[2025-12-13 03:10:02] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 03:09 boinc_mmap_file
[2025-12-13 03:10:02] -rw-r--r-- 1 boincer umatlas        27 Dec 13 03:09 wrapper_checkpoint.txt
[2025-12-13 03:10:02] -rw------- 1 boincer umatlas      4818 Dec 13 03:10 pilotlog.txt
[2025-12-13 03:10:02] -rw------- 1 boincer umatlas    684263 Dec 13 03:10 log.47886933._000775.job.log.1
[2025-12-13 03:10:02] -rw------- 1 boincer umatlas       357 Dec 13 03:10 output.list
[2025-12-13 03:10:02] -rw-r--r-- 1 boincer umatlas       620 Dec 13 03:10 runtime_log
[2025-12-13 03:10:02] -rw------- 1 boincer umatlas   1105920 Dec 13 03:10 result.tar.gz
[2025-12-13 03:10:02] -rw-r--r-- 1 boincer umatlas      9339 Dec 13 03:10 runtime_log.err
[2025-12-13 03:10:02] -rw------- 1 boincer umatlas       658 Dec 13 03:10 3hPMDm2aYo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtuNKDmFjh3wm.diag
[2025-12-13 03:10:02] -rw-r--r-- 1 boincer umatlas     21916 Dec 13 03:10 stderr.txt
[2025-12-13 03:10:02] HITS file was successfully produced:
[2025-12-13 03:10:02] -rw------- 1 boincer umatlas 147187762 Dec 13 03:08 shared/HITS.pool.root.1
[2025-12-13 03:10:02]  *** Contents of shared directory: ***
[2025-12-13 03:10:02] total 332712
[2025-12-13 03:10:02] -rw-r--r-- 2 boincer umatlas 191788776 Dec 13 01:49 ATLAS.root_0
[2025-12-13 03:10:02] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 01:49 start_atlas.sh
[2025-12-13 03:10:02] -rw-r--r-- 2 boincer umatlas    592391 Dec 13 01:49 input.tar.gz
[2025-12-13 03:10:02] -rw------- 1 boincer umatlas 147187762 Dec 13 03:08 HITS.pool.root.1
[2025-12-13 03:10:02] -rw------- 1 boincer umatlas   1105920 Dec 13 03:10 result.tar.gz
03:10:03 (24912): run_atlas exited; CPU time 49713.034031
03:10:03 (24912): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN