Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
23:00:01 (802721): wrapper (7.7.26015): starting
23:00:01 (802721): wrapper: running run_atlas (--nthreads 3)
[2025-12-14 23:00:01] Arguments: --nthreads 3
[2025-12-14 23:00:01] Threads: 3
[2025-12-14 23:00:01] Checking for CVMFS
[2025-12-14 23:00:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 23:00:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 23:00:02] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 23:00:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 23:00:02] 2.12.7.0 4249 2376 58404 154008 1 57 5092131 6144000 911 130560 0 1538444 99.989 81739 6004 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.42:3128 1
[2025-12-14 23:00:02] CVMFS is ok
[2025-12-14 23:00:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 23:00:02] Checking for apptainer binary...
[2025-12-14 23:00:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 23:00:02] Running /usr/bin/apptainer --version
[2025-12-14 23:00:02] apptainer version 1.4.5
[2025-12-14 23:00:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 23:00:02] TS-P310
[2025-12-14 23:00:02] apptainer works
[2025-12-14 23:00:02] Set ATHENA_PROC_NUMBER=3
[2025-12-14 23:00:02] Set ATHENA_CORE_NUMBER=3
[2025-12-14 23:00:02] Starting ATLAS job with PandaID=6929021498
[2025-12-14 23:00:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 06:25:00]  *** The last 200 lines of the pilot log: ***
[2025-12-15 06:25:00] 2025-12-15 05:24:11,554 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-15 06:25:00] 2025-12-15 05:24:11,636 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-15 06:25:00] 2025-12-15 05:24:11,638 | INFO     | found 4 cores (4 cores per socket, 1 socket) HT, CPU MHz: 3699.998125
[2025-12-15 06:25:00] 2025-12-15 05:24:11,639 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6929021498/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 06:25:00] 2025-12-15 05:24:11,647 | INFO     | extracted standard info from prmon json
[2025-12-15 06:25:00] 2025-12-15 05:24:11,647 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 06:25:00] 2025-12-15 05:24:11,647 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 06:25:00] 2025-12-15 05:24:11,648 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 06:25:00] 2025-12-15 05:24:11,648 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 06:25:00] 2025-12-15 05:24:11,661 | INFO     | fitting pss+swap vs Time
[2025-12-15 06:25:00] 2025-12-15 05:24:11,662 | INFO     | sum of square deviations: 25877389378.0
[2025-12-15 06:25:00] 2025-12-15 05:24:11,671 | INFO     | sum of deviations: 15088486700.999996
[2025-12-15 06:25:00] 2025-12-15 05:24:11,671 | INFO     | mean x: 1765762933.0
[2025-12-15 06:25:00] 2025-12-15 05:24:11,671 | INFO     | mean y: 2308543.5697940504
[2025-12-15 06:25:00] 2025-12-15 05:24:11,671 | INFO     | intersect: -1027265581.6447021
[2025-12-15 06:25:00] 2025-12-15 05:24:11,672 | INFO     | chi2: 1.8887210001760613
[2025-12-15 06:25:00] 2025-12-15 05:24:11,673 | INFO     | sum of square deviations: 24999270588.0
[2025-12-15 06:25:00] 2025-12-15 05:24:11,682 | INFO     | sum of deviations: 39713304183.5
[2025-12-15 06:25:00] 2025-12-15 05:24:11,682 | INFO     | mean x: 1765762780.5
[2025-12-15 06:25:00] 2025-12-15 05:24:11,682 | INFO     | mean y: 2312780.1689814813
[2025-12-15 06:25:00] 2025-12-15 05:24:11,682 | INFO     | intersect: -2802740038.11444
[2025-12-15 06:25:00] 2025-12-15 05:24:11,683 | INFO     | chi2: 1.2276994245108612
[2025-12-15 06:25:00] 2025-12-15 05:24:11,683 | INFO     | current chi2=1.2276994245108612 (change=34.99837062242552 %)
[2025-12-15 06:25:00] 2025-12-15 05:24:11,684 | INFO     | sum of square deviations: 24141245198.0
[2025-12-15 06:25:00] 2025-12-15 05:24:11,692 | INFO     | sum of deviations: 39368382093.0
[2025-12-15 06:25:00] 2025-12-15 05:24:11,692 | INFO     | mean x: 1765762628.0
[2025-12-15 06:25:00] 2025-12-15 05:24:11,692 | INFO     | mean y: 2312719.173302108
[2025-12-15 06:25:00] 2025-12-15 05:24:11,692 | INFO     | intersect: -2877208086.588733
[2025-12-15 06:25:00] 2025-12-15 05:24:11,693 | INFO     | chi2: 1.2278215135676016
[2025-12-15 06:25:00] 2025-12-15 05:24:11,693 | INFO     | current chi2=1.2278215135676016 (change=-0.009944539705964647 %)
[2025-12-15 06:25:00] 2025-12-15 05:24:11,693 | INFO     | right removable region: 426
[2025-12-15 06:25:00] 2025-12-15 05:24:11,694 | INFO     | sum of square deviations: 24999270588.0
[2025-12-15 06:25:00] 2025-12-15 05:24:11,703 | INFO     | sum of deviations: -21897740045.0
[2025-12-15 06:25:00] 2025-12-15 05:24:11,703 | INFO     | mean x: 1765763085.5
[2025-12-15 06:25:00] 2025-12-15 05:24:11,703 | INFO     | mean y: 2314903.8981481483
[2025-12-15 06:25:00] 2025-12-15 05:24:11,703 | INFO     | intersect: 1549008872.0772212
[2025-12-15 06:25:00] 2025-12-15 05:24:11,704 | INFO     | chi2: 0.76793345790676
[2025-12-15 06:25:00] 2025-12-15 05:24:11,704 | INFO     | current chi2=0.76793345790676 (change=59.341085431084025 %)
[2025-12-15 06:25:00] 2025-12-15 05:24:11,705 | INFO     | sum of square deviations: 24141245198.0
[2025-12-15 06:25:00] 2025-12-15 05:24:11,713 | INFO     | sum of deviations: -1500460981.0
[2025-12-15 06:25:00] 2025-12-15 05:24:11,714 | INFO     | mean x: 1765763238.0
[2025-12-15 06:25:00] 2025-12-15 05:24:11,714 | INFO     | mean y: 2311278.168618267
[2025-12-15 06:25:00] 2025-12-15 05:24:11,714 | INFO     | intersect: 112059504.43338081
[2025-12-15 06:25:00] 2025-12-15 05:24:11,715 | INFO     | chi2: 0.6778671708557704
[2025-12-15 06:25:00] 2025-12-15 05:24:11,715 | INFO     | current chi2=0.6778671708557704 (change=11.728397314071081 %)
[2025-12-15 06:25:00] 2025-12-15 05:24:11,715 | INFO     | left removable region: 20
[2025-12-15 06:25:00] 2025-12-15 05:24:11,715 | INFO     | sum of square deviations: 20751710017.5
[2025-12-15 06:25:00] 2025-12-15 05:24:11,723 | INFO     | sum of deviations: 16266735586.500002
[2025-12-15 06:25:00] 2025-12-15 05:24:11,723 | INFO     | mean x: 1765763207.5
[2025-12-15 06:25:00] 2025-12-15 05:24:11,724 | INFO     | mean y: 2316738.327586207
[2025-12-15 06:25:00] 2025-12-15 05:24:11,724 | INFO     | intersect: -1381819951.1572921
[2025-12-15 06:25:00] 2025-12-15 05:24:11,724 | INFO     | chi2: 0.005128530020804451
[2025-12-15 06:25:00] 2025-12-15 05:24:11,725 | INFO     | current memory leak: 0.78 B/s (using 406 data points, chi2=0.01)
[2025-12-15 06:25:00] 2025-12-15 05:24:11,725 | INFO     | could have reported an average CPU frequency of 3700 MHz (18 samples)
[2025-12-15 06:25:00] 2025-12-15 05:24:11,725 | INFO     | ..............................
[2025-12-15 06:25:00] 2025-12-15 05:24:11,725 | INFO     | . Timing measurements:
[2025-12-15 06:25:00] 2025-12-15 05:24:11,725 | INFO     | . get job = 0 s
[2025-12-15 06:25:00] 2025-12-15 05:24:11,726 | INFO     | . initial setup = 1 s
[2025-12-15 06:25:00] 2025-12-15 05:24:11,726 | INFO     | . payload setup = 4 s
[2025-12-15 06:25:00] 2025-12-15 05:24:11,726 | INFO     | . stage-in = 0 s
[2025-12-15 06:25:00] 2025-12-15 05:24:11,726 | INFO     | . payload execution = 26613 s
[2025-12-15 06:25:00] 2025-12-15 05:24:11,726 | INFO     | . stage-out = 0 s
[2025-12-15 06:25:00] 2025-12-15 05:24:11,726 | INFO     | . log creation = 0 s
[2025-12-15 06:25:00] 2025-12-15 05:24:11,726 | INFO     | ..............................
[2025-12-15 06:25:00] 2025-12-15 05:24:11,863 | INFO     | 
[2025-12-15 06:25:00] 2025-12-15 05:24:11,863 | INFO     | job summary report
[2025-12-15 06:25:00] 2025-12-15 05:24:11,863 | INFO     | --------------------------------------------------
[2025-12-15 06:25:00] 2025-12-15 05:24:11,863 | INFO     | PanDA job id: 6929021498
[2025-12-15 06:25:00] 2025-12-15 05:24:11,863 | INFO     | task id: 47898782
[2025-12-15 06:25:00] 2025-12-15 05:24:11,863 | INFO     | errors: (none)
[2025-12-15 06:25:00] 2025-12-15 05:24:11,863 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 06:25:00] 2025-12-15 05:24:11,863 | INFO     | pilot state: finished 
[2025-12-15 06:25:00] 2025-12-15 05:24:11,864 | INFO     | transexitcode: 0
[2025-12-15 06:25:00] 2025-12-15 05:24:11,864 | INFO     | exeerrorcode: 0
[2025-12-15 06:25:00] 2025-12-15 05:24:11,864 | INFO     | exeerrordiag: 
[2025-12-15 06:25:00] 2025-12-15 05:24:11,864 | INFO     | exitcode: 0
[2025-12-15 06:25:00] 2025-12-15 05:24:11,864 | INFO     | exitmsg: OK
[2025-12-15 06:25:00] 2025-12-15 05:24:11,864 | INFO     | cpuconsumptiontime: 52392 s
[2025-12-15 06:25:00] 2025-12-15 05:24:11,864 | INFO     | nevents: 400
[2025-12-15 06:25:00] 2025-12-15 05:24:11,864 | INFO     | neventsw: 0
[2025-12-15 06:25:00] 2025-12-15 05:24:11,864 | INFO     | pid: 812849
[2025-12-15 06:25:00] 2025-12-15 05:24:11,864 | INFO     | pgrp: 812849
[2025-12-15 06:25:00] 2025-12-15 05:24:11,864 | INFO     | corecount: 3
[2025-12-15 06:25:00] 2025-12-15 05:24:11,864 | INFO     | event service: False
[2025-12-15 06:25:00] 2025-12-15 05:24:11,864 | INFO     | sizes: {0: 2283807, 1: 2284006, 4: 2284268, 12: 2284296, 26621: 2320865, 26623: 2330047, 26627: 2330185}
[2025-12-15 06:25:00] 2025-12-15 05:24:11,864 | INFO     | --------------------------------------------------
[2025-12-15 06:25:00] 2025-12-15 05:24:11,864 | INFO     | 
[2025-12-15 06:25:00] 2025-12-15 05:24:11,864 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-12-15 06:25:00] 2025-12-15 05:24:11,877 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 06:25:00] 2025-12-15 05:24:11,877 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 06:25:00] 2025-12-15 05:24:11,877 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 06:25:00] 2025-12-15 05:24:11,877 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 06:25:00] 2025-12-15 05:24:11,877 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 06:25:00] 2025-12-15 05:24:11,877 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 06:25:00] 2025-12-15 05:24:11,877 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 06:25:00] 2025-12-15 05:24:11,877 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 06:25:00] 2025-12-15 05:24:11,877 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 06:25:00] 2025-12-15 05:24:11,877 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 06:25:00] 2025-12-15 05:24:11,878 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 06:25:00] 2025-12-15 05:24:11,878 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 06:25:00] 2025-12-15 05:24:11,878 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 06:25:00] 2025-12-15 05:24:11,878 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 06:25:00] 2025-12-15 05:24:11,878 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 06:25:00] 2025-12-15 05:24:11,878 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 06:25:00] 2025-12-15 05:24:11,878 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 06:25:00] 2025-12-15 05:24:11,878 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 06:25:00] 2025-12-15 05:24:11,878 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 06:25:00] 2025-12-15 05:24:11,878 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 06:25:00] 2025-12-15 05:24:11,878 | INFO     | job 6929021498 has completed (purged errors)
[2025-12-15 06:25:00] 2025-12-15 05:24:11,878 | INFO     | overall cleanup function is called
[2025-12-15 06:25:00] 2025-12-15 05:24:12,883 | INFO     | --- collectZombieJob: --- 10, [812849]
[2025-12-15 06:25:00] 2025-12-15 05:24:12,884 | INFO     | zombie collector waiting for pid 812849
[2025-12-15 06:25:00] 2025-12-15 05:24:12,884 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 06:25:00] 2025-12-15 05:24:12,884 | INFO     | collected zombie processes
[2025-12-15 06:25:00] 2025-12-15 05:24:12,884 | INFO     | will attempt to kill all subprocesses of pid=812849
[2025-12-15 06:25:00] 2025-12-15 05:24:12,956 | INFO     | process IDs to be killed: [812849] (in reverse order)
[2025-12-15 06:25:00] 2025-12-15 05:24:12,983 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 06:25:00] 2025-12-15 05:24:12,984 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 06:25:00] 2025-12-15 05:24:12,985 | INFO     | did not find any defunct processes belonging to 812849
[2025-12-15 06:25:00] 2025-12-15 05:24:12,987 | INFO     | did not find any defunct processes belonging to 812849
[2025-12-15 06:25:00] 2025-12-15 05:24:12,987 | INFO     | ready for new job
[2025-12-15 06:25:00] 2025-12-15 05:24:12,988 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 06:25:00] 2025-12-15 05:24:12,989 | INFO     | ***************************************
[2025-12-15 06:25:00] 2025-12-15 05:24:12,990 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 06:25:00] 2025-12-15 05:24:12,990 | INFO     | ***************************************
[2025-12-15 06:25:00] 2025-12-15 05:24:12,990 | INFO     | 
[2025-12-15 06:25:00] 2025-12-15 05:24:12,990 | INFO     | architecture information:
[2025-12-15 06:25:00] 2025-12-15 05:24:12,990 | INFO     | executing command: cat /etc/os-release
[2025-12-15 06:25:00] 2025-12-15 05:24:13,001 | INFO     | cat /etc/os-release:
[2025-12-15 06:25:00] NAME="CentOS Linux"
[2025-12-15 06:25:00] VERSION="7 (Core)"
[2025-12-15 06:25:00] ID="centos"
[2025-12-15 06:25:00] ID_LIKE="rhel fedora"
[2025-12-15 06:25:00] VERSION_ID="7"
[2025-12-15 06:25:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 06:25:00] ANSI_COLOR="0;31"
[2025-12-15 06:25:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 06:25:00] HOME_URL="https://www.centos.org/"
[2025-12-15 06:25:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 06:25:00] 
[2025-12-15 06:25:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 06:25:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 06:25:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 06:25:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 06:25:00] 
[2025-12-15 06:25:00] 2025-12-15 05:24:13,001 | INFO     | ***************************************
[2025-12-15 06:25:00] 2025-12-15 05:24:13,507 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-12-15 06:25:00] 2025-12-15 05:24:13,517 | INFO     | sufficient remaining disk space (78818312192 B)
[2025-12-15 06:25:00] 2025-12-15 05:24:13,517 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 06:25:00] 2025-12-15 05:24:13,517 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 06:25:00] 2025-12-15 05:24:13,517 | INFO     | update_server=False
[2025-12-15 06:25:00] 2025-12-15 05:24:13,517 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 06:25:00] 2025-12-15 05:24:13,518 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 06:25:00] 2025-12-15 05:24:13,518 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 06:25:00] 2025-12-15 05:24:13,518 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 06:25:00] 2025-12-15 05:24:13,518 | INFO     | aborting loop
[2025-12-15 06:25:00] 2025-12-15 05:24:13,830 | INFO     | all payload control threads have been joined
[2025-12-15 06:25:00] 2025-12-15 05:24:13,839 | INFO     | all data control threads have been joined
[2025-12-15 06:25:00] 2025-12-15 05:24:14,520 | INFO     | [job] retrieve thread has finished
[2025-12-15 06:25:00] 2025-12-15 05:24:14,520 | INFO     | [job] queue monitor thread has finished
[2025-12-15 06:25:00] 2025-12-15 05:24:14,521 | INFO     | [job] job monitor thread has finished
[2025-12-15 06:25:00] 2025-12-15 05:24:14,532 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 06:25:00] 2025-12-15 05:24:14,594 | INFO     | [data] copytool_in thread has finished
[2025-12-15 06:25:00] 2025-12-15 05:24:14,631 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 06:25:00] 2025-12-15 05:24:14,788 | INFO     | [payload] validate_post thread has finished
[2025-12-15 06:25:00] 2025-12-15 05:24:14,834 | INFO     | [payload] control thread has finished
[2025-12-15 06:25:00] 2025-12-15 05:24:14,844 | INFO     | [data] control thread has finished
[2025-12-15 06:25:00] 2025-12-15 05:24:14,958 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 06:25:00] 2025-12-15 05:24:15,069 | INFO     | all job control threads have been joined
[2025-12-15 06:25:00] 2025-12-15 05:24:15,731 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 06:25:00] 2025-12-15 05:24:15,770 | INFO     | [job] validate thread has finished
[2025-12-15 06:25:00] 2025-12-15 05:24:15,982 | INFO     | [payload] failed_post thread has finished
[2025-12-15 06:25:00] 2025-12-15 05:24:16,074 | INFO     | [job] control thread has finished
[2025-12-15 06:25:00] 2025-12-15 05:24:16,963 | INFO     | [data] copytool_out thread has finished
[2025-12-15 06:25:00] 2025-12-15 05:24:17,520 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 06:25:00] 2025-12-15 05:24:24,025 | INFO     | job.realtimelogging is not enabled
[2025-12-15 06:25:00] 2025-12-15 05:24:25,030 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 06:25:00] 2025-12-15 05:24:44,529 | INFO     | PID=806427 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-15 06:25:00] 2025-12-15 05:24:44,530 | INFO     | .. there are 2 such processes running
[2025-12-15 06:25:00] 2025-12-15 05:24:44,530 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 06:25:00] 2025-12-15 05:24:44,530 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 06:25:00] 2025-12-15 05:24:44,530 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 06:25:00] 2025-12-15 05:24:54,320 | INFO     | [monitor] cgroup control has ended
[2025-12-15 06:25:00] 2025-12-15 05:24:55,277 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140251759675200)>', '<ExcThread(monitor, started 140251234277120)>']
[2025-12-15 06:25:00] 2025-12-15 05:24:55,570 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 06:25:00] 2025-12-15 05:24:55,570 | INFO     | [monitor] control thread has ended
[2025-12-15 06:25:00] 2025-12-15 05:25:00,307 | INFO     | all workflow threads have been joined
[2025-12-15 06:25:00] 2025-12-15 05:25:00,307 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 06:25:00] 2025-12-15 05:25:00,307 | INFO     | traces error code: 0
[2025-12-15 06:25:00] 2025-12-15 05:25:00,307 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 06:25:00] 2025-12-15 05:25:00,385 [wrapper] ==== pilot stdout END ====
[2025-12-15 06:25:00] 2025-12-15 05:25:00,387 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 06:25:00] 2025-12-15 05:25:00,389 [wrapper] pilotpid: 806427
[2025-12-15 06:25:00] 2025-12-15 05:25:00,391 [wrapper] Pilot exit status: 0
[2025-12-15 06:25:00] 2025-12-15 05:25:00,400 [wrapper] pandaids: 6929021498
[2025-12-15 06:25:00] 2025-12-15 05:25:00,419 [wrapper] cleanup supervisor_pilot  940331 806428
[2025-12-15 06:25:00] 2025-12-15 05:25:00,421 [wrapper] Test setup, not cleaning
[2025-12-15 06:25:00] 2025-12-15 05:25:00,422 [wrapper] apfmon messages muted
[2025-12-15 06:25:00] 2025-12-15 05:25:00,424 [wrapper] ==== wrapper stdout END ====
[2025-12-15 06:25:00] 2025-12-15 05:25:00,426 [wrapper] ==== wrapper stderr END ====
[2025-12-15 06:25:00]  *** Error codes and diagnostics ***
[2025-12-15 06:25:00]     "exeErrorCode": 0,
[2025-12-15 06:25:00]     "exeErrorDiag": "",
[2025-12-15 06:25:00]     "pilotErrorCode": 0,
[2025-12-15 06:25:00]     "pilotErrorDiag": "",
[2025-12-15 06:25:00]  *** Listing of results directory ***
[2025-12-15 06:25:00] insgesamt 409176
[2025-12-15 06:25:00] -rw-r--r-- 1 boinc boinc    579449 13. Dez 06:46 pilot3.tar.gz
[2025-12-15 06:25:00] -rw-r--r-- 1 boinc boinc      5112 13. Dez 07:02 queuedata.json
[2025-12-15 06:25:00] -rwx------ 1 boinc boinc     36322 13. Dez 07:03 runpilot2-wrapper.sh
[2025-12-15 06:25:00] -rw-r--r-- 1 boinc boinc       100 14. Dez 22:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 06:25:00] -rwxr-xr-x 1 boinc boinc      7986 14. Dez 22:59 run_atlas
[2025-12-15 06:25:00] -rw-r--r-- 1 boinc boinc       105 14. Dez 22:59 job.xml
[2025-12-15 06:25:00] -rw-r--r-- 2 boinc boinc 216341763 14. Dez 23:00 EVNT.47898779._000061.pool.root.1
[2025-12-15 06:25:00] -rw-r--r-- 1 boinc boinc      6743 14. Dez 23:00 init_data.xml
[2025-12-15 06:25:00] drwxrwx--x 2 boinc boinc      4096 14. Dez 23:00 shared
[2025-12-15 06:25:00] -rw-r--r-- 2 boinc boinc    592386 14. Dez 23:00 input.tar.gz
[2025-12-15 06:25:00] -rw-r--r-- 2 boinc boinc     15847 14. Dez 23:00 start_atlas.sh
[2025-12-15 06:25:00] -rw-r--r-- 1 boinc boinc         0 14. Dez 23:00 boinc_lockfile
[2025-12-15 06:25:00] -rw-r--r-- 1 boinc boinc      2521 14. Dez 23:00 pandaJob.out
[2025-12-15 06:25:00] -rw------- 1 boinc boinc        52 14. Dez 23:00 setup.sh.local
[2025-12-15 06:25:00] -rw------- 1 boinc boinc    991024 14. Dez 23:00 agis_schedconf.cvmfs.json
[2025-12-15 06:25:00] drwx------ 5 boinc boinc      4096 14. Dez 23:00 pilot3
[2025-12-15 06:25:00] -rw------- 1 boinc boinc 190115019 15. Dez 06:23 HITS.47898782._001008.pool.root.1
[2025-12-15 06:25:00] -rw-r--r-- 1 boinc boinc       530 15. Dez 06:23 boinc_task_state.xml
[2025-12-15 06:25:00] -rw------- 1 boinc boinc      1017 15. Dez 06:24 memory_monitor_summary.json
[2025-12-15 06:25:00] -rw------- 1 boinc boinc        95 15. Dez 06:24 pilot_heartbeat.json
[2025-12-15 06:25:00] -rw------- 1 boinc boinc   1516240 15. Dez 06:24 agis_ddmendpoints.agis.ALL.json
[2025-12-15 06:25:00] -rw------- 1 boinc boinc    547588 15. Dez 06:24 log.47898782._001008.job.log.tgz.1
[2025-12-15 06:25:00] -rw------- 1 boinc boinc      7760 15. Dez 06:24 heartbeat.json
[2025-12-15 06:25:00] -rw-r--r-- 1 boinc boinc        28 15. Dez 06:24 wrapper_checkpoint.txt
[2025-12-15 06:25:00] -rw-r--r-- 1 boinc boinc      8192 15. Dez 06:24 boinc_mmap_file
[2025-12-15 06:25:00] -rw------- 1 boinc boinc      4894 15. Dez 06:25 pilotlog.txt
[2025-12-15 06:25:00] -rw------- 1 boinc boinc   3767457 15. Dez 06:25 log.47898782._001008.job.log.1
[2025-12-15 06:25:00] -rw------- 1 boinc boinc       357 15. Dez 06:25 output.list
[2025-12-15 06:25:00] -rw-r--r-- 1 boinc boinc       620 15. Dez 06:25 runtime_log
[2025-12-15 06:25:00] -rw------- 1 boinc boinc   4331520 15. Dez 06:25 result.tar.gz
[2025-12-15 06:25:00] -rw-r--r-- 1 boinc boinc      9283 15. Dez 06:25 runtime_log.err
[2025-12-15 06:25:00] -rw------- 1 boinc boinc       649 15. Dez 06:25 4eLKDmUuXo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmttRKDmAGe9om.diag
[2025-12-15 06:25:00] -rw-r--r-- 1 boinc boinc     20728 15. Dez 06:25 stderr.txt
[2025-12-15 06:25:00] HITS file was successfully produced:
[2025-12-15 06:25:00] -rw------- 1 boinc boinc 190115019 15. Dez 06:23 shared/HITS.pool.root.1
[2025-12-15 06:25:00]  *** Contents of shared directory: ***
[2025-12-15 06:25:00] insgesamt 401764
[2025-12-15 06:25:00] -rw-r--r-- 2 boinc boinc 216341763 14. Dez 23:00 ATLAS.root_0
[2025-12-15 06:25:00] -rw-r--r-- 2 boinc boinc    592386 14. Dez 23:00 input.tar.gz
[2025-12-15 06:25:00] -rw-r--r-- 2 boinc boinc     15847 14. Dez 23:00 start_atlas.sh
[2025-12-15 06:25:00] -rw------- 1 boinc boinc 190115019 15. Dez 06:23 HITS.pool.root.1
[2025-12-15 06:25:00] -rw------- 1 boinc boinc   4331520 15. Dez 06:25 result.tar.gz
06:25:02 (802721): run_atlas exited; CPU time 52706.936713
06:25:02 (802721): called boinc_finish(0)

</stderr_txt>
]]>

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