Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:00:30 (24015): wrapper (7.7.26015): starting
01:00:30 (24015): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 01:00:30] Arguments: --nthreads 8
[2025-12-13 01:00:30] Threads: 8
[2025-12-13 01:00:30] Checking for CVMFS
[2025-12-13 01:00:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 01:00:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 01:00:30] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 01:00:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 01:00:30] 2.11.2.0 2908 193953 87616 153950 2 59 14173176 20275200 1 130560 2 74273680 99.938 9038693 26656 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 01:00:30] CVMFS is ok
[2025-12-13 01:00:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 01:00:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 01:00:30] Further information can be found at the LHC@home message board.
[2025-12-13 01:00:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 01:00:30] Checking for apptainer binary...
[2025-12-13 01:00:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 01:00:30] Running /usr/bin/apptainer --version
[2025-12-13 01:00:30] apptainer version 1.3.2-1.el7
[2025-12-13 01:00:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 01:00:32] c-115-5.aglt2.org
[2025-12-13 01:00:32] apptainer works
[2025-12-13 01:00:32] Set ATHENA_PROC_NUMBER=8
[2025-12-13 01:00:32] Set ATHENA_CORE_NUMBER=8
[2025-12-13 01:00:32] Starting ATLAS job with PandaID=6929021940
[2025-12-13 01:00:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 03:46:16]  *** The last 200 lines of the pilot log: ***
[2025-12-13 03:46:16] 2025-12-13 08:45:43,196 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929021940/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 03:46:16] 2025-12-13 08:45:43,197 | INFO     | extracted standard info from prmon json
[2025-12-13 03:46:16] 2025-12-13 08:45:43,197 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 03:46:16] 2025-12-13 08:45:43,197 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 03:46:16] 2025-12-13 08:45:43,198 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 03:46:16] 2025-12-13 08:45:43,198 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 03:46:16] 2025-12-13 08:45:43,202 | INFO     | fitting pss+swap vs Time
[2025-12-13 03:46:16] 2025-12-13 08:45:43,202 | INFO     | sum of square deviations: 1318277740.5
[2025-12-13 03:46:16] 2025-12-13 08:45:43,204 | INFO     | sum of deviations: 12097471931.999996
[2025-12-13 03:46:16] 2025-12-13 08:45:43,204 | INFO     | mean x: 1765610591.5
[2025-12-13 03:46:16] 2025-12-13 08:45:43,204 | INFO     | mean y: 2504868.901234568
[2025-12-13 03:46:16] 2025-12-13 08:45:43,204 | INFO     | intersect: -16200017495.932068
[2025-12-13 03:46:16] 2025-12-13 08:45:43,204 | INFO     | chi2: 1.3889697625589108
[2025-12-13 03:46:16] 2025-12-13 08:45:43,205 | INFO     | sum of square deviations: 1199940638.0
[2025-12-13 03:46:16] 2025-12-13 08:45:43,206 | INFO     | sum of deviations: 11602279788.000002
[2025-12-13 03:46:16] 2025-12-13 08:45:43,206 | INFO     | mean x: 1765610439.0
[2025-12-13 03:46:16] 2025-12-13 08:45:43,206 | INFO     | sufficient remaining disk space (18571329536 B)
[2025-12-13 03:46:16] 2025-12-13 08:45:43,207 | INFO     | mean y: 2504233.331210191
[2025-12-13 03:46:16] 2025-12-13 08:45:43,207 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-13 03:46:16] 2025-12-13 08:45:43,207 | INFO     | intersect: -17069262203.411062
[2025-12-13 03:46:16] 2025-12-13 08:45:43,208 | INFO     | chi2: 1.3901068725806685
[2025-12-13 03:46:16] 2025-12-13 08:45:43,208 | INFO     | current chi2=1.3901068725806685 (change=-0.08186715452053761 %)
[2025-12-13 03:46:16] 2025-12-13 08:45:43,208 | INFO     | right removable region: 156
[2025-12-13 03:46:16] 2025-12-13 08:45:43,209 | INFO     | sum of square deviations: 1199940638.0
[2025-12-13 03:46:16] 2025-12-13 08:45:43,210 | INFO     | sum of deviations: -9512349150.0
[2025-12-13 03:46:16] 2025-12-13 08:45:43,210 | INFO     | mean x: 1765610744.0
[2025-12-13 03:46:16] 2025-12-13 08:45:43,210 | INFO     | mean y: 2532273.1656050957
[2025-12-13 03:46:16] 2025-12-13 08:45:43,210 | INFO     | intersect: 13999146212.262207
[2025-12-13 03:46:16] 2025-12-13 08:45:43,210 | INFO     | chi2: 0.09215077841218747
[2025-12-13 03:46:16] 2025-12-13 08:45:43,211 | INFO     | current chi2=0.09215077841218747 (change=93.36553027314163 %)
[2025-12-13 03:46:16] 2025-12-13 08:45:43,211 | INFO     | sum of square deviations: 1088905998.0
[2025-12-13 03:46:16] 2025-12-13 08:45:43,212 | INFO     | sum of deviations: -5311340211.000001
[2025-12-13 03:46:16] 2025-12-13 08:45:43,212 | INFO     | mean x: 1765610896.5
[2025-12-13 03:46:16] 2025-12-13 08:45:43,212 | INFO     | mean y: 2526480.802631579
[2025-12-13 03:46:16] 2025-12-13 08:45:43,212 | INFO     | intersect: 8614619874.341099
[2025-12-13 03:46:16] 2025-12-13 08:45:43,213 | INFO     | chi2: 0.07497281808749481
[2025-12-13 03:46:16] 2025-12-13 08:45:43,213 | INFO     | current chi2=0.07497281808749481 (change=18.641145110957382 %)
[2025-12-13 03:46:16] 2025-12-13 08:45:43,213 | INFO     | left removable region: 20
[2025-12-13 03:46:16] 2025-12-13 08:45:43,213 | INFO     | sum of square deviations: 779958810.0
[2025-12-13 03:46:16] 2025-12-13 08:45:43,214 | INFO     | sum of deviations: 3018177215.0
[2025-12-13 03:46:16] 2025-12-13 08:45:43,214 | INFO     | mean x: 1765611018.5
[2025-12-13 03:46:16] 2025-12-13 08:45:43,214 | INFO     | mean y: 2513141.338235294
[2025-12-13 03:46:16] 2025-12-13 08:45:43,215 | INFO     | intersect: -6829805281.463661
[2025-12-13 03:46:16] 2025-12-13 08:45:43,215 | INFO     | chi2: 0.0008355487222742921
[2025-12-13 03:46:16] 2025-12-13 08:45:43,215 | INFO     | current memory leak: 3.87 B/s (using 136 data points, chi2=0.00)
[2025-12-13 03:46:16] 2025-12-13 08:45:43,215 | INFO     | could have reported an average CPU frequency of 2187 MHz (9 samples)
[2025-12-13 03:46:16] 2025-12-13 08:45:43,216 | INFO     | ..............................
[2025-12-13 03:46:16] 2025-12-13 08:45:43,216 | INFO     | . Timing measurements:
[2025-12-13 03:46:16] 2025-12-13 08:45:43,216 | INFO     | . get job = 0 s
[2025-12-13 03:46:16] 2025-12-13 08:45:43,216 | INFO     | . initial setup = 2 s
[2025-12-13 03:46:16] 2025-12-13 08:45:43,216 | INFO     | . payload setup = 8 s
[2025-12-13 03:46:16] 2025-12-13 08:45:43,216 | INFO     | . stage-in = 0 s
[2025-12-13 03:46:16] 2025-12-13 08:45:43,217 | INFO     | . payload execution = 9853 s
[2025-12-13 03:46:16] 2025-12-13 08:45:43,217 | INFO     | . stage-out = 0 s
[2025-12-13 03:46:16] 2025-12-13 08:45:43,217 | INFO     | . log creation = 0 s
[2025-12-13 03:46:16] 2025-12-13 08:45:43,217 | INFO     | ..............................
[2025-12-13 03:46:16] 2025-12-13 08:45:43,299 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6929021940: 3150549 B (within 2768240640 B limit)
[2025-12-13 03:46:16] 2025-12-13 08:45:43,300 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6929021940/HITS.47898782._001201.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-13 03:46:16] 2025-12-13 08:45:43,300 | INFO     | total size of present files: 0 B (workdir size: 3150549 B)
[2025-12-13 03:46:16] 2025-12-13 08:45:43,300 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6929021940/HITS.47898782._001201.pool.root.1 since it does not exist
[2025-12-13 03:46:16] 2025-12-13 08:45:43,382 | INFO     | number of running child processes to parent process 1808: 1
[2025-12-13 03:46:16] 2025-12-13 08:45:43,382 | INFO     | maximum number of monitored processes: 6
[2025-12-13 03:46:16] 2025-12-13 08:45:43,383 | INFO     | aborting job monitoring since job object (job id=6929021940) has expired
[2025-12-13 03:46:16] 2025-12-13 08:45:43,697 | INFO     | 
[2025-12-13 03:46:16] 2025-12-13 08:45:43,698 | INFO     | job summary report
[2025-12-13 03:46:16] 2025-12-13 08:45:43,698 | INFO     | --------------------------------------------------
[2025-12-13 03:46:16] 2025-12-13 08:45:43,698 | INFO     | PanDA job id: 6929021940
[2025-12-13 03:46:16] 2025-12-13 08:45:43,698 | INFO     | task id: 47898782
[2025-12-13 03:46:16] 2025-12-13 08:45:43,698 | INFO     | errors: (none)
[2025-12-13 03:46:16] 2025-12-13 08:45:43,699 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 03:46:16] 2025-12-13 08:45:43,699 | INFO     | pilot state: finished 
[2025-12-13 03:46:16] 2025-12-13 08:45:43,699 | INFO     | transexitcode: 0
[2025-12-13 03:46:16] 2025-12-13 08:45:43,699 | INFO     | exeerrorcode: 0
[2025-12-13 03:46:16] 2025-12-13 08:45:43,699 | INFO     | exeerrordiag: 
[2025-12-13 03:46:16] 2025-12-13 08:45:43,699 | INFO     | exitcode: 0
[2025-12-13 03:46:16] 2025-12-13 08:45:43,700 | INFO     | exitmsg: OK
[2025-12-13 03:46:16] 2025-12-13 08:45:43,700 | INFO     | cpuconsumptiontime: 73615 s
[2025-12-13 03:46:16] 2025-12-13 08:45:43,700 | INFO     | nevents: 400
[2025-12-13 03:46:16] 2025-12-13 08:45:43,700 | INFO     | neventsw: 0
[2025-12-13 03:46:16] 2025-12-13 08:45:43,700 | INFO     | pid: 1808
[2025-12-13 03:46:16] 2025-12-13 08:45:43,700 | INFO     | pgrp: 1808
[2025-12-13 03:46:16] 2025-12-13 08:45:43,701 | INFO     | corecount: 8
[2025-12-13 03:46:16] 2025-12-13 08:45:43,701 | INFO     | event service: False
[2025-12-13 03:46:16] 2025-12-13 08:45:43,701 | INFO     | sizes: {0: 2283801, 1: 2284000, 7: 2284262, 12: 2284290, 9865: 2312791, 9867: 2321973, 9876: 2322175}
[2025-12-13 03:46:16] 2025-12-13 08:45:43,701 | INFO     | --------------------------------------------------
[2025-12-13 03:46:16] 2025-12-13 08:45:43,701 | INFO     | 
[2025-12-13 03:46:16] 2025-12-13 08:45:43,701 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 03:46:16] 2025-12-13 08:45:43,730 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 03:46:16] 2025-12-13 08:45:43,731 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 03:46:16] 2025-12-13 08:45:43,731 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 03:46:16] 2025-12-13 08:45:43,731 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 03:46:16] 2025-12-13 08:45:43,732 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 03:46:16] 2025-12-13 08:45:43,732 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 03:46:16] 2025-12-13 08:45:43,732 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 03:46:16] 2025-12-13 08:45:43,732 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 03:46:16] 2025-12-13 08:45:43,732 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 03:46:16] 2025-12-13 08:45:43,733 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 03:46:16] 2025-12-13 08:45:43,733 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 03:46:16] 2025-12-13 08:45:43,733 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 03:46:16] 2025-12-13 08:45:43,733 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 03:46:16] 2025-12-13 08:45:43,734 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 03:46:16] 2025-12-13 08:45:43,734 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 03:46:16] 2025-12-13 08:45:43,734 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 03:46:16] 2025-12-13 08:45:43,734 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 03:46:16] 2025-12-13 08:45:43,734 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 03:46:16] 2025-12-13 08:45:43,735 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 03:46:16] 2025-12-13 08:45:43,735 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 03:46:16] 2025-12-13 08:45:43,735 | INFO     | job 6929021940 has completed (purged errors)
[2025-12-13 03:46:16] 2025-12-13 08:45:43,736 | INFO     | overall cleanup function is called
[2025-12-13 03:46:16] 2025-12-13 08:45:44,741 | INFO     | --- collectZombieJob: --- 10, [1808]
[2025-12-13 03:46:16] 2025-12-13 08:45:44,741 | INFO     | zombie collector waiting for pid 1808
[2025-12-13 03:46:16] 2025-12-13 08:45:44,741 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 03:46:16] 2025-12-13 08:45:44,741 | INFO     | collected zombie processes
[2025-12-13 03:46:16] 2025-12-13 08:45:44,741 | INFO     | will attempt to kill all subprocesses of pid=1808
[2025-12-13 03:46:16] 2025-12-13 08:45:44,827 | INFO     | process IDs to be killed: [1808] (in reverse order)
[2025-12-13 03:46:16] 2025-12-13 08:45:44,885 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 03:46:16] 2025-12-13 08:45:44,885 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 03:46:16] 2025-12-13 08:45:44,890 | INFO     | did not find any defunct processes belonging to 1808
[2025-12-13 03:46:16] 2025-12-13 08:45:44,893 | INFO     | did not find any defunct processes belonging to 1808
[2025-12-13 03:46:16] 2025-12-13 08:45:44,893 | INFO     | ready for new job
[2025-12-13 03:46:16] 2025-12-13 08:45:44,893 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 03:46:16] 2025-12-13 08:45:44,895 | INFO     | ***************************************
[2025-12-13 03:46:16] 2025-12-13 08:45:44,895 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 03:46:16] 2025-12-13 08:45:44,895 | INFO     | ***************************************
[2025-12-13 03:46:16] 2025-12-13 08:45:44,895 | INFO     | 
[2025-12-13 03:46:16] 2025-12-13 08:45:44,896 | INFO     | architecture information:
[2025-12-13 03:46:16] 2025-12-13 08:45:44,896 | INFO     | executing command: cat /etc/os-release
[2025-12-13 03:46:16] 2025-12-13 08:45:44,915 | INFO     | cat /etc/os-release:
[2025-12-13 03:46:16] NAME="CentOS Linux"
[2025-12-13 03:46:16] VERSION="7 (Core)"
[2025-12-13 03:46:16] ID="centos"
[2025-12-13 03:46:16] ID_LIKE="rhel fedora"
[2025-12-13 03:46:16] VERSION_ID="7"
[2025-12-13 03:46:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 03:46:16] ANSI_COLOR="0;31"
[2025-12-13 03:46:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 03:46:16] HOME_URL="https://www.centos.org/"
[2025-12-13 03:46:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 03:46:16] 
[2025-12-13 03:46:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 03:46:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 03:46:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 03:46:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 03:46:16] 
[2025-12-13 03:46:16] 2025-12-13 08:45:44,916 | INFO     | ***************************************
[2025-12-13 03:46:16] 2025-12-13 08:45:45,419 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 03:46:16] 2025-12-13 08:45:45,438 | INFO     | sufficient remaining disk space (18575523840 B)
[2025-12-13 03:46:16] 2025-12-13 08:45:45,439 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 03:46:16] 2025-12-13 08:45:45,439 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 03:46:16] 2025-12-13 08:45:45,439 | INFO     | update_server=False
[2025-12-13 03:46:16] 2025-12-13 08:45:45,439 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 03:46:16] 2025-12-13 08:45:45,440 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 03:46:16] 2025-12-13 08:45:45,440 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 03:46:16] 2025-12-13 08:45:45,514 | INFO     | all job control threads have been joined
[2025-12-13 03:46:16] 2025-12-13 08:45:45,802 | INFO     | all data control threads have been joined
[2025-12-13 03:46:16] 2025-12-13 08:45:45,885 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-13 03:46:16] 2025-12-13 08:45:45,886 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-13 03:46:16] 2025-12-13 08:45:45,886 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 03:46:16] 2025-12-13 08:45:45,886 | INFO     | will abort loop
[2025-12-13 03:46:16] 2025-12-13 08:45:45,893 | INFO     | all payload control threads have been joined
[2025-12-13 03:46:16] 2025-12-13 08:45:46,445 | INFO     | [job] retrieve thread has finished
[2025-12-13 03:46:16] 2025-12-13 08:45:46,520 | INFO     | [job] control thread has finished
[2025-12-13 03:46:16] 2025-12-13 08:45:46,662 | INFO     | [data] copytool_in thread has finished
[2025-12-13 03:46:16] 2025-12-13 08:45:46,685 | INFO     | [job] validate thread has finished
[2025-12-13 03:46:16] 2025-12-13 08:45:46,808 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 03:46:16] 2025-12-13 08:45:46,808 | INFO     | [data] control thread has finished
[2025-12-13 03:46:16] 2025-12-13 08:45:46,866 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 03:46:16] 2025-12-13 08:45:46,892 | INFO     | [job] job monitor thread has finished
[2025-12-13 03:46:16] 2025-12-13 08:45:46,898 | INFO     | [payload] control thread has finished
[2025-12-13 03:46:16] 2025-12-13 08:45:47,060 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 03:46:16] 2025-12-13 08:45:47,240 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 03:46:16] 2025-12-13 08:45:47,446 | INFO     | [data] copytool_out thread has finished
[2025-12-13 03:46:16] 2025-12-13 08:45:47,779 | INFO     | [payload] validate_post thread has finished
[2025-12-13 03:46:16] 2025-12-13 08:45:47,840 | INFO     | [payload] failed_post thread has finished
[2025-12-13 03:46:16] 2025-12-13 08:45:48,307 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 03:46:16] 2025-12-13 08:45:48,466 [wrapper] supervise_pilot (15 min periods counter: 12)
[2025-12-13 03:46:16] 2025-12-13 08:45:49,313 | INFO     | [job] queue monitor thread has finished
[2025-12-13 03:46:16] 2025-12-13 08:45:49,446 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 03:46:16] 2025-12-13 08:46:05,466 | INFO     | [monitor] cgroup control has ended
[2025-12-13 03:46:16] 2025-12-13 08:46:06,814 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140223295215424)>', '<ExcThread(monitor, started 140222855620352)>']
[2025-12-13 03:46:16] 2025-12-13 08:46:11,837 | INFO     | all workflow threads have been joined
[2025-12-13 03:46:16] 2025-12-13 08:46:11,838 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 03:46:16] 2025-12-13 08:46:11,838 | INFO     | traces error code: 0
[2025-12-13 03:46:16] 2025-12-13 08:46:11,838 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 03:46:16] 2025-12-13 08:46:15,715 | INFO     | PID=27695 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 03:46:16] 2025-12-13 08:46:15,716 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 03:46:16] 2025-12-13 08:46:15,716 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 03:46:16] 2025-12-13 08:46:15,716 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 03:46:16] 2025-12-13 08:46:15,716 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 03:46:16] 2025-12-13 08:46:15,716 | INFO     | [monitor] control thread has ended
[2025-12-13 03:46:16] 2025-12-13 08:46:15,814 [wrapper] ==== pilot stdout END ====
[2025-12-13 03:46:16] 2025-12-13 08:46:15,819 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 03:46:16] 2025-12-13 08:46:15,823 [wrapper] pilotpid: 27695
[2025-12-13 03:46:16] 2025-12-13 08:46:15,828 [wrapper] Pilot exit status: 0
[2025-12-13 03:46:16] 2025-12-13 08:46:15,848 [wrapper] pandaids: 6929021940
[2025-12-13 03:46:16] 2025-12-13 08:46:15,892 [wrapper] cleanup supervisor_pilot 10858 27696
[2025-12-13 03:46:16] 2025-12-13 08:46:15,896 [wrapper] Test setup, not cleaning
[2025-12-13 03:46:16] 2025-12-13 08:46:15,901 [wrapper] apfmon messages muted
[2025-12-13 03:46:16] 2025-12-13 08:46:15,905 [wrapper] ==== wrapper stdout END ====
[2025-12-13 03:46:16] 2025-12-13 08:46:15,910 [wrapper] ==== wrapper stderr END ====
[2025-12-13 03:46:16]  *** Error codes and diagnostics ***
[2025-12-13 03:46:16]     "exeErrorCode": 0,
[2025-12-13 03:46:16]     "exeErrorDiag": "",
[2025-12-13 03:46:16]     "pilotErrorCode": 0,
[2025-12-13 03:46:16]     "pilotErrorDiag": "",
[2025-12-13 03:46:16]  *** Listing of results directory ***
[2025-12-13 03:46:16] total 414780
[2025-12-13 03:46:16] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 00:46 pilot3.tar.gz
[2025-12-13 03:46:16] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 00:59 queuedata.json
[2025-12-13 03:46:16] -rwx------ 1 boincer umatlas     36322 Dec 13 00:59 runpilot2-wrapper.sh
[2025-12-13 03:46:16] -rw-r--r-- 1 boincer umatlas       100 Dec 13 01:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 03:46:16] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 01:00 run_atlas
[2025-12-13 03:46:16] -rw-r--r-- 1 boincer umatlas       105 Dec 13 01:00 job.xml
[2025-12-13 03:46:16] -rw-r--r-- 2 boincer umatlas 216375461 Dec 13 01:00 EVNT.47898779._000069.pool.root.1
[2025-12-13 03:46:16] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 01:00 start_atlas.sh
[2025-12-13 03:46:16] drwxrwx--x 2 boincer umatlas      4096 Dec 13 01:00 shared
[2025-12-13 03:46:16] -rw-r--r-- 2 boincer umatlas    592383 Dec 13 01:00 input.tar.gz
[2025-12-13 03:46:16] -rw-r--r-- 1 boincer umatlas         0 Dec 13 01:00 boinc_lockfile
[2025-12-13 03:46:16] -rw-r--r-- 1 boincer umatlas      2518 Dec 13 01:00 pandaJob.out
[2025-12-13 03:46:16] -rw------- 1 boincer umatlas        57 Dec 13 01:00 setup.sh.local
[2025-12-13 03:46:16] -rw------- 1 boincer umatlas    991736 Dec 13 01:00 agis_schedconf.cvmfs.json
[2025-12-13 03:46:16] -rw------- 1 boincer umatlas   1516240 Dec 13 01:00 agis_ddmendpoints.agis.ALL.json
[2025-12-13 03:46:16] drwx------ 5 boincer umatlas      4096 Dec 13 01:00 pilot3
[2025-12-13 03:46:16] -rw-r--r-- 1 boincer umatlas      5908 Dec 13 03:38 init_data.xml
[2025-12-13 03:46:16] -rw------- 1 boincer umatlas 200924477 Dec 13 03:45 HITS.47898782._001201.pool.root.1
[2025-12-13 03:46:16] -rw------- 1 boincer umatlas      1048 Dec 13 03:45 memory_monitor_summary.json
[2025-12-13 03:46:16] -rw-r--r-- 1 boincer umatlas       529 Dec 13 03:45 boinc_task_state.xml
[2025-12-13 03:46:16] -rw------- 1 boincer umatlas    384249 Dec 13 03:45 log.47898782._001201.job.log.tgz.1
[2025-12-13 03:46:16] -rw------- 1 boincer umatlas      7833 Dec 13 03:45 heartbeat.json
[2025-12-13 03:46:16] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 03:46 boinc_mmap_file
[2025-12-13 03:46:16] -rw-r--r-- 1 boincer umatlas        28 Dec 13 03:46 wrapper_checkpoint.txt
[2025-12-13 03:46:16] -rw------- 1 boincer umatlas        95 Dec 13 03:46 pilot_heartbeat.json
[2025-12-13 03:46:16] -rw------- 1 boincer umatlas       745 Dec 13 03:46 pilotlog.txt
[2025-12-13 03:46:16] -rw------- 1 boincer umatlas   1374521 Dec 13 03:46 log.47898782._001201.job.log.1
[2025-12-13 03:46:16] -rw------- 1 boincer umatlas       357 Dec 13 03:46 output.list
[2025-12-13 03:46:16] -rw-r--r-- 1 boincer umatlas       620 Dec 13 03:46 runtime_log
[2025-12-13 03:46:16] -rw------- 1 boincer umatlas   1781760 Dec 13 03:46 result.tar.gz
[2025-12-13 03:46:16] -rw-r--r-- 1 boincer umatlas      9337 Dec 13 03:46 runtime_log.err
[2025-12-13 03:46:16] -rw------- 1 boincer umatlas       659 Dec 13 03:46 MYtLDmeqXo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmCrNKDmEutJ8n.diag
[2025-12-13 03:46:16] -rw-r--r-- 1 boincer umatlas     21463 Dec 13 03:46 stderr.txt
[2025-12-13 03:46:16] HITS file was successfully produced:
[2025-12-13 03:46:16] -rw------- 1 boincer umatlas 200924477 Dec 13 03:45 shared/HITS.pool.root.1
[2025-12-13 03:46:16]  *** Contents of shared directory: ***
[2025-12-13 03:46:16] total 409864
[2025-12-13 03:46:16] -rw-r--r-- 2 boincer umatlas 216375461 Dec 13 01:00 ATLAS.root_0
[2025-12-13 03:46:16] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 01:00 start_atlas.sh
[2025-12-13 03:46:16] -rw-r--r-- 2 boincer umatlas    592383 Dec 13 01:00 input.tar.gz
[2025-12-13 03:46:16] -rw------- 1 boincer umatlas 200924477 Dec 13 03:45 HITS.pool.root.1
[2025-12-13 03:46:16] -rw------- 1 boincer umatlas   1781760 Dec 13 03:46 result.tar.gz
03:46:17 (24015): run_atlas exited; CPU time 73598.642228
03:46:17 (24015): called boinc_finish(0)

</stderr_txt>
]]>

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