Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:15:52 (17107): wrapper (7.7.26015): starting
11:15:52 (17107): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 11:15:52] Arguments: --nthreads 8
[2025-12-13 11:15:52] Threads: 8
[2025-12-13 11:15:52] Checking for CVMFS
[2025-12-13 11:15:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 11:15:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 11:15:54] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 11:15:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 11:15:55] 2.11.2.0 28366 196523 138444 153957 3 47 16935962 25165825 4270 130560 12 64376868 99.880 35308376 2166 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-13 11:15:55] CVMFS is ok
[2025-12-13 11:15:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 11:15:55] Checking for apptainer binary...
[2025-12-13 11:15:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 11:15:55] Running /usr/bin/apptainer --version
[2025-12-13 11:15:55] apptainer version 1.3.2-1.el7
[2025-12-13 11:15:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 11:16:01] cg-vwn288.simple-grid.lan
[2025-12-13 11:16:01] apptainer works
[2025-12-13 11:16:01] Set ATHENA_PROC_NUMBER=8
[2025-12-13 11:16:01] Set ATHENA_CORE_NUMBER=8
[2025-12-13 11:16:01] Starting ATLAS job with PandaID=6928966210
[2025-12-13 11:16:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 17:23:59]  *** The last 200 lines of the pilot log: ***
[2025-12-13 17:23:59] 2025-12-13 16:23:10,122 | INFO     | time since job start (21839s) is within the limit (174528.0s)
[2025-12-13 17:23:59] 2025-12-13 16:23:11,344 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-13 17:23:59] 2025-12-13 16:23:11,345 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-13 17:23:59] 2025-12-13 16:23:11,347 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6928966210/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 17:23:59] 2025-12-13 16:23:11,348 | INFO     | extracted standard info from prmon json
[2025-12-13 17:23:59] 2025-12-13 16:23:11,348 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 17:23:59] 2025-12-13 16:23:11,348 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 17:23:59] 2025-12-13 16:23:11,348 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 17:23:59] 2025-12-13 16:23:11,349 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 17:23:59] 2025-12-13 16:23:11,358 | INFO     | fitting pss+swap vs Time
[2025-12-13 17:23:59] 2025-12-13 16:23:11,359 | INFO     | sum of square deviations: 13181084350.0
[2025-12-13 17:23:59] 2025-12-13 16:23:11,363 | INFO     | sum of deviations: 94130906697.99997
[2025-12-13 17:23:59] 2025-12-13 16:23:11,363 | INFO     | mean x: 1765632248.0
[2025-12-13 17:23:59] 2025-12-13 16:23:11,363 | INFO     | mean y: 2464116.699140401
[2025-12-13 17:23:59] 2025-12-13 16:23:11,363 | INFO     | intersect: -12606556506.059256
[2025-12-13 17:23:59] 2025-12-13 16:23:11,364 | INFO     | chi2: 6.5765341692725325
[2025-12-13 17:23:59] 2025-12-13 16:23:11,373 | INFO     | sum of square deviations: 12622636670.0
[2025-12-13 17:23:59] 2025-12-13 16:23:11,377 | INFO     | sum of deviations: 115751871290.49997
[2025-12-13 17:23:59] 2025-12-13 16:23:11,377 | INFO     | mean x: 1765632095.5
[2025-12-13 17:23:59] 2025-12-13 16:23:11,377 | INFO     | mean y: 2469947.6540697673
[2025-12-13 17:23:59] 2025-12-13 16:23:11,377 | INFO     | intersect: -16188697112.586739
[2025-12-13 17:23:59] 2025-12-13 16:23:11,378 | INFO     | chi2: 5.845373279996412
[2025-12-13 17:23:59] 2025-12-13 16:23:11,378 | INFO     | current chi2=5.845373279996412 (change=11.117723567716187 %)
[2025-12-13 17:23:59] 2025-12-13 16:23:11,378 | INFO     | right removable region: 343
[2025-12-13 17:23:59] 2025-12-13 16:23:11,379 | INFO     | sum of square deviations: 12622636670.0
[2025-12-13 17:23:59] 2025-12-13 16:23:11,383 | INFO     | sum of deviations: -27578831237.5
[2025-12-13 17:23:59] 2025-12-13 16:23:11,383 | INFO     | mean x: 1765632400.5
[2025-12-13 17:23:59] 2025-12-13 16:23:11,383 | INFO     | mean y: 2497334.2238372094
[2025-12-13 17:23:59] 2025-12-13 16:23:11,383 | INFO     | intersect: 3860176143.642624
[2025-12-13 17:23:59] 2025-12-13 16:23:11,384 | INFO     | chi2: 1.9347904903752275
[2025-12-13 17:23:59] 2025-12-13 16:23:11,384 | INFO     | current chi2=1.9347904903752275 (change=70.5803932500628 %)
[2025-12-13 17:23:59] 2025-12-13 16:23:11,385 | INFO     | sum of square deviations: 12080189290.0
[2025-12-13 17:23:59] 2025-12-13 16:23:11,396 | INFO     | sum of deviations: -73121706500.0
[2025-12-13 17:23:59] 2025-12-13 16:23:11,397 | INFO     | mean x: 1765632553.0
[2025-12-13 17:23:59] 2025-12-13 16:23:11,397 | INFO     | mean y: 2510071.0
[2025-12-13 17:23:59] 2025-12-13 16:23:11,397 | INFO     | intersect: 10689930791.649294
[2025-12-13 17:23:59] 2025-12-13 16:23:11,398 | INFO     | chi2: 1.0118473057446924
[2025-12-13 17:23:59] 2025-12-13 16:23:11,398 | INFO     | current chi2=1.0118473057446924 (change=47.70248712828551 %)
[2025-12-13 17:23:59] 2025-12-13 16:23:11,398 | INFO     | sum of square deviations: 11553509647.5
[2025-12-13 17:23:59] 2025-12-13 16:23:11,402 | INFO     | sum of deviations: -69627877271.00002
[2025-12-13 17:23:59] 2025-12-13 16:23:11,402 | INFO     | mean x: 1765632705.5
[2025-12-13 17:23:59] 2025-12-13 16:23:11,402 | INFO     | mean y: 2509044.347305389
[2025-12-13 17:23:59] 2025-12-13 16:23:11,402 | INFO     | intersect: 10643194089.416656
[2025-12-13 17:23:59] 2025-12-13 16:23:11,403 | INFO     | chi2: 0.9980255835088895
[2025-12-13 17:23:59] 2025-12-13 16:23:11,403 | INFO     | current chi2=0.9980255835088895 (change=1.3659889350232046 %)
[2025-12-13 17:23:59] 2025-12-13 16:23:11,403 | INFO     | left removable region: 30
[2025-12-13 17:23:59] 2025-12-13 16:23:11,404 | INFO     | sum of square deviations: 9508390372.0
[2025-12-13 17:23:59] 2025-12-13 16:23:11,407 | INFO     | sum of deviations: -12103467439.000004
[2025-12-13 17:23:59] 2025-12-13 16:23:11,407 | INFO     | mean x: 1765632980.0
[2025-12-13 17:23:59] 2025-12-13 16:23:11,407 | INFO     | mean y: 2504830.7060702876
[2025-12-13 17:23:59] 2025-12-13 16:23:11,408 | INFO     | intersect: 2250023122.0863924
[2025-12-13 17:23:59] 2025-12-13 16:23:11,408 | INFO     | chi2: 0.11690238554221859
[2025-12-13 17:23:59] 2025-12-13 16:23:11,408 | INFO     | current memory leak: -1.27 B/s (using 313 data points, chi2=0.12)
[2025-12-13 17:23:59] 2025-12-13 16:23:11,409 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2025-12-13 17:23:59] 2025-12-13 16:23:11,409 | INFO     | ..............................
[2025-12-13 17:23:59] 2025-12-13 16:23:11,409 | INFO     | . Timing measurements:
[2025-12-13 17:23:59] 2025-12-13 16:23:11,410 | INFO     | . get job = 0 s
[2025-12-13 17:23:59] 2025-12-13 16:23:11,410 | INFO     | . initial setup = 5 s
[2025-12-13 17:23:59] 2025-12-13 16:23:11,410 | INFO     | . payload setup = 133 s
[2025-12-13 17:23:59] 2025-12-13 16:23:11,410 | INFO     | . stage-in = 0 s
[2025-12-13 17:23:59] 2025-12-13 16:23:11,410 | INFO     | . payload execution = 21408 s
[2025-12-13 17:23:59] 2025-12-13 16:23:11,410 | INFO     | . stage-out = 8 s
[2025-12-13 17:23:59] 2025-12-13 16:23:11,410 | INFO     | . log creation = 1 s
[2025-12-13 17:23:59] 2025-12-13 16:23:11,410 | INFO     | ..............................
[2025-12-13 17:23:59] 2025-12-13 16:23:11,542 | INFO     | 
[2025-12-13 17:23:59] 2025-12-13 16:23:11,543 | INFO     | job summary report
[2025-12-13 17:23:59] 2025-12-13 16:23:11,543 | INFO     | --------------------------------------------------
[2025-12-13 17:23:59] 2025-12-13 16:23:11,543 | INFO     | PanDA job id: 6928966210
[2025-12-13 17:23:59] 2025-12-13 16:23:11,543 | INFO     | task id: 47898782
[2025-12-13 17:23:59] 2025-12-13 16:23:11,543 | INFO     | errors: (none)
[2025-12-13 17:23:59] 2025-12-13 16:23:11,543 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 17:23:59] 2025-12-13 16:23:11,543 | INFO     | pilot state: finished 
[2025-12-13 17:23:59] 2025-12-13 16:23:11,543 | INFO     | transexitcode: 0
[2025-12-13 17:23:59] 2025-12-13 16:23:11,543 | INFO     | exeerrorcode: 0
[2025-12-13 17:23:59] 2025-12-13 16:23:11,543 | INFO     | exeerrordiag: 
[2025-12-13 17:23:59] 2025-12-13 16:23:11,543 | INFO     | exitcode: 0
[2025-12-13 17:23:59] 2025-12-13 16:23:11,544 | INFO     | exitmsg: OK
[2025-12-13 17:23:59] 2025-12-13 16:23:11,544 | INFO     | cpuconsumptiontime: 78105 s
[2025-12-13 17:23:59] 2025-12-13 16:23:11,544 | INFO     | nevents: 400
[2025-12-13 17:23:59] 2025-12-13 16:23:11,544 | INFO     | neventsw: 0
[2025-12-13 17:23:59] 2025-12-13 16:23:11,544 | INFO     | pid: 27538
[2025-12-13 17:23:59] 2025-12-13 16:23:11,544 | INFO     | pgrp: 27538
[2025-12-13 17:23:59] 2025-12-13 16:23:11,544 | INFO     | corecount: 8
[2025-12-13 17:23:59] 2025-12-13 16:23:11,544 | INFO     | event service: False
[2025-12-13 17:23:59] 2025-12-13 16:23:11,544 | INFO     | sizes: {0: 2283146, 1: 2284002, 2: 2284030, 13: 2284030, 23: 2284086, 34: 2284114, 45: 2284270, 55: 2284298, 66: 2284326, 77: 2284354, 88: 2284410, 91: 2284980, 98
[2025-12-13 17:23:59] 2025-12-13 16:23:11,544 | INFO     | --------------------------------------------------
[2025-12-13 17:23:59] 2025-12-13 16:23:11,545 | INFO     | 
[2025-12-13 17:23:59] 2025-12-13 16:23:11,545 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-12-13 17:23:59] 2025-12-13 16:23:12,065 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 17:23:59] 2025-12-13 16:23:12,066 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 17:23:59] 2025-12-13 16:23:12,066 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 17:23:59] 2025-12-13 16:23:12,066 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 17:23:59] 2025-12-13 16:23:12,066 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 17:23:59] 2025-12-13 16:23:12,066 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 17:23:59] 2025-12-13 16:23:12,066 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 17:23:59] 2025-12-13 16:23:12,066 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 17:23:59] 2025-12-13 16:23:12,066 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 17:23:59] 2025-12-13 16:23:12,067 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 17:23:59] 2025-12-13 16:23:12,067 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 17:23:59] 2025-12-13 16:23:12,067 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 17:23:59] 2025-12-13 16:23:12,067 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 17:23:59] 2025-12-13 16:23:12,067 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 17:23:59] 2025-12-13 16:23:12,067 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 17:23:59] 2025-12-13 16:23:12,067 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 17:23:59] 2025-12-13 16:23:12,067 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 17:23:59] 2025-12-13 16:23:12,067 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 17:23:59] 2025-12-13 16:23:12,067 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 17:23:59] 2025-12-13 16:23:12,068 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 17:23:59] 2025-12-13 16:23:12,068 | INFO     | job 6928966210 has completed (purged errors)
[2025-12-13 17:23:59] 2025-12-13 16:23:12,068 | INFO     | overall cleanup function is called
[2025-12-13 17:23:59] 2025-12-13 16:23:13,077 | INFO     | --- collectZombieJob: --- 10, [27538]
[2025-12-13 17:23:59] 2025-12-13 16:23:13,078 | INFO     | zombie collector waiting for pid 27538
[2025-12-13 17:23:59] 2025-12-13 16:23:13,078 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 17:23:59] 2025-12-13 16:23:13,078 | INFO     | collected zombie processes
[2025-12-13 17:23:59] 2025-12-13 16:23:13,078 | INFO     | will attempt to kill all subprocesses of pid=27538
[2025-12-13 17:23:59] 2025-12-13 16:23:13,218 | INFO     | process IDs to be killed: [27538] (in reverse order)
[2025-12-13 17:23:59] 2025-12-13 16:23:14,361 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 17:23:59] 2025-12-13 16:23:14,361 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 17:23:59] 2025-12-13 16:23:14,365 | INFO     | did not find any defunct processes belonging to 27538
[2025-12-13 17:23:59] 2025-12-13 16:23:14,368 | INFO     | did not find any defunct processes belonging to 27538
[2025-12-13 17:23:59] 2025-12-13 16:23:14,368 | INFO     | ready for new job
[2025-12-13 17:23:59] 2025-12-13 16:23:14,368 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 17:23:59] 2025-12-13 16:23:14,371 | INFO     | ***************************************
[2025-12-13 17:23:59] 2025-12-13 16:23:14,371 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 17:23:59] 2025-12-13 16:23:14,371 | INFO     | ***************************************
[2025-12-13 17:23:59] 2025-12-13 16:23:14,371 | INFO     | 
[2025-12-13 17:23:59] 2025-12-13 16:23:14,372 | INFO     | pilot is running in a VM
[2025-12-13 17:23:59] 2025-12-13 16:23:14,372 | INFO     | architecture information:
[2025-12-13 17:23:59] 2025-12-13 16:23:14,385 | INFO     | executing command: cat /etc/os-release
[2025-12-13 17:23:59] 2025-12-13 16:23:14,682 | INFO     | cat /etc/os-release:
[2025-12-13 17:23:59] NAME="CentOS Linux"
[2025-12-13 17:23:59] VERSION="7 (Core)"
[2025-12-13 17:23:59] ID="centos"
[2025-12-13 17:23:59] ID_LIKE="rhel fedora"
[2025-12-13 17:23:59] VERSION_ID="7"
[2025-12-13 17:23:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 17:23:59] ANSI_COLOR="0;31"
[2025-12-13 17:23:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 17:23:59] HOME_URL="https://www.centos.org/"
[2025-12-13 17:23:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 17:23:59] 
[2025-12-13 17:23:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 17:23:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 17:23:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 17:23:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 17:23:59] 
[2025-12-13 17:23:59] 2025-12-13 16:23:14,682 | INFO     | ***************************************
[2025-12-13 17:23:59] 2025-12-13 16:23:15,186 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-12-13 17:23:59] 2025-12-13 16:23:15,420 | INFO     | sufficient remaining disk space (496977838080 B)
[2025-12-13 17:23:59] 2025-12-13 16:23:15,420 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 17:23:59] 2025-12-13 16:23:15,421 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 17:23:59] 2025-12-13 16:23:15,421 | INFO     | update_server=False
[2025-12-13 17:23:59] 2025-12-13 16:23:15,421 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 17:23:59] 2025-12-13 16:23:15,421 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 17:23:59] 2025-12-13 16:23:15,422 | INFO     | aborting loop
[2025-12-13 17:23:59] 2025-12-13 16:23:15,596 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 17:23:59] 2025-12-13 16:23:15,721 | INFO     | all payload control threads have been joined
[2025-12-13 17:23:59] 2025-12-13 16:23:16,281 | INFO     | all data control threads have been joined
[2025-12-13 17:23:59] 2025-12-13 16:23:16,427 | INFO     | [job] retrieve thread has finished
[2025-12-13 17:23:59] 2025-12-13 16:23:16,427 | INFO     | [job] job monitor thread has finished
[2025-12-13 17:23:59] 2025-12-13 16:23:16,560 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 17:23:59] 2025-12-13 16:23:16,728 | INFO     | [payload] control thread has finished
[2025-12-13 17:23:59] 2025-12-13 16:23:16,744 | INFO     | all job control threads have been joined
[2025-12-13 17:23:59] 2025-12-13 16:23:16,935 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 17:23:59] 2025-12-13 16:23:16,984 | INFO     | [job] validate thread has finished
[2025-12-13 17:23:59] 2025-12-13 16:23:17,105 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 17:23:59] 2025-12-13 16:23:17,220 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 17:23:59] 2025-12-13 16:23:17,288 | INFO     | [data] control thread has finished
[2025-12-13 17:23:59] 2025-12-13 16:23:17,457 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 17:23:59] 2025-12-13 16:23:17,554 | INFO     | [data] copytool_in thread has finished
[2025-12-13 17:23:59] 2025-12-13 16:23:17,567 | INFO     | [job] queue monitor thread has finished
[2025-12-13 17:23:59] 2025-12-13 16:23:17,604 | INFO     | [data] copytool_out thread has finished
[2025-12-13 17:23:59] 2025-12-13 16:23:17,677 | INFO     | [payload] failed_post thread has finished
[2025-12-13 17:23:59] 2025-12-13 16:23:17,711 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 17:23:59] 2025-12-13 16:23:17,751 | INFO     | [job] control thread has finished
[2025-12-13 17:23:59] 2025-12-13 16:23:17,921 | INFO     | [payload] validate_post thread has finished
[2025-12-13 17:23:59] 2025-12-13 16:23:21,721 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 17:23:59] 2025-12-13 16:23:43,358 | INFO     | PID=20892 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 17:23:59] 2025-12-13 16:23:43,359 | INFO     | .. there are 9 such processes running
[2025-12-13 17:23:59] 2025-12-13 16:23:43,360 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 17:23:59] 2025-12-13 16:23:43,360 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 17:23:59] 2025-12-13 16:23:43,360 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 17:23:59] 2025-12-13 16:23:48,293 | INFO     | [monitor] cgroup control has ended
[2025-12-13 17:23:59] 2025-12-13 16:23:49,041 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139917147252544)>', '<ExcThread(monitor, started 139916277184256)>']
[2025-12-13 17:23:59] 2025-12-13 16:23:49,395 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 17:23:59] 2025-12-13 16:23:49,396 | INFO     | [monitor] control thread has ended
[2025-12-13 17:23:59] 2025-12-13 16:23:54,066 | INFO     | all workflow threads have been joined
[2025-12-13 17:23:59] 2025-12-13 16:23:54,067 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 17:23:59] 2025-12-13 16:23:54,067 | INFO     | traces error code: 0
[2025-12-13 17:23:59] 2025-12-13 16:23:54,067 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 17:23:59] 2025-12-13 16:23:54,383 [wrapper] ==== pilot stdout END ====
[2025-12-13 17:23:59] 2025-12-13 16:23:54,487 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 17:23:59] 2025-12-13 16:23:54,533 [wrapper] pilotpid: 20892
[2025-12-13 17:23:59] 2025-12-13 16:23:54,609 [wrapper] Pilot exit status: 0
[2025-12-13 17:23:59] 2025-12-13 16:23:55,152 [wrapper] pandaids: 6928966210
[2025-12-13 17:23:59] 2025-12-13 16:23:56,092 [wrapper] cleanup supervisor_pilot 16105 20893
[2025-12-13 17:23:59] 2025-12-13 16:23:56,204 [wrapper] Test setup, not cleaning
[2025-12-13 17:23:59] 2025-12-13 16:23:56,319 [wrapper] apfmon messages muted
[2025-12-13 17:23:59] 2025-12-13 16:23:56,409 [wrapper] ==== wrapper stdout END ====
[2025-12-13 17:23:59] 2025-12-13 16:23:56,558 [wrapper] ==== wrapper stderr END ====
[2025-12-13 17:23:59]  *** Error codes and diagnostics ***
[2025-12-13 17:23:59]     "exeErrorCode": 0,
[2025-12-13 17:23:59]     "exeErrorDiag": "",
[2025-12-13 17:23:59]     "pilotErrorCode": 0,
[2025-12-13 17:23:59]     "pilotErrorDiag": "",
[2025-12-13 17:23:59]  *** Listing of results directory ***
[2025-12-13 17:23:59] total 418876
[2025-12-13 17:23:59] -rw-r--r--. 1 boinc boinc    579449 Dec 13 05:45 pilot3.tar.gz
[2025-12-13 17:23:59] -rw-r--r--. 1 boinc boinc      5112 Dec 13 06:02 queuedata.json
[2025-12-13 17:23:59] -rwx------. 1 boinc boinc     36322 Dec 13 06:02 runpilot2-wrapper.sh
[2025-12-13 17:23:59] -rw-r--r--. 1 boinc boinc       100 Dec 13 11:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 17:23:59] -rwxr-xr-x. 1 boinc boinc      7986 Dec 13 11:15 run_atlas
[2025-12-13 17:23:59] -rw-r--r--. 1 boinc boinc       105 Dec 13 11:15 job.xml
[2025-12-13 17:23:59] -rw-r--r--. 2 boinc boinc 215459255 Dec 13 11:15 EVNT.47898779._000044.pool.root.1
[2025-12-13 17:23:59] -rw-r--r--. 2 boinc boinc     15847 Dec 13 11:15 start_atlas.sh
[2025-12-13 17:23:59] drwxrwx--x. 2 boinc boinc        68 Dec 13 11:15 shared
[2025-12-13 17:23:59] -rw-r--r--. 2 boinc boinc    592385 Dec 13 11:15 input.tar.gz
[2025-12-13 17:23:59] -rw-r--r--. 1 boinc boinc      6392 Dec 13 11:15 init_data.xml
[2025-12-13 17:23:59] -rw-r--r--. 1 boinc boinc         0 Dec 13 11:15 boinc_lockfile
[2025-12-13 17:23:59] -rw-r--r--. 1 boinc boinc      2519 Dec 13 11:16 pandaJob.out
[2025-12-13 17:23:59] -rw-------. 1 boinc boinc    991728 Dec 13 11:19 agis_schedconf.cvmfs.json
[2025-12-13 17:23:59] drwx------. 5 boinc boinc      4096 Dec 13 11:19 pilot3
[2025-12-13 17:23:59] -rw-------. 1 boinc boinc 202620206 Dec 13 17:20 HITS.47898782._000595.pool.root.1
[2025-12-13 17:23:59] -rw-r--r--. 1 boinc boinc       531 Dec 13 17:20 boinc_task_state.xml
[2025-12-13 17:23:59] -rw-------. 1 boinc boinc      1017 Dec 13 17:21 memory_monitor_summary.json
[2025-12-13 17:23:59] -rw-------. 1 boinc boinc   1516240 Dec 13 17:21 agis_ddmendpoints.agis.ALL.json
[2025-12-13 17:23:59] -rw-------. 1 boinc boinc    564575 Dec 13 17:21 log.47898782._000595.job.log.tgz.1
[2025-12-13 17:23:59] -rw-------. 1 boinc boinc      7773 Dec 13 17:23 heartbeat.json
[2025-12-13 17:23:59] -rw-------. 1 boinc boinc        95 Dec 13 17:23 pilot_heartbeat.json
[2025-12-13 17:23:59] -rw-r--r--. 1 boinc boinc      8192 Dec 13 17:23 boinc_mmap_file
[2025-12-13 17:23:59] -rw-------. 1 boinc boinc      4884 Dec 13 17:23 pilotlog.txt
[2025-12-13 17:23:59] -rw-r--r--. 1 boinc boinc        28 Dec 13 17:23 wrapper_checkpoint.txt
[2025-12-13 17:23:59] -rw-------. 1 boinc boinc   2906027 Dec 13 17:23 log.47898782._000595.job.log.1
[2025-12-13 17:23:59] -rw-------. 1 boinc boinc       357 Dec 13 17:23 output.list
[2025-12-13 17:23:59] -rw-r--r--. 1 boinc boinc       620 Dec 13 17:23 runtime_log
[2025-12-13 17:23:59] -rw-------. 1 boinc boinc   3491840 Dec 13 17:23 result.tar.gz
[2025-12-13 17:23:59] -rw-r--r--. 1 boinc boinc      8817 Dec 13 17:23 runtime_log.err
[2025-12-13 17:23:59] -rw-------. 1 boinc boinc       658 Dec 13 17:23 mNKODmRxWo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPmRKDm6R2k1n.diag
[2025-12-13 17:23:59] -rw-r--r--. 1 boinc boinc     20778 Dec 13 17:23 stderr.txt
[2025-12-13 17:23:59] HITS file was successfully produced:
[2025-12-13 17:23:59] -rw-------. 1 boinc boinc 202620206 Dec 13 17:20 shared/HITS.pool.root.1
[2025-12-13 17:23:59]  *** Contents of shared directory: ***
[2025-12-13 17:23:59] total 412292
[2025-12-13 17:23:59] -rw-r--r--. 2 boinc boinc 215459255 Dec 13 11:15 ATLAS.root_0
[2025-12-13 17:23:59] -rw-r--r--. 2 boinc boinc     15847 Dec 13 11:15 start_atlas.sh
[2025-12-13 17:23:59] -rw-r--r--. 2 boinc boinc    592385 Dec 13 11:15 input.tar.gz
[2025-12-13 17:23:59] -rw-------. 1 boinc boinc 202620206 Dec 13 17:20 HITS.pool.root.1
[2025-12-13 17:23:59] -rw-------. 1 boinc boinc   3491840 Dec 13 17:23 result.tar.gz
17:24:00 (17107): run_atlas exited; CPU time 78424.485596
17:24:00 (17107): called boinc_finish(0)

</stderr_txt>
]]>

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