Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:13:39 (275162): wrapper (7.7.26015): starting
00:13:39 (275162): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 00:13:39] Arguments: --nthreads 8
[2025-12-13 00:13:39] Threads: 8
[2025-12-13 00:13:39] Checking for CVMFS
[2025-12-13 00:13:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 00:13:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 00:13:40] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 00:13:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 00:13:42] 2.13.2.0 6383 58394 280204 153949 1 352 31529637 40960001 11837 16776704 0 72478950 99.725 47374344 37084 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 00:13:42] CVMFS is ok
[2025-12-13 00:13:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 00:13:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 00:13:42] Further information can be found at the LHC@home message board.
[2025-12-13 00:13:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 00:13:42] Checking for apptainer binary...
[2025-12-13 00:13:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 00:13:42] Running /usr/bin/apptainer --version
[2025-12-13 00:13:42] apptainer version 1.4.4-1.el9
[2025-12-13 00:13:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 00:13:42] c-210-37-2.aglt2.org
[2025-12-13 00:13:42] apptainer works
[2025-12-13 00:13:42] Set ATHENA_PROC_NUMBER=8
[2025-12-13 00:13:42] Set ATHENA_CORE_NUMBER=8
[2025-12-13 00:13:43] Starting ATLAS job with PandaID=6928965133
[2025-12-13 00:13:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 11:37:02]  *** The last 200 lines of the pilot log: ***
[2025-12-13 11:37:02] 2025-12-13 11:14:29,513 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2822.7211071428574
[2025-12-13 11:37:02] 2025-12-13 11:14:29,548 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6928965133/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 11:37:02] 2025-12-13 11:14:29,552 | INFO     | extracted standard info from prmon json
[2025-12-13 11:37:02] 2025-12-13 11:14:29,552 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 11:37:02] 2025-12-13 11:14:29,552 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 11:37:02] 2025-12-13 11:14:29,555 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 11:37:02] 2025-12-13 11:14:29,555 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 11:37:02] 2025-12-13 11:14:29,567 | INFO     | fitting pss+swap vs Time
[2025-12-13 11:37:02] 2025-12-13 11:14:29,568 | INFO     | sum of square deviations: 13408149782.330536
[2025-12-13 11:37:02] 2025-12-13 11:14:29,571 | INFO     | sum of deviations: 94697148160.63254
[2025-12-13 11:37:02] 2025-12-13 11:14:29,571 | INFO     | mean x: 1765613719.6638176
[2025-12-13 11:37:02] 2025-12-13 11:14:29,571 | INFO     | mean y: 2406238.6324786325
[2025-12-13 11:37:02] 2025-12-13 11:14:29,571 | INFO     | intersect: -12467515914.667665
[2025-12-13 11:37:02] 2025-12-13 11:14:29,571 | INFO     | chi2: 8.07360112421484
[2025-12-13 11:37:02] 2025-12-13 11:14:29,572 | INFO     | sum of square deviations: 12843307927.595404
[2025-12-13 11:37:02] 2025-12-13 11:14:29,574 | INFO     | sum of deviations: 201335784541.2657
[2025-12-13 11:37:02] 2025-12-13 11:14:29,574 | INFO     | mean x: 1765613567.1734104
[2025-12-13 11:37:02] 2025-12-13 11:14:29,575 | INFO     | mean y: 2435030.528901734
[2025-12-13 11:37:02] 2025-12-13 11:14:29,575 | INFO     | intersect: -27675885441.704494
[2025-12-13 11:37:02] 2025-12-13 11:14:29,575 | INFO     | chi2: 4.576383000617837
[2025-12-13 11:37:02] 2025-12-13 11:14:29,575 | INFO     | current chi2=4.576383000617837 (change=43.31670675564998 %)
[2025-12-13 11:37:02] 2025-12-13 11:14:29,576 | INFO     | sum of square deviations: 12294475339.214075
[2025-12-13 11:37:02] 2025-12-13 11:14:29,578 | INFO     | sum of deviations: 197842579783.29916
[2025-12-13 11:37:02] 2025-12-13 11:14:29,578 | INFO     | mean x: 1765613414.6715543
[2025-12-13 11:37:02] 2025-12-13 11:14:29,578 | INFO     | mean y: 2434060.020527859
[2025-12-13 11:37:02] 2025-12-13 11:14:29,578 | INFO     | intersect: -28409800152.566063
[2025-12-13 11:37:02] 2025-12-13 11:14:29,579 | INFO     | chi2: 4.576999885926295
[2025-12-13 11:37:02] 2025-12-13 11:14:29,579 | INFO     | current chi2=4.576999885926295 (change=-0.013479757012783268 %)
[2025-12-13 11:37:02] 2025-12-13 11:14:29,579 | INFO     | right removable region: 340
[2025-12-13 11:37:02] 2025-12-13 11:14:29,579 | INFO     | sum of square deviations: 12843187330.939377
[2025-12-13 11:37:02] 2025-12-13 11:14:29,582 | INFO     | sum of deviations: -11934623592.875755
[2025-12-13 11:37:02] 2025-12-13 11:14:29,582 | INFO     | mean x: 1765613872.1705203
[2025-12-13 11:37:02] 2025-12-13 11:14:29,582 | INFO     | mean y: 2434991.0317919077
[2025-12-13 11:37:02] 2025-12-13 11:14:29,582 | INFO     | intersect: 1643144297.1985319
[2025-12-13 11:37:02] 2025-12-13 11:14:29,582 | INFO     | chi2: 4.5142510055421825
[2025-12-13 11:37:02] 2025-12-13 11:14:29,582 | INFO     | current chi2=4.5142510055421825 (change=44.086276543898556 %)
[2025-12-13 11:37:02] 2025-12-13 11:14:29,583 | INFO     | sum of square deviations: 12294360051.21407
[2025-12-13 11:37:02] 2025-12-13 11:14:29,585 | INFO     | sum of deviations: -54103319882.69793
[2025-12-13 11:37:02] 2025-12-13 11:14:29,586 | INFO     | mean x: 1765614024.6715543
[2025-12-13 11:37:02] 2025-12-13 11:14:29,586 | INFO     | mean y: 2446686.6187683283
[2025-12-13 11:37:02] 2025-12-13 11:14:29,586 | INFO     | intersect: 7772316770.808279
[2025-12-13 11:37:02] 2025-12-13 11:14:29,586 | INFO     | chi2: 3.945551709126887
[2025-12-13 11:37:02] 2025-12-13 11:14:29,586 | INFO     | current chi2=3.945551709126887 (change=12.5978660849186 %)
[2025-12-13 11:37:02] 2025-12-13 11:14:29,586 | INFO     | left removable region: 20
[2025-12-13 11:37:02] 2025-12-13 11:14:29,587 | INFO     | sum of square deviations: 10159842673.487421
[2025-12-13 11:37:02] 2025-12-13 11:14:29,589 | INFO     | sum of deviations: 9924312680.075008
[2025-12-13 11:37:02] 2025-12-13 11:14:29,589 | INFO     | mean x: 1765613994.18125
[2025-12-13 11:37:02] 2025-12-13 11:14:29,589 | INFO     | mean y: 2488919.4125
[2025-12-13 11:37:02] 2025-12-13 11:14:29,589 | INFO     | intersect: -1722193825.5572276
[2025-12-13 11:37:02] 2025-12-13 11:14:29,590 | INFO     | chi2: 0.07002083598484649
[2025-12-13 11:37:02] 2025-12-13 11:14:29,590 | INFO     | current memory leak: 0.98 B/s (using 320 data points, chi2=0.07)
[2025-12-13 11:37:02] 2025-12-13 11:14:29,591 | INFO     | could have reported an average CPU frequency of 2684 MHz (15 samples)
[2025-12-13 11:37:02] 2025-12-13 11:14:29,591 | INFO     | ..............................
[2025-12-13 11:37:02] 2025-12-13 11:14:29,591 | INFO     | . Timing measurements:
[2025-12-13 11:37:02] 2025-12-13 11:14:29,591 | INFO     | . get job = 1 s
[2025-12-13 11:37:02] 2025-12-13 11:14:29,591 | INFO     | . initial setup = 6 s
[2025-12-13 11:37:02] 2025-12-13 11:14:29,591 | INFO     | . payload setup = 40 s
[2025-12-13 11:37:02] 2025-12-13 11:14:29,591 | INFO     | . stage-in = 0 s
[2025-12-13 11:37:02] 2025-12-13 11:14:29,591 | INFO     | . payload execution = 21440 s
[2025-12-13 11:37:02] 2025-12-13 11:14:29,591 | INFO     | . stage-out = 2 s
[2025-12-13 11:37:02] 2025-12-13 11:14:29,591 | INFO     | . log creation = 0 s
[2025-12-13 11:37:02] 2025-12-13 11:14:29,591 | INFO     | ..............................
[2025-12-13 11:37:02] 2025-12-13 11:14:29,715 | INFO     | 
[2025-12-13 11:37:02] 2025-12-13 11:14:29,715 | INFO     | job summary report
[2025-12-13 11:37:02] 2025-12-13 11:14:29,715 | INFO     | --------------------------------------------------
[2025-12-13 11:37:02] 2025-12-13 11:14:29,715 | INFO     | PanDA job id: 6928965133
[2025-12-13 11:37:02] 2025-12-13 11:14:29,716 | INFO     | task id: 47898782
[2025-12-13 11:37:02] 2025-12-13 11:14:29,716 | INFO     | errors: (none)
[2025-12-13 11:37:02] 2025-12-13 11:14:29,716 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 11:37:02] 2025-12-13 11:14:29,716 | INFO     | pilot state: finished 
[2025-12-13 11:37:02] 2025-12-13 11:14:29,716 | INFO     | transexitcode: 0
[2025-12-13 11:37:02] 2025-12-13 11:14:29,716 | INFO     | exeerrorcode: 0
[2025-12-13 11:37:02] 2025-12-13 11:14:29,716 | INFO     | exeerrordiag: 
[2025-12-13 11:37:02] 2025-12-13 11:14:29,716 | INFO     | exitcode: 0
[2025-12-13 11:37:02] 2025-12-13 11:14:29,716 | INFO     | exitmsg: OK
[2025-12-13 11:37:02] 2025-12-13 11:14:29,716 | INFO     | cpuconsumptiontime: 63799 s
[2025-12-13 11:37:02] 2025-12-13 11:14:29,716 | INFO     | nevents: 400
[2025-12-13 11:37:02] 2025-12-13 11:14:29,717 | INFO     | neventsw: 0
[2025-12-13 11:37:02] 2025-12-13 11:14:29,717 | INFO     | pid: 322166
[2025-12-13 11:37:02] 2025-12-13 11:14:29,717 | INFO     | pgrp: 322166
[2025-12-13 11:37:02] 2025-12-13 11:14:29,717 | INFO     | corecount: 8
[2025-12-13 11:37:02] 2025-12-13 11:14:29,717 | INFO     | event service: False
[2025-12-13 11:37:02] 2025-12-13 11:14:29,717 | INFO     | sizes: {0: 2283747, 1: 2283803, 3: 2284030, 4: 2284058, 16: 2284058, 27: 2284086, 37: 2284504, 38: 2284532, 21485: 2318362, 21486: 2318361, 21490: 2327415, 21492: 
[2025-12-13 11:37:02] 2025-12-13 11:14:29,717 | INFO     | --------------------------------------------------
[2025-12-13 11:37:02] 2025-12-13 11:14:29,717 | INFO     | 
[2025-12-13 11:37:02] 2025-12-13 11:14:29,717 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-12-13 11:37:02] 2025-12-13 11:14:29,774 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 11:37:02] 2025-12-13 11:14:29,775 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 11:37:02] 2025-12-13 11:14:29,775 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 11:37:02] 2025-12-13 11:14:29,775 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 11:37:02] 2025-12-13 11:14:29,775 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 11:37:02] 2025-12-13 11:14:29,775 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 11:37:02] 2025-12-13 11:14:29,775 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 11:37:02] 2025-12-13 11:14:29,775 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 11:37:02] 2025-12-13 11:14:29,775 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 11:37:02] 2025-12-13 11:14:29,776 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 11:37:02] 2025-12-13 11:14:29,776 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 11:37:02] 2025-12-13 11:14:29,776 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 11:37:02] 2025-12-13 11:14:29,776 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 11:37:02] 2025-12-13 11:14:29,776 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 11:37:02] 2025-12-13 11:14:29,776 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 11:37:02] 2025-12-13 11:14:29,776 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 11:37:02] 2025-12-13 11:14:29,776 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 11:37:02] 2025-12-13 11:14:29,776 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 11:37:02] 2025-12-13 11:14:29,776 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 11:37:02] 2025-12-13 11:14:29,776 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 11:37:02] 2025-12-13 11:14:29,777 | INFO     | job 6928965133 has completed (purged errors)
[2025-12-13 11:37:02] 2025-12-13 11:14:29,777 | INFO     | overall cleanup function is called
[2025-12-13 11:37:02] 2025-12-13 11:14:30,786 | INFO     | --- collectZombieJob: --- 10, [322166]
[2025-12-13 11:37:02] 2025-12-13 11:14:30,786 | INFO     | zombie collector waiting for pid 322166
[2025-12-13 11:37:02] 2025-12-13 11:14:30,786 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 11:37:02] 2025-12-13 11:14:30,786 | INFO     | collected zombie processes
[2025-12-13 11:37:02] 2025-12-13 11:14:30,786 | INFO     | will attempt to kill all subprocesses of pid=322166
[2025-12-13 11:37:02] 2025-12-13 11:14:32,196 | INFO     | process IDs to be killed: [322166] (in reverse order)
[2025-12-13 11:37:02] 2025-12-13 11:14:32,775 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 11:37:02] 2025-12-13 11:14:32,775 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 11:37:02] 2025-12-13 11:14:32,787 | INFO     | did not find any defunct processes belonging to 322166
[2025-12-13 11:37:02] 2025-12-13 11:14:32,799 | INFO     | did not find any defunct processes belonging to 322166
[2025-12-13 11:37:02] 2025-12-13 11:14:32,800 | INFO     | ready for new job
[2025-12-13 11:37:02] 2025-12-13 11:14:32,800 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 11:37:02] 2025-12-13 11:14:32,802 | INFO     | ***************************************
[2025-12-13 11:37:02] 2025-12-13 11:14:32,803 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 11:37:02] 2025-12-13 11:14:32,803 | INFO     | ***************************************
[2025-12-13 11:37:02] 2025-12-13 11:14:32,803 | INFO     | 
[2025-12-13 11:37:02] 2025-12-13 11:14:32,810 | INFO     | architecture information:
[2025-12-13 11:37:02] 2025-12-13 11:14:32,834 | INFO     | executing command: cat /etc/os-release
[2025-12-13 11:37:02] 2025-12-13 11:14:32,856 | INFO     | cat /etc/os-release:
[2025-12-13 11:37:02] NAME="CentOS Linux"
[2025-12-13 11:37:02] VERSION="7 (Core)"
[2025-12-13 11:37:02] ID="centos"
[2025-12-13 11:37:02] ID_LIKE="rhel fedora"
[2025-12-13 11:37:02] VERSION_ID="7"
[2025-12-13 11:37:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 11:37:02] ANSI_COLOR="0;31"
[2025-12-13 11:37:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 11:37:02] HOME_URL="https://www.centos.org/"
[2025-12-13 11:37:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 11:37:02] 
[2025-12-13 11:37:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 11:37:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 11:37:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 11:37:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 11:37:02] 
[2025-12-13 11:37:02] 2025-12-13 11:14:32,856 | INFO     | ***************************************
[2025-12-13 11:37:02] 2025-12-13 11:14:33,360 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-12-13 11:37:02] 2025-12-13 11:14:33,385 | INFO     | sufficient remaining disk space (72726085632 B)
[2025-12-13 11:37:02] 2025-12-13 11:14:33,385 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 11:37:02] 2025-12-13 11:14:33,385 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 11:37:02] 2025-12-13 11:14:33,385 | INFO     | update_server=False
[2025-12-13 11:37:02] 2025-12-13 11:14:33,385 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 11:37:02] 2025-12-13 11:14:33,568 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-13 11:37:02] 2025-12-13 11:14:33,568 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-13 11:37:02] 2025-12-13 11:14:33,569 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 11:37:02] 2025-12-13 11:14:33,569 | INFO     | will abort loop
[2025-12-13 11:37:02] 2025-12-13 11:14:33,942 | INFO     | all payload control threads have been joined
[2025-12-13 11:37:02] 2025-12-13 11:14:34,005 | INFO     | all job control threads have been joined
[2025-12-13 11:37:02] 2025-12-13 11:14:34,043 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 11:37:02] 2025-12-13 11:14:34,308 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 11:37:02] 2025-12-13 11:14:34,358 | INFO     | all data control threads have been joined
[2025-12-13 11:37:02] 2025-12-13 11:14:34,391 | INFO     | [job] retrieve thread has finished
[2025-12-13 11:37:02] 2025-12-13 11:14:34,571 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 11:37:02] 2025-12-13 11:14:34,574 | INFO     | [job] job monitor thread has finished
[2025-12-13 11:37:02] 2025-12-13 11:14:34,612 | INFO     | [payload] validate_post thread has finished
[2025-12-13 11:37:02] 2025-12-13 11:14:34,784 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 11:37:02] 2025-12-13 11:14:34,785 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 11:37:02] 2025-12-13 11:14:34,787 | INFO     | [payload] failed_post thread has finished
[2025-12-13 11:37:02] 2025-12-13 11:14:34,951 | INFO     | [payload] control thread has finished
[2025-12-13 11:37:02] 2025-12-13 11:14:35,015 | INFO     | [job] control thread has finished
[2025-12-13 11:37:02] 2025-12-13 11:14:35,228 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 11:37:02] 2025-12-13 11:14:35,299 | INFO     | [job] validate thread has finished
[2025-12-13 11:37:02] 2025-12-13 11:14:35,366 | INFO     | [data] control thread has finished
[2025-12-13 11:37:02] 2025-12-13 11:14:35,584 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 11:37:02] 2025-12-13 11:14:35,814 | INFO     | [job] queue monitor thread has finished
[2025-12-13 11:37:02] 2025-12-13 11:14:35,872 | INFO     | [data] copytool_in thread has finished
[2025-12-13 11:37:02] 2025-12-13 11:14:36,050 | INFO     | [data] copytool_out thread has finished
[2025-12-13 11:37:02] 2025-12-13 11:14:38,317 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 11:37:02] 2025-12-13 11:14:43,711 [wrapper] supervise_pilot (15 min periods counter: 25)
[2025-12-13 11:37:02] 2025-12-13 11:15:02,401 | INFO     | PID=289797 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-13 11:37:02] 2025-12-13 11:15:02,401 | INFO     | .. there are 13 such processes running
[2025-12-13 11:37:02] 2025-12-13 11:15:02,401 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 11:37:02] 2025-12-13 11:15:02,401 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 11:37:02] 2025-12-13 11:15:02,401 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 11:37:02] 2025-12-13 11:15:28,202 | INFO     | [monitor] cgroup control has ended
[2025-12-13 11:37:02] 2025-12-13 11:15:28,271 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140099706779456)>', '<ExcThread(monitor, started 140099039766272)>']
[2025-12-13 11:37:02] 2025-12-13 11:15:28,577 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 11:37:02] 2025-12-13 11:15:28,578 | INFO     | [monitor] control thread has ended
[2025-12-13 11:37:02] 2025-12-13 11:15:33,298 | INFO     | all workflow threads have been joined
[2025-12-13 11:37:02] 2025-12-13 11:15:33,299 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 11:37:02] 2025-12-13 11:15:33,299 | INFO     | traces error code: 0
[2025-12-13 11:37:02] 2025-12-13 11:15:33,299 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 11:37:02] 2025-12-13 11:15:33,631 [wrapper] ==== pilot stdout END ====
[2025-12-13 11:37:02] 2025-12-13 11:15:33,634 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 11:37:02] 2025-12-13 11:15:33,637 [wrapper] pilotpid: 289797
[2025-12-13 11:37:02] 2025-12-13 11:15:33,639 [wrapper] Pilot exit status: 0
[2025-12-13 11:37:02] 2025-12-13 11:15:33,754 [wrapper] pandaids: 6928965133
[2025-12-13 11:37:02] 2025-12-13 11:15:34,109 [wrapper] cleanup supervisor_pilot  906310 289799
[2025-12-13 11:37:02] 2025-12-13 11:15:34,113 [wrapper] Test setup, not cleaning
[2025-12-13 11:37:02] 2025-12-13 11:15:34,115 [wrapper] apfmon messages muted
[2025-12-13 11:37:02] 2025-12-13 11:15:34,118 [wrapper] ==== wrapper stdout END ====
[2025-12-13 11:37:02] 2025-12-13 11:15:34,121 [wrapper] ==== wrapper stderr END ====
[2025-12-13 11:37:02]  *** Error codes and diagnostics ***
[2025-12-13 11:37:02]     "exeErrorCode": 0,
[2025-12-13 11:37:02]     "exeErrorDiag": "",
[2025-12-13 11:37:02]     "pilotErrorCode": 0,
[2025-12-13 11:37:02]     "pilotErrorDiag": "",
[2025-12-13 11:37:02]  *** Listing of results directory ***
[2025-12-13 11:37:02] total 411020
[2025-12-13 11:37:02] -rw-r--r--. 1 boincer umatlas    579449 Dec 12 23:45 pilot3.tar.gz
[2025-12-13 11:37:02] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 00:02 queuedata.json
[2025-12-13 11:37:02] -rwx------. 1 boincer umatlas     36322 Dec 13 00:03 runpilot2-wrapper.sh
[2025-12-13 11:37:02] -rw-r--r--. 1 boincer umatlas       100 Dec 13 00:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 11:37:02] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 13 00:13 run_atlas
[2025-12-13 11:37:02] -rw-r--r--. 1 boincer umatlas       105 Dec 13 00:13 job.xml
[2025-12-13 11:37:02] -rw-r--r--. 2 boincer umatlas 212228606 Dec 13 00:13 EVNT.47898779._000035.pool.root.1
[2025-12-13 11:37:02] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 00:13 start_atlas.sh
[2025-12-13 11:37:02] drwxrwx--x. 2 boincer umatlas      4096 Dec 13 00:13 shared
[2025-12-13 11:37:02] -rw-r--r--. 2 boincer umatlas    592388 Dec 13 00:13 input.tar.gz
[2025-12-13 11:37:02] -rw-r--r--. 1 boincer umatlas         0 Dec 13 00:13 boinc_lockfile
[2025-12-13 11:37:02] -rw-r--r--. 1 boincer umatlas      2519 Dec 13 00:13 pandaJob.out
[2025-12-13 11:37:02] -rw-------. 1 boincer umatlas        57 Dec 13 00:13 setup.sh.local
[2025-12-13 11:37:02] -rw-------. 1 boincer umatlas    991736 Dec 13 00:14 agis_schedconf.cvmfs.json
[2025-12-13 11:37:02] drwx------. 5 boincer umatlas      4096 Dec 13 00:14 pilot3
[2025-12-13 11:37:02] -rw-------. 1 boincer umatlas 198153015 Dec 13 06:08 HITS.47898782._000370.pool.root.1
[2025-12-13 11:37:02] -rw-r--r--. 1 boincer umatlas       530 Dec 13 06:08 boinc_task_state.xml
[2025-12-13 11:37:02] -rw-------. 1 boincer umatlas      1041 Dec 13 06:14 memory_monitor_summary.json
[2025-12-13 11:37:02] -rw-------. 1 boincer umatlas   1516240 Dec 13 06:14 agis_ddmendpoints.agis.ALL.json
[2025-12-13 11:37:02] -rw-------. 1 boincer umatlas    559597 Dec 13 06:14 log.47898782._000370.job.log.tgz.1
[2025-12-13 11:37:02] -rw-------. 1 boincer umatlas        95 Dec 13 06:14 pilot_heartbeat.json
[2025-12-13 11:37:02] -rw-------. 1 boincer umatlas      7831 Dec 13 06:14 heartbeat.json
[2025-12-13 11:37:02] -rw-------. 1 boincer umatlas      5009 Dec 13 06:15 pilotlog.txt
[2025-12-13 11:37:02] -rw-------. 1 boincer umatlas   2732783 Dec 13 06:15 log.47898782._000370.job.log.1
[2025-12-13 11:37:02] -rw-------. 1 boincer umatlas       357 Dec 13 06:15 output.list
[2025-12-13 11:37:02] -rw-r--r--. 1 boincer umatlas       620 Dec 13 06:15 runtime_log
[2025-12-13 11:37:02] -rw-------. 1 boincer umatlas   3307520 Dec 13 06:15 result.tar.gz
[2025-12-13 11:37:02] -rw-------. 1 boincer umatlas       658 Dec 13 06:15 T1zLDmixWo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5pNKDmeLDGSm.diag
[2025-12-13 11:37:02] -rw-r--r--. 1 boincer umatlas      9353 Dec 13 06:15 runtime_log.err
[2025-12-13 11:37:02] -rw-r--r--. 1 boincer umatlas        27 Dec 13 11:36 wrapper_checkpoint.txt
[2025-12-13 11:37:02] -rw-r--r--. 1 boincer umatlas      6843 Dec 13 11:37 init_data.xml
[2025-12-13 11:37:02] -rw-r--r--. 1 boincer umatlas      8192 Dec 13 11:37 boinc_mmap_file
[2025-12-13 11:37:02] -rw-r--r--. 1 boincer umatlas     21207 Dec 13 11:37 stderr.txt
[2025-12-13 11:37:02] HITS file was successfully produced:
[2025-12-13 11:37:02] -rw-------. 1 boincer umatlas 198153015 Dec 13 06:08 shared/HITS.pool.root.1
[2025-12-13 11:37:02]  *** Contents of shared directory: ***
[2025-12-13 11:37:02] total 404600
[2025-12-13 11:37:02] -rw-r--r--. 2 boincer umatlas 212228606 Dec 13 00:13 ATLAS.root_0
[2025-12-13 11:37:02] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 00:13 start_atlas.sh
[2025-12-13 11:37:02] -rw-r--r--. 2 boincer umatlas    592388 Dec 13 00:13 input.tar.gz
[2025-12-13 11:37:02] -rw-------. 1 boincer umatlas 198153015 Dec 13 06:08 HITS.pool.root.1
[2025-12-13 11:37:02] -rw-------. 1 boincer umatlas   3307520 Dec 13 06:15 result.tar.gz
11:37:04 (275162): run_atlas exited; CPU time 64383.376734
11:37:04 (275162): called boinc_finish(0)

</stderr_txt>
]]>

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