Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:10:07 (76788): wrapper (7.7.26015): starting
00:10:07 (76788): wrapper: running run_atlas (--nthreads 9)
[2025-12-13 00:10:07] Arguments: --nthreads 9
[2025-12-13 00:10:07] Threads: 9
[2025-12-13 00:10:07] Checking for CVMFS
[2025-12-13 00:10:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 00:10:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 00:10:09] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 00:10:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 00:10:12] 2.13.3.0 8702 53954 376288 153949 1 202 13856624 21042177 21875 16776704 0 222811457 99.388 324908968 32103 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-13 00:10:12] CVMFS is ok
[2025-12-13 00:10:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 00:10:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 00:10:12] Further information can be found at the LHC@home message board.
[2025-12-13 00:10:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 00:10:12] Checking for apptainer binary...
[2025-12-13 00:10:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 00:10:12] Running /usr/bin/apptainer --version
[2025-12-13 00:10:13] apptainer version 1.4.4-1.el9
[2025-12-13 00:10:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 00:10:15] c-16-12.aglt2.org
[2025-12-13 00:10:15] apptainer works
[2025-12-13 00:10:15] Set ATHENA_PROC_NUMBER=9
[2025-12-13 00:10:15] Set ATHENA_CORE_NUMBER=9
[2025-12-13 00:10:16] Starting ATLAS job with PandaID=6928966195
[2025-12-13 00:10:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 07:37:59]  *** The last 200 lines of the pilot log: ***
[2025-12-14 07:37:59] 2025-12-14 12:37:06,105 | INFO     | sum of square deviations: 1937886709069.4788
[2025-12-14 07:37:59] 2025-12-14 12:37:07,040 | INFO     | monitor loop #3630: job 0:6928966195 is in state 'finished'
[2025-12-14 07:37:59] 2025-12-14 12:37:07,044 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 07:37:59] 2025-12-14 12:37:08,760 | INFO     | sum of deviations: 3578154689542.856
[2025-12-14 07:37:59] 2025-12-14 12:37:08,760 | INFO     | mean x: 1765659289.7687297
[2025-12-14 07:37:59] 2025-12-14 12:37:08,761 | INFO     | mean y: 2534036.178067318
[2025-12-14 07:37:59] 2025-12-14 12:37:08,761 | INFO     | intersect: -3257616331.8764863
[2025-12-14 07:37:59] 2025-12-14 12:37:08,763 | INFO     | chi2: 8.578085562563441
[2025-12-14 07:37:59] 2025-12-14 12:37:08,763 | INFO     | current chi2=8.578085562563441 (change=7.414189156604592 %)
[2025-12-14 07:37:59] 2025-12-14 12:37:08,764 | INFO     | right removable region: 1841
[2025-12-14 07:37:59] 2025-12-14 12:37:08,878 | INFO     | sum of square deviations: 1937884609206.5505
[2025-12-14 07:37:59] 2025-12-14 12:37:09,719 | INFO     | monitor loop #3631: job 0:6928966195 is in state 'finished'
[2025-12-14 07:37:59] 2025-12-14 12:37:09,719 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 07:37:59] 2025-12-14 12:37:10,017 | INFO     | sum of deviations: 2830630095214.548
[2025-12-14 07:37:59] 2025-12-14 12:37:10,017 | INFO     | mean x: 1765659594.767644
[2025-12-14 07:37:59] 2025-12-14 12:37:10,017 | INFO     | mean y: 2539236.0830618893
[2025-12-14 07:37:59] 2025-12-14 12:37:10,018 | INFO     | intersect: -2576525153.566007
[2025-12-14 07:37:59] 2025-12-14 12:37:10,045 | INFO     | chi2: 5.091998712179814
[2025-12-14 07:37:59] 2025-12-14 12:37:10,046 | INFO     | current chi2=5.091998712179814 (change=45.04055407908429 %)
[2025-12-14 07:37:59] 2025-12-14 12:37:10,075 | INFO     | sum of square deviations: 1922145174260.9944
[2025-12-14 07:37:59] 2025-12-14 12:37:11,586 | INFO     | sum of deviations: 2353898109174.995
[2025-12-14 07:37:59] 2025-12-14 12:37:11,586 | INFO     | mean x: 1765659747.271094
[2025-12-14 07:37:59] 2025-12-14 12:37:11,586 | INFO     | mean y: 2543854.787152967
[2025-12-14 07:37:59] 2025-12-14 12:37:11,587 | INFO     | intersect: -2159719014.949392
[2025-12-14 07:37:59] 2025-12-14 12:37:11,632 | INFO     | chi2: 2.876648711391038
[2025-12-14 07:37:59] 2025-12-14 12:37:11,633 | INFO     | current chi2=2.876648711391038 (change=43.50649177286252 %)
[2025-12-14 07:37:59] 2025-12-14 12:37:11,635 | INFO     | sum of square deviations: 1906491630034.08
[2025-12-14 07:37:59] 2025-12-14 12:37:12,367 | INFO     | monitor loop #3632: job 0:6928966195 is in state 'finished'
[2025-12-14 07:37:59] 2025-12-14 12:37:12,543 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 07:37:59] 2025-12-14 12:37:13,667 | INFO     | sum of deviations: 2008405009424.3638
[2025-12-14 07:37:59] 2025-12-14 12:37:13,667 | INFO     | mean x: 1765659899.7723799
[2025-12-14 07:37:59] 2025-12-14 12:37:13,668 | INFO     | mean y: 2547220.003275109
[2025-12-14 07:37:59] 2025-12-14 12:37:13,668 | INFO     | intersect: -1857497760.9333458
[2025-12-14 07:37:59] 2025-12-14 12:37:13,697 | INFO     | chi2: 1.7304253421424312
[2025-12-14 07:37:59] 2025-12-14 12:37:13,698 | INFO     | current chi2=1.7304253421424312 (change=39.845788771835714 %)
[2025-12-14 07:37:59] 2025-12-14 12:37:13,700 | INFO     | sum of square deviations: 1890923408708.7114
[2025-12-14 07:37:59] 2025-12-14 12:37:14,324 | INFO     | sum of deviations: 1822807261517.036
[2025-12-14 07:37:59] 2025-12-14 12:37:14,324 | INFO     | mean x: 1765660052.2731254
[2025-12-14 07:37:59] 2025-12-14 12:37:14,324 | INFO     | mean y: 2549037.827586207
[2025-12-14 07:37:59] 2025-12-14 12:37:14,324 | INFO     | intersect: -1699507190.2730792
[2025-12-14 07:37:59] 2025-12-14 12:37:14,335 | INFO     | chi2: 1.4256189283292537
[2025-12-14 07:37:59] 2025-12-14 12:37:14,336 | INFO     | current chi2=1.4256189283292537 (change=17.614537096168394 %)
[2025-12-14 07:37:59] 2025-12-14 12:37:14,336 | INFO     | left removable region: 40
[2025-12-14 07:37:59] 2025-12-14 12:37:14,365 | INFO     | sum of square deviations: 1811339167883.8208
[2025-12-14 07:37:59] 2025-12-14 12:37:15,138 | INFO     | monitor loop #3633: job 0:6928966195 is in state 'finished'
[2025-12-14 07:37:59] 2025-12-14 12:37:15,138 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 07:37:59] 2025-12-14 12:37:15,539 | INFO     | sum of deviations: 1542464267165.735
[2025-12-14 07:37:59] 2025-12-14 12:37:15,540 | INFO     | mean x: 1765660479.2615213
[2025-12-14 07:37:59] 2025-12-14 12:37:15,540 | INFO     | mean y: 2553926.8922820655
[2025-12-14 07:37:59] 2025-12-14 12:37:15,540 | INFO     | intersect: -1501012188.9939208
[2025-12-14 07:37:59] 2025-12-14 12:37:15,543 | INFO     | chi2: 0.3801081024917012
[2025-12-14 07:37:59] 2025-12-14 12:37:15,591 | INFO     | current memory leak: 0.85 B/s (using 1801 data points, chi2=0.38)
[2025-12-14 07:37:59] 2025-12-14 12:37:15,593 | INFO     | could have reported an average CPU frequency of 2899 MHz (63 samples)
[2025-12-14 07:37:59] 2025-12-14 12:37:15,593 | INFO     | ..............................
[2025-12-14 07:37:59] 2025-12-14 12:37:15,593 | INFO     | . Timing measurements:
[2025-12-14 07:37:59] 2025-12-14 12:37:15,594 | INFO     | . get job = 1 s
[2025-12-14 07:37:59] 2025-12-14 12:37:15,594 | INFO     | . initial setup = 15 s
[2025-12-14 07:37:59] 2025-12-14 12:37:15,594 | INFO     | . payload setup = 91 s
[2025-12-14 07:37:59] 2025-12-14 12:37:15,594 | INFO     | . stage-in = 1 s
[2025-12-14 07:37:59] 2025-12-14 12:37:15,594 | INFO     | . payload execution = 112697 s
[2025-12-14 07:37:59] 2025-12-14 12:37:15,594 | INFO     | . stage-out = 9 s
[2025-12-14 07:37:59] 2025-12-14 12:37:15,594 | INFO     | . log creation = 0 s
[2025-12-14 07:37:59] 2025-12-14 12:37:15,594 | INFO     | ..............................
[2025-12-14 07:37:59] 2025-12-14 12:37:19,826 | INFO     | 
[2025-12-14 07:37:59] 2025-12-14 12:37:19,826 | INFO     | job summary report
[2025-12-14 07:37:59] 2025-12-14 12:37:19,826 | INFO     | --------------------------------------------------
[2025-12-14 07:37:59] 2025-12-14 12:37:19,827 | INFO     | PanDA job id: 6928966195
[2025-12-14 07:37:59] 2025-12-14 12:37:19,827 | INFO     | task id: 47898782
[2025-12-14 07:37:59] 2025-12-14 12:37:19,827 | INFO     | errors: (none)
[2025-12-14 07:37:59] 2025-12-14 12:37:19,827 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 07:37:59] 2025-12-14 12:37:19,827 | INFO     | pilot state: finished 
[2025-12-14 07:37:59] 2025-12-14 12:37:19,827 | INFO     | transexitcode: 0
[2025-12-14 07:37:59] 2025-12-14 12:37:19,828 | INFO     | exeerrorcode: 0
[2025-12-14 07:37:59] 2025-12-14 12:37:19,828 | INFO     | exeerrordiag: 
[2025-12-14 07:37:59] 2025-12-14 12:37:19,828 | INFO     | exitcode: 0
[2025-12-14 07:37:59] 2025-12-14 12:37:19,828 | INFO     | exitmsg: OK
[2025-12-14 07:37:59] 2025-12-14 12:37:19,828 | INFO     | cpuconsumptiontime: 114222 s
[2025-12-14 07:37:59] 2025-12-14 12:37:19,828 | INFO     | nevents: 400
[2025-12-14 07:37:59] 2025-12-14 12:37:19,829 | INFO     | neventsw: 0
[2025-12-14 07:37:59] 2025-12-14 12:37:19,829 | INFO     | pid: 134853
[2025-12-14 07:37:59] 2025-12-14 12:37:19,829 | INFO     | pgrp: 134853
[2025-12-14 07:37:59] 2025-12-14 12:37:19,829 | INFO     | corecount: 9
[2025-12-14 07:37:59] 2025-12-14 12:37:19,829 | INFO     | event service: False
[2025-12-14 07:37:59] 2025-12-14 12:37:19,829 | INFO     | sizes: {0: 2283146, 1: 2283747, 2: 2283831, 3: 2283859, 5: 2283887, 6: 2284270, 18: 2284270, 32: 2284298, 43: 2284326, 58: 2284354, 72: 2284438, 75: 2284952, 87: 2
[2025-12-14 07:37:59] 2025-12-14 12:37:19,829 | INFO     | --------------------------------------------------
[2025-12-14 07:37:59] 2025-12-14 12:37:19,830 | INFO     | 
[2025-12-14 07:37:59] 2025-12-14 12:37:19,842 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-14 07:37:59] 2025-12-14 12:37:20,164 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 07:37:59] 2025-12-14 12:37:20,165 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 07:37:59] 2025-12-14 12:37:20,165 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 07:37:59] 2025-12-14 12:37:20,165 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 07:37:59] 2025-12-14 12:37:20,165 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 07:37:59] 2025-12-14 12:37:20,166 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 07:37:59] 2025-12-14 12:37:20,166 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 07:37:59] 2025-12-14 12:37:20,166 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 07:37:59] 2025-12-14 12:37:20,166 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 07:37:59] 2025-12-14 12:37:20,166 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 07:37:59] 2025-12-14 12:37:20,166 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 07:37:59] 2025-12-14 12:37:20,166 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 07:37:59] 2025-12-14 12:37:20,166 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 07:37:59] 2025-12-14 12:37:20,167 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 07:37:59] 2025-12-14 12:37:20,167 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 07:37:59] 2025-12-14 12:37:20,167 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 07:37:59] 2025-12-14 12:37:20,167 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 07:37:59] 2025-12-14 12:37:20,167 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 07:37:59] 2025-12-14 12:37:20,167 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 07:37:59] 2025-12-14 12:37:20,167 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 07:37:59] 2025-12-14 12:37:20,306 | INFO     | job 6928966195 has completed (purged errors)
[2025-12-14 07:37:59] 2025-12-14 12:37:20,306 | INFO     | overall cleanup function is called
[2025-12-14 07:37:59] 2025-12-14 12:37:20,528 | INFO     | PID=91690 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 07:37:59] 2025-12-14 12:37:20,528 | INFO     | .. there are 20 such processes running
[2025-12-14 07:37:59] 2025-12-14 12:37:21,321 | INFO     | --- collectZombieJob: --- 10, [134853]
[2025-12-14 07:37:59] 2025-12-14 12:37:21,321 | INFO     | zombie collector waiting for pid 134853
[2025-12-14 07:37:59] 2025-12-14 12:37:21,321 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 07:37:59] 2025-12-14 12:37:21,322 | INFO     | collected zombie processes
[2025-12-14 07:37:59] 2025-12-14 12:37:21,322 | INFO     | will attempt to kill all subprocesses of pid=134853
[2025-12-14 07:37:59] 2025-12-14 12:37:25,215 | INFO     | process IDs to be killed: [134853] (in reverse order)
[2025-12-14 07:37:59] 2025-12-14 12:37:25,539 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 07:37:59] 2025-12-14 12:37:25,540 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 07:37:59] 2025-12-14 12:37:25,583 | INFO     | did not find any defunct processes belonging to 134853
[2025-12-14 07:37:59] 2025-12-14 12:37:25,633 | INFO     | did not find any defunct processes belonging to 134853
[2025-12-14 07:37:59] 2025-12-14 12:37:25,633 | INFO     | ready for new job
[2025-12-14 07:37:59] 2025-12-14 12:37:25,634 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 07:37:59] 2025-12-14 12:37:25,648 | INFO     | ***************************************
[2025-12-14 07:37:59] 2025-12-14 12:37:25,648 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 07:37:59] 2025-12-14 12:37:25,648 | INFO     | ***************************************
[2025-12-14 07:37:59] 2025-12-14 12:37:25,648 | INFO     | 
[2025-12-14 07:37:59] 2025-12-14 12:37:25,650 | INFO     | architecture information:
[2025-12-14 07:37:59] 2025-12-14 12:37:25,655 | INFO     | executing command: cat /etc/os-release
[2025-12-14 07:37:59] 2025-12-14 12:37:25,713 | INFO     | cat /etc/os-release:
[2025-12-14 07:37:59] NAME="CentOS Linux"
[2025-12-14 07:37:59] VERSION="7 (Core)"
[2025-12-14 07:37:59] ID="centos"
[2025-12-14 07:37:59] ID_LIKE="rhel fedora"
[2025-12-14 07:37:59] VERSION_ID="7"
[2025-12-14 07:37:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 07:37:59] ANSI_COLOR="0;31"
[2025-12-14 07:37:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 07:37:59] HOME_URL="https://www.centos.org/"
[2025-12-14 07:37:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 07:37:59] 
[2025-12-14 07:37:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 07:37:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 07:37:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 07:37:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 07:37:59] 
[2025-12-14 07:37:59] 2025-12-14 12:37:25,714 | INFO     | ***************************************
[2025-12-14 07:37:59] 2025-12-14 12:37:26,216 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-14 07:37:59] 2025-12-14 12:37:26,390 | INFO     | sufficient remaining disk space (52693041152 B)
[2025-12-14 07:37:59] 2025-12-14 12:37:26,391 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 07:37:59] 2025-12-14 12:37:26,391 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 07:37:59] 2025-12-14 12:37:26,391 | INFO     | update_server=False
[2025-12-14 07:37:59] 2025-12-14 12:37:26,391 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 07:37:59] 2025-12-14 12:37:26,602 | INFO     | all data control threads have been joined
[2025-12-14 07:37:59] 2025-12-14 12:37:26,635 | INFO     | all payload control threads have been joined
[2025-12-14 07:37:59] 2025-12-14 12:37:26,998 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 07:37:59] 2025-12-14 12:37:26,998 | INFO     | aborting loop
[2025-12-14 07:37:59] 2025-12-14 12:37:27,176 | INFO     | all job control threads have been joined
[2025-12-14 07:37:59] 2025-12-14 12:37:27,428 | INFO     | [job] retrieve thread has finished
[2025-12-14 07:37:59] 2025-12-14 12:37:27,491 | INFO     | [payload] failed_post thread has finished
[2025-12-14 07:37:59] 2025-12-14 12:37:27,626 | INFO     | [data] control thread has finished
[2025-12-14 07:37:59] 2025-12-14 12:37:27,627 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 07:37:59] 2025-12-14 12:37:27,634 | INFO     | [data] copytool_in thread has finished
[2025-12-14 07:37:59] 2025-12-14 12:37:27,635 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 07:37:59] 2025-12-14 12:37:27,641 | INFO     | [payload] control thread has finished
[2025-12-14 07:37:59] 2025-12-14 12:37:27,683 | INFO     | [job] validate thread has finished
[2025-12-14 07:37:59] 2025-12-14 12:37:27,827 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 07:37:59] 2025-12-14 12:37:27,878 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 07:37:59] 2025-12-14 12:37:28,004 | INFO     | [job] job monitor thread has finished
[2025-12-14 07:37:59] 2025-12-14 12:37:28,182 | INFO     | [job] control thread has finished
[2025-12-14 07:37:59] 2025-12-14 12:37:28,310 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 07:37:59] 2025-12-14 12:37:28,758 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 07:37:59] 2025-12-14 12:37:28,846 | INFO     | [payload] validate_post thread has finished
[2025-12-14 07:37:59] 2025-12-14 12:37:29,150 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 07:37:59] 2025-12-14 12:37:29,766 | INFO     | [job] queue monitor thread has finished
[2025-12-14 07:37:59] 2025-12-14 12:37:29,885 | INFO     | [data] copytool_out thread has finished
[2025-12-14 07:37:59] 2025-12-14 12:37:33,158 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 07:37:59] 2025-12-14 12:37:46,147 | INFO     | [monitor] cgroup control has ended
[2025-12-14 07:37:59] 2025-12-14 12:37:47,100 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139677476833088)>', '<ExcThread(monitor, started 139676522358528)>']
[2025-12-14 07:37:59] 2025-12-14 12:37:52,156 | INFO     | all workflow threads have been joined
[2025-12-14 07:37:59] 2025-12-14 12:37:52,156 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 07:37:59] 2025-12-14 12:37:52,157 | INFO     | traces error code: 0
[2025-12-14 07:37:59] 2025-12-14 12:37:52,157 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 07:37:59] 2025-12-14 12:37:55,892 | INFO     | PID=91690 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 07:37:59] 2025-12-14 12:37:55,922 | INFO     | .. there are 20 such processes running
[2025-12-14 07:37:59] 2025-12-14 12:37:55,922 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 07:37:59] 2025-12-14 12:37:55,922 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 07:37:59] 2025-12-14 12:37:55,923 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 07:37:59] 2025-12-14 12:37:55,923 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 07:37:59] 2025-12-14 12:37:55,923 | INFO     | [monitor] control thread has ended
[2025-12-14 07:37:59] 2025-12-14 12:37:57,732 [wrapper] ==== pilot stdout END ====
[2025-12-14 07:37:59] 2025-12-14 12:37:57,735 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 07:37:59] 2025-12-14 12:37:57,738 [wrapper] pilotpid: 91690
[2025-12-14 07:37:59] 2025-12-14 12:37:57,740 [wrapper] Pilot exit status: 0
[2025-12-14 07:37:59] 2025-12-14 12:37:57,872 [wrapper] pandaids: 6928966195
[2025-12-14 07:37:59] 2025-12-14 12:37:58,192 [wrapper] cleanup supervisor_pilot 1610680 91691
[2025-12-14 07:37:59] 2025-12-14 12:37:58,218 [wrapper] Test setup, not cleaning
[2025-12-14 07:37:59] 2025-12-14 12:37:58,255 [wrapper] apfmon messages muted
[2025-12-14 07:37:59] 2025-12-14 12:37:58,314 [wrapper] ==== wrapper stdout END ====
[2025-12-14 07:37:59] 2025-12-14 12:37:58,361 [wrapper] ==== wrapper stderr END ====
[2025-12-14 07:37:59]  *** Error codes and diagnostics ***
[2025-12-14 07:37:59]     "exeErrorCode": 0,
[2025-12-14 07:37:59]     "exeErrorDiag": "",
[2025-12-14 07:37:59]     "pilotErrorCode": 0,
[2025-12-14 07:37:59]     "pilotErrorDiag": "",
[2025-12-14 07:37:59]  *** Listing of results directory ***
[2025-12-14 07:37:59] total 430452
[2025-12-14 07:37:59] -rw-r--r--. 1 boincer umatlas    579449 Dec 12 23:45 pilot3.tar.gz
[2025-12-14 07:37:59] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 00:02 queuedata.json
[2025-12-14 07:37:59] -rwx------. 1 boincer umatlas     36322 Dec 13 00:02 runpilot2-wrapper.sh
[2025-12-14 07:37:59] -rw-r--r--. 1 boincer umatlas       100 Dec 13 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 07:37:59] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 13 00:10 run_atlas
[2025-12-14 07:37:59] -rw-r--r--. 1 boincer umatlas       105 Dec 13 00:10 job.xml
[2025-12-14 07:37:59] -rw-r--r--. 2 boincer umatlas 215459255 Dec 13 00:10 EVNT.47898779._000044.pool.root.1
[2025-12-14 07:37:59] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 00:10 start_atlas.sh
[2025-12-14 07:37:59] drwxrwx--x. 2 boincer umatlas      4096 Dec 13 00:10 shared
[2025-12-14 07:37:59] -rw-r--r--. 2 boincer umatlas    592389 Dec 13 00:10 input.tar.gz
[2025-12-14 07:37:59] -rw-r--r--. 1 boincer umatlas         0 Dec 13 00:10 boinc_lockfile
[2025-12-14 07:37:59] -rw-r--r--. 1 boincer umatlas      2519 Dec 13 00:10 pandaJob.out
[2025-12-14 07:37:59] -rw-------. 1 boincer umatlas        57 Dec 13 00:10 setup.sh.local
[2025-12-14 07:37:59] -rw-------. 1 boincer umatlas    991736 Dec 13 00:13 agis_schedconf.cvmfs.json
[2025-12-14 07:37:59] drwx------. 5 boincer umatlas      4096 Dec 13 00:13 pilot3
[2025-12-14 07:37:59] -rw-r--r--. 1 boincer umatlas      6523 Dec 14 07:31 init_data.xml
[2025-12-14 07:37:59] -rw-------. 1 boincer umatlas 199773561 Dec 14 07:34 HITS.47898782._000580.pool.root.1
[2025-12-14 07:37:59] -rw-r--r--. 1 boincer umatlas       532 Dec 14 07:34 boinc_task_state.xml
[2025-12-14 07:37:59] -rw-------. 1 boincer umatlas      1039 Dec 14 07:35 memory_monitor_summary.json
[2025-12-14 07:37:59] -rw-------. 1 boincer umatlas   1516240 Dec 14 07:36 agis_ddmendpoints.agis.ALL.json
[2025-12-14 07:37:59] -rw-------. 1 boincer umatlas   1365333 Dec 14 07:36 log.47898782._000580.job.log.tgz.1
[2025-12-14 07:37:59] -rw-------. 1 boincer umatlas      7819 Dec 14 07:37 heartbeat.json
[2025-12-14 07:37:59] -rw-------. 1 boincer umatlas        95 Dec 14 07:37 pilot_heartbeat.json
[2025-12-14 07:37:59] -rw-r--r--. 1 boincer umatlas      8192 Dec 14 07:37 boinc_mmap_file
[2025-12-14 07:37:59] -rw-r--r--. 1 boincer umatlas        29 Dec 14 07:37 wrapper_checkpoint.txt
[2025-12-14 07:37:59] -rw-------. 1 boincer umatlas       821 Dec 14 07:37 pilotlog.txt
[2025-12-14 07:37:59] -rw-------. 1 boincer umatlas   9453163 Dec 14 07:37 log.47898782._000580.job.log.1
[2025-12-14 07:37:59] -rw-------. 1 boincer umatlas       357 Dec 14 07:37 output.list
[2025-12-14 07:37:59] -rw-r--r--. 1 boincer umatlas       620 Dec 14 07:37 runtime_log
[2025-12-14 07:37:59] -rw-------. 1 boincer umatlas  10833920 Dec 14 07:37 result.tar.gz
[2025-12-14 07:37:59] -rw-r--r--. 1 boincer umatlas      9339 Dec 14 07:37 runtime_log.err
[2025-12-14 07:37:59] -rw-------. 1 boincer umatlas       661 Dec 14 07:37 Lc2NDmRxWo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAmRKDm53rh5m.diag
[2025-12-14 07:37:59] -rw-r--r--. 1 boincer umatlas     21456 Dec 14 07:37 stderr.txt
[2025-12-14 07:37:59] HITS file was successfully produced:
[2025-12-14 07:37:59] -rw-------. 1 boincer umatlas 199773561 Dec 14 07:34 shared/HITS.pool.root.1
[2025-12-14 07:37:59]  *** Contents of shared directory: ***
[2025-12-14 07:37:59] total 416688
[2025-12-14 07:37:59] -rw-r--r--. 2 boincer umatlas 215459255 Dec 13 00:10 ATLAS.root_0
[2025-12-14 07:37:59] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 00:10 start_atlas.sh
[2025-12-14 07:37:59] -rw-r--r--. 2 boincer umatlas    592389 Dec 13 00:10 input.tar.gz
[2025-12-14 07:37:59] -rw-------. 1 boincer umatlas 199773561 Dec 14 07:34 HITS.pool.root.1
[2025-12-14 07:37:59] -rw-------. 1 boincer umatlas  10833920 Dec 14 07:37 result.tar.gz
07:38:01 (76788): run_atlas exited; CPU time 118902.050768
07:38:01 (76788): called boinc_finish(0)

</stderr_txt>
]]>

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