Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:11:52 (1588150): wrapper (7.7.26015): starting
00:11:52 (1588150): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 00:11:52] Arguments: --nthreads 8
[2025-12-13 00:11:52] Threads: 8
[2025-12-13 00:11:52] Checking for CVMFS
[2025-12-13 00:11:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 00:11:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 00:11:55] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 00:11:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 00:11:57] 2.13.2.0 9432 57885 243412 153949 1 80 22985224 39288833 8997 16776704 0 44956226 99.684 40836886 40099 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 00:11:57] CVMFS is ok
[2025-12-13 00:11:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 00:11:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 00:11:57] Further information can be found at the LHC@home message board.
[2025-12-13 00:11:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 00:11:57] Checking for apptainer binary...
[2025-12-13 00:11:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 00:11:57] Running /usr/bin/apptainer --version
[2025-12-13 00:11:57] apptainer version 1.4.4-1.el9
[2025-12-13 00:11:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 00:11:58] c-211-5.aglt2.org
[2025-12-13 00:11:58] apptainer works
[2025-12-13 00:11:58] Set ATHENA_PROC_NUMBER=8
[2025-12-13 00:11:58] Set ATHENA_CORE_NUMBER=8
[2025-12-13 00:11:58] Starting ATLAS job with PandaID=6926944336
[2025-12-13 00:11:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 14:21:39]  *** The last 200 lines of the pilot log: ***
[2025-12-13 14:21:39] 2025-12-13 19:20:45,435 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 14:21:39] 2025-12-13 19:20:46,066 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-13 14:21:39] 2025-12-13 19:20:46,081 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.16535
[2025-12-13 14:21:39] 2025-12-13 19:20:46,104 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6926944336/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 14:21:39] 2025-12-13 19:20:46,105 | INFO     | extracted standard info from prmon json
[2025-12-13 14:21:39] 2025-12-13 19:20:46,105 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 14:21:39] 2025-12-13 19:20:46,105 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 14:21:39] 2025-12-13 19:20:46,114 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 14:21:39] 2025-12-13 19:20:46,114 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 14:21:39] 2025-12-13 19:20:46,160 | INFO     | fitting pss+swap vs Time
[2025-12-13 14:21:39] 2025-12-13 19:20:46,169 | INFO     | sum of square deviations: 176655160444.21234
[2025-12-13 14:21:39] 2025-12-13 19:20:46,241 | INFO     | sum of deviations: 693967365529.7646
[2025-12-13 14:21:39] 2025-12-13 19:20:46,241 | INFO     | mean x: 1765628316.9240048
[2025-12-13 14:21:39] 2025-12-13 19:20:46,241 | INFO     | mean y: 2515051.5042219544
[2025-12-13 14:21:39] 2025-12-13 19:20:46,242 | INFO     | intersect: -6933531586.020697
[2025-12-13 14:21:39] 2025-12-13 19:20:46,243 | INFO     | chi2: 6.876334567385629
[2025-12-13 14:21:39] 2025-12-13 19:20:46,255 | INFO     | sum of square deviations: 173478106589.91727
[2025-12-13 14:21:39] 2025-12-13 19:20:46,339 | INFO     | sum of deviations: 796921001664.9135
[2025-12-13 14:21:39] 2025-12-13 19:20:46,339 | INFO     | mean x: 1765628164.4296117
[2025-12-13 14:21:39] 2025-12-13 19:20:46,340 | INFO     | mean y: 2519974.6019417476
[2025-12-13 14:21:39] 2025-12-13 19:20:46,340 | INFO     | intersect: -8108394958.8379
[2025-12-13 14:21:39] 2025-12-13 19:20:46,341 | INFO     | chi2: 5.507681583826393
[2025-12-13 14:21:39] 2025-12-13 19:20:46,341 | INFO     | current chi2=5.507681583826393 (change=19.903816054133554 %)
[2025-12-13 14:21:39] 2025-12-13 19:20:46,341 | INFO     | right removable region: 823
[2025-12-13 14:21:39] 2025-12-13 19:20:46,352 | INFO     | sum of square deviations: 173477740103.63135
[2025-12-13 14:21:39] 2025-12-13 19:20:46,432 | INFO     | sum of deviations: 425193417810.25275
[2025-12-13 14:21:39] 2025-12-13 19:20:46,432 | INFO     | mean x: 1765628469.4271846
[2025-12-13 14:21:39] 2025-12-13 19:20:46,432 | INFO     | mean y: 2527945.5958737866
[2025-12-13 14:21:39] 2025-12-13 19:20:46,433 | INFO     | intersect: -4325022108.090323
[2025-12-13 14:21:39] 2025-12-13 19:20:46,434 | INFO     | chi2: 3.1610968402533843
[2025-12-13 14:21:39] 2025-12-13 19:20:46,434 | INFO     | current chi2=3.1610968402533843 (change=54.02933337120581 %)
[2025-12-13 14:21:39] 2025-12-13 19:20:46,447 | INFO     | sum of square deviations: 170338696815.8925
[2025-12-13 14:21:39] 2025-12-13 19:20:46,533 | INFO     | sum of deviations: 260823392407.13535
[2025-12-13 14:21:39] 2025-12-13 19:20:46,533 | INFO     | mean x: 1765628621.9291818
[2025-12-13 14:21:39] 2025-12-13 19:20:46,533 | INFO     | mean y: 2535925.1575091574
[2025-12-13 14:21:39] 2025-12-13 19:20:46,533 | INFO     | intersect: -2701002704.1208773
[2025-12-13 14:21:39] 2025-12-13 19:20:46,550 | INFO     | chi2: 1.7829956400708333
[2025-12-13 14:21:39] 2025-12-13 19:20:46,550 | INFO     | current chi2=1.7829956400708333 (change=43.5956653600048 %)
[2025-12-13 14:21:39] 2025-12-13 19:20:46,551 | INFO     | sum of square deviations: 167237747021.64816
[2025-12-13 14:21:39] 2025-12-13 19:20:46,639 | INFO     | sum of deviations: 207029246252.5712
[2025-12-13 14:21:39] 2025-12-13 19:20:46,639 | INFO     | mean x: 1765628774.4312038
[2025-12-13 14:21:39] 2025-12-13 19:20:46,656 | INFO     | mean y: 2538568.7334152334
[2025-12-13 14:21:39] 2025-12-13 19:20:46,656 | INFO     | intersect: -2183192827.6900616
[2025-12-13 14:21:39] 2025-12-13 19:20:46,657 | INFO     | chi2: 1.6528201636725872
[2025-12-13 14:21:39] 2025-12-13 19:20:46,658 | INFO     | current chi2=1.6528201636725872 (change=7.300941935734325 %)
[2025-12-13 14:21:39] 2025-12-13 19:20:46,658 | INFO     | left removable region: 30
[2025-12-13 14:21:39] 2025-12-13 19:20:46,659 | INFO     | sum of square deviations: 154624671139.9818
[2025-12-13 14:21:39] 2025-12-13 19:20:46,735 | INFO     | sum of deviations: 261683261682.7163
[2025-12-13 14:21:39] 2025-12-13 19:20:46,735 | INFO     | mean x: 1765629048.9495587
[2025-12-13 14:21:39] 2025-12-13 19:20:46,736 | INFO     | mean y: 2546197.6179066836
[2025-12-13 14:21:39] 2025-12-13 19:20:46,736 | INFO     | intersect: -2985564076.4055176
[2025-12-13 14:21:39] 2025-12-13 19:20:46,737 | INFO     | chi2: 0.23006952227501593
[2025-12-13 14:21:39] 2025-12-13 19:20:46,737 | INFO     | current memory leak: 1.69 B/s (using 793 data points, chi2=0.23)
[2025-12-13 14:21:39] 2025-12-13 19:20:46,756 | INFO     | could have reported an average CPU frequency of 2600 MHz (31 samples)
[2025-12-13 14:21:39] 2025-12-13 19:20:46,757 | INFO     | ..............................
[2025-12-13 14:21:39] 2025-12-13 19:20:46,757 | INFO     | . Timing measurements:
[2025-12-13 14:21:39] 2025-12-13 19:20:46,757 | INFO     | . get job = 0 s
[2025-12-13 14:21:39] 2025-12-13 19:20:46,757 | INFO     | . initial setup = 11 s
[2025-12-13 14:21:39] 2025-12-13 19:20:46,757 | INFO     | . payload setup = 65 s
[2025-12-13 14:21:39] 2025-12-13 19:20:46,757 | INFO     | . stage-in = 1 s
[2025-12-13 14:21:39] 2025-12-13 19:20:46,757 | INFO     | . payload execution = 50581 s
[2025-12-13 14:21:39] 2025-12-13 19:20:46,757 | INFO     | . stage-out = 7 s
[2025-12-13 14:21:39] 2025-12-13 19:20:46,757 | INFO     | . log creation = 2 s
[2025-12-13 14:21:39] 2025-12-13 19:20:46,758 | INFO     | ..............................
[2025-12-13 14:21:39] 2025-12-13 19:20:46,771 | INFO     | time since job start (50808s) is within the limit (174528.0s)
[2025-12-13 14:21:39] 2025-12-13 19:20:47,448 | INFO     | 
[2025-12-13 14:21:39] 2025-12-13 19:20:47,448 | INFO     | job summary report
[2025-12-13 14:21:39] 2025-12-13 19:20:47,448 | INFO     | --------------------------------------------------
[2025-12-13 14:21:39] 2025-12-13 19:20:47,448 | INFO     | PanDA job id: 6926944336
[2025-12-13 14:21:39] 2025-12-13 19:20:47,448 | INFO     | task id: 47885665
[2025-12-13 14:21:39] 2025-12-13 19:20:47,449 | INFO     | errors: (none)
[2025-12-13 14:21:39] 2025-12-13 19:20:47,449 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 14:21:39] 2025-12-13 19:20:47,449 | INFO     | pilot state: finished 
[2025-12-13 14:21:39] 2025-12-13 19:20:47,449 | INFO     | transexitcode: 0
[2025-12-13 14:21:39] 2025-12-13 19:20:47,449 | INFO     | exeerrorcode: 0
[2025-12-13 14:21:39] 2025-12-13 19:20:47,449 | INFO     | exeerrordiag: 
[2025-12-13 14:21:39] 2025-12-13 19:20:47,449 | INFO     | exitcode: 0
[2025-12-13 14:21:39] 2025-12-13 19:20:47,449 | INFO     | exitmsg: OK
[2025-12-13 14:21:39] 2025-12-13 19:20:47,449 | INFO     | cpuconsumptiontime: 70451 s
[2025-12-13 14:21:39] 2025-12-13 19:20:47,449 | INFO     | nevents: 400
[2025-12-13 14:21:39] 2025-12-13 19:20:47,450 | INFO     | neventsw: 0
[2025-12-13 14:21:39] 2025-12-13 19:20:47,450 | INFO     | pid: 1610810
[2025-12-13 14:21:39] 2025-12-13 19:20:47,450 | INFO     | pgrp: 1610810
[2025-12-13 14:21:39] 2025-12-13 19:20:47,450 | INFO     | corecount: 8
[2025-12-13 14:21:39] 2025-12-13 19:20:47,450 | INFO     | event service: False
[2025-12-13 14:21:39] 2025-12-13 19:20:47,450 | INFO     | sizes: {0: 2283257, 1: 2283858, 2: 2283970, 3: 2284141, 4: 2284169, 5: 2284197, 16: 2284381, 27: 2284409, 39: 2284437, 51: 2284667, 52: 2284755, 63: 2285063, 50652
[2025-12-13 14:21:39] 2025-12-13 19:20:47,450 | INFO     | --------------------------------------------------
[2025-12-13 14:21:39] 2025-12-13 19:20:47,450 | INFO     | 
[2025-12-13 14:21:39] 2025-12-13 19:20:47,450 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-12-13 14:21:39] 2025-12-13 19:20:47,820 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 14:21:39] 2025-12-13 19:20:47,820 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 14:21:39] 2025-12-13 19:20:47,820 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 14:21:39] 2025-12-13 19:20:47,820 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 14:21:39] 2025-12-13 19:20:47,820 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 14:21:39] 2025-12-13 19:20:47,821 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 14:21:39] 2025-12-13 19:20:47,821 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 14:21:39] 2025-12-13 19:20:47,821 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 14:21:39] 2025-12-13 19:20:47,821 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 14:21:39] 2025-12-13 19:20:47,821 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 14:21:39] 2025-12-13 19:20:47,821 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 14:21:39] 2025-12-13 19:20:47,821 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 14:21:39] 2025-12-13 19:20:47,821 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 14:21:39] 2025-12-13 19:20:47,821 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 14:21:39] 2025-12-13 19:20:47,821 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 14:21:39] 2025-12-13 19:20:47,822 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 14:21:39] 2025-12-13 19:20:47,822 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 14:21:39] 2025-12-13 19:20:47,822 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 14:21:39] 2025-12-13 19:20:47,822 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 14:21:39] 2025-12-13 19:20:47,822 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 14:21:39] 2025-12-13 19:20:47,822 | INFO     | job 6926944336 has completed (purged errors)
[2025-12-13 14:21:39] 2025-12-13 19:20:47,822 | INFO     | overall cleanup function is called
[2025-12-13 14:21:39] 2025-12-13 19:20:48,877 | INFO     | --- collectZombieJob: --- 10, [1610810]
[2025-12-13 14:21:39] 2025-12-13 19:20:48,878 | INFO     | zombie collector waiting for pid 1610810
[2025-12-13 14:21:39] 2025-12-13 19:20:48,878 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 14:21:39] 2025-12-13 19:20:48,878 | INFO     | collected zombie processes
[2025-12-13 14:21:39] 2025-12-13 19:20:48,878 | INFO     | will attempt to kill all subprocesses of pid=1610810
[2025-12-13 14:21:39] 2025-12-13 19:20:49,480 | INFO     | process IDs to be killed: [1610810] (in reverse order)
[2025-12-13 14:21:39] 2025-12-13 19:20:49,679 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 14:21:39] 2025-12-13 19:20:49,680 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 14:21:39] 2025-12-13 19:20:49,697 | INFO     | did not find any defunct processes belonging to 1610810
[2025-12-13 14:21:39] 2025-12-13 19:20:49,713 | INFO     | did not find any defunct processes belonging to 1610810
[2025-12-13 14:21:39] 2025-12-13 19:20:49,713 | INFO     | ready for new job
[2025-12-13 14:21:39] 2025-12-13 19:20:49,713 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 14:21:39] 2025-12-13 19:20:49,720 | INFO     | ***************************************
[2025-12-13 14:21:39] 2025-12-13 19:20:49,721 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 14:21:39] 2025-12-13 19:20:49,721 | INFO     | ***************************************
[2025-12-13 14:21:39] 2025-12-13 19:20:49,721 | INFO     | 
[2025-12-13 14:21:39] 2025-12-13 19:20:49,727 | INFO     | architecture information:
[2025-12-13 14:21:39] 2025-12-13 19:20:49,732 | INFO     | executing command: cat /etc/os-release
[2025-12-13 14:21:39] 2025-12-13 19:20:49,909 | INFO     | cat /etc/os-release:
[2025-12-13 14:21:39] NAME="CentOS Linux"
[2025-12-13 14:21:39] VERSION="7 (Core)"
[2025-12-13 14:21:39] ID="centos"
[2025-12-13 14:21:39] ID_LIKE="rhel fedora"
[2025-12-13 14:21:39] VERSION_ID="7"
[2025-12-13 14:21:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 14:21:39] ANSI_COLOR="0;31"
[2025-12-13 14:21:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 14:21:39] HOME_URL="https://www.centos.org/"
[2025-12-13 14:21:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 14:21:39] 
[2025-12-13 14:21:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 14:21:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 14:21:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 14:21:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 14:21:39] 
[2025-12-13 14:21:39] 2025-12-13 19:20:49,909 | INFO     | ***************************************
[2025-12-13 14:21:39] 2025-12-13 19:20:50,413 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-12-13 14:21:39] 2025-12-13 19:20:50,718 | INFO     | sufficient remaining disk space (52964622336 B)
[2025-12-13 14:21:39] 2025-12-13 19:20:50,718 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 14:21:39] 2025-12-13 19:20:50,719 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 14:21:39] 2025-12-13 19:20:50,719 | INFO     | update_server=False
[2025-12-13 14:21:39] 2025-12-13 19:20:50,719 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 14:21:39] 2025-12-13 19:20:50,724 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 14:21:39] 2025-12-13 19:20:50,725 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 14:21:39] 2025-12-13 19:20:51,475 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 14:21:39] 2025-12-13 19:20:51,476 | INFO     | aborting loop
[2025-12-13 14:21:39] 2025-12-13 19:20:51,622 | INFO     | all data control threads have been joined
[2025-12-13 14:21:39] 2025-12-13 19:20:51,698 | INFO     | all job control threads have been joined
[2025-12-13 14:21:39] 2025-12-13 19:20:51,725 | INFO     | [job] retrieve thread has finished
[2025-12-13 14:21:39] 2025-12-13 19:20:52,050 | INFO     | all payload control threads have been joined
[2025-12-13 14:21:39] 2025-12-13 19:20:52,119 | INFO     | [payload] failed_post thread has finished
[2025-12-13 14:21:39] 2025-12-13 19:20:52,119 | INFO     | [job] validate thread has finished
[2025-12-13 14:21:39] 2025-12-13 19:20:52,128 | INFO     | [data] copytool_in thread has finished
[2025-12-13 14:21:39] 2025-12-13 19:20:52,194 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 14:21:39] 2025-12-13 19:20:52,512 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 14:21:39] 2025-12-13 19:20:52,513 | INFO     | [job] job monitor thread has finished
[2025-12-13 14:21:39] 2025-12-13 19:20:52,629 | INFO     | [data] control thread has finished
[2025-12-13 14:21:39] 2025-12-13 19:20:52,732 | INFO     | [job] control thread has finished
[2025-12-13 14:21:39] 2025-12-13 19:20:52,737 | INFO     | [data] copytool_out thread has finished
[2025-12-13 14:21:39] 2025-12-13 19:20:52,757 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 14:21:39] 2025-12-13 19:20:52,757 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 14:21:39] 2025-12-13 19:20:52,762 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 14:21:39] 2025-12-13 19:20:52,881 | INFO     | [payload] validate_post thread has finished
[2025-12-13 14:21:39] 2025-12-13 19:20:53,067 | INFO     | [payload] control thread has finished
[2025-12-13 14:21:39] 2025-12-13 19:20:53,518 | INFO     | [job] queue monitor thread has finished
[2025-12-13 14:21:39] 2025-12-13 19:20:54,761 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 14:21:39] 2025-12-13 19:21:21,473 | INFO     | PID=1599503 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-13 14:21:39] 2025-12-13 19:21:21,473 | INFO     | .. there are 7 such processes running
[2025-12-13 14:21:39] 2025-12-13 19:21:21,474 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 14:21:39] 2025-12-13 19:21:21,474 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 14:21:39] 2025-12-13 19:21:21,474 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 14:21:39] 2025-12-13 19:21:31,193 | INFO     | [monitor] cgroup control has ended
[2025-12-13 14:21:39] 2025-12-13 19:21:32,900 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139720699545408)>', '<ExcThread(monitor, started 139720344446720)>']
[2025-12-13 14:21:39] 2025-12-13 19:21:33,599 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 14:21:39] 2025-12-13 19:21:33,600 | INFO     | [monitor] control thread has ended
[2025-12-13 14:21:39] 2025-12-13 19:21:37,927 | INFO     | all workflow threads have been joined
[2025-12-13 14:21:39] 2025-12-13 19:21:37,928 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 14:21:39] 2025-12-13 19:21:37,928 | INFO     | traces error code: 0
[2025-12-13 14:21:39] 2025-12-13 19:21:37,928 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 14:21:39] 2025-12-13 19:21:38,716 [wrapper] ==== pilot stdout END ====
[2025-12-13 14:21:39] 2025-12-13 19:21:38,721 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 14:21:39] 2025-12-13 19:21:38,724 [wrapper] pilotpid: 1599503
[2025-12-13 14:21:39] 2025-12-13 19:21:38,727 [wrapper] Pilot exit status: 0
[2025-12-13 14:21:39] 2025-12-13 19:21:38,894 [wrapper] pandaids: 6926944336
[2025-12-13 14:21:39] 2025-12-13 19:21:39,602 [wrapper] cleanup supervisor_pilot 2647077 1599504
[2025-12-13 14:21:39] 2025-12-13 19:21:39,605 [wrapper] Test setup, not cleaning
[2025-12-13 14:21:39] 2025-12-13 19:21:39,608 [wrapper] apfmon messages muted
[2025-12-13 14:21:39] 2025-12-13 19:21:39,611 [wrapper] ==== wrapper stdout END ====
[2025-12-13 14:21:39] 2025-12-13 19:21:39,627 [wrapper] ==== wrapper stderr END ====
[2025-12-13 14:21:39]  *** Error codes and diagnostics ***
[2025-12-13 14:21:39]     "exeErrorCode": 0,
[2025-12-13 14:21:39]     "exeErrorDiag": "",
[2025-12-13 14:21:39]     "pilotErrorCode": 0,
[2025-12-13 14:21:39]     "pilotErrorDiag": "",
[2025-12-13 14:21:39]  *** Listing of results directory ***
[2025-12-13 14:21:39] total 513272
[2025-12-13 14:21:39] -rw-r--r--. 1 boincer umatlas    579449 Dec 11 10:27 pilot3.tar.gz
[2025-12-13 14:21:39] -rw-r--r--. 1 boincer umatlas      5112 Dec 11 10:45 queuedata.json
[2025-12-13 14:21:39] -rwx------. 1 boincer umatlas     36322 Dec 11 10:45 runpilot2-wrapper.sh
[2025-12-13 14:21:39] -rw-r--r--. 1 boincer umatlas       100 Dec 13 00:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 14:21:39] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 13 00:11 run_atlas
[2025-12-13 14:21:39] -rw-r--r--. 1 boincer umatlas       105 Dec 13 00:11 job.xml
[2025-12-13 14:21:39] -rw-r--r--. 2 boincer umatlas 292665802 Dec 13 00:11 EVNT.47885663._000008.pool.root.1
[2025-12-13 14:21:39] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 00:11 start_atlas.sh
[2025-12-13 14:21:39] drwxrwx--x. 2 boincer umatlas      4096 Dec 13 00:11 shared
[2025-12-13 14:21:39] -rw-r--r--. 2 boincer umatlas    592420 Dec 13 00:11 input.tar.gz
[2025-12-13 14:21:39] -rw-r--r--. 1 boincer umatlas         0 Dec 13 00:11 boinc_lockfile
[2025-12-13 14:21:39] -rw-r--r--. 1 boincer umatlas      2619 Dec 13 00:11 pandaJob.out
[2025-12-13 14:21:39] -rw-------. 1 boincer umatlas        57 Dec 13 00:12 setup.sh.local
[2025-12-13 14:21:39] -rw-------. 1 boincer umatlas    991736 Dec 13 00:13 agis_schedconf.cvmfs.json
[2025-12-13 14:21:39] drwx------. 5 boincer umatlas      4096 Dec 13 00:13 pilot3
[2025-12-13 14:21:39] -rw-------. 1 boincer umatlas 214476982 Dec 13 14:18 HITS.47885665._000181.pool.root.1
[2025-12-13 14:21:39] -rw-r--r--. 1 boincer umatlas       531 Dec 13 14:18 boinc_task_state.xml
[2025-12-13 14:21:39] -rw-r--r--. 1 boincer umatlas      6660 Dec 13 14:19 init_data.xml
[2025-12-13 14:21:39] -rw-------. 1 boincer umatlas      1040 Dec 13 14:19 memory_monitor_summary.json
[2025-12-13 14:21:39] -rw-------. 1 boincer umatlas   1516240 Dec 13 14:20 agis_ddmendpoints.agis.ALL.json
[2025-12-13 14:21:39] -rw-------. 1 boincer umatlas    910898 Dec 13 14:20 log.47885665._000181.job.log.tgz.1
[2025-12-13 14:21:39] -rw-------. 1 boincer umatlas        95 Dec 13 14:20 pilot_heartbeat.json
[2025-12-13 14:21:39] -rw-------. 1 boincer umatlas      7812 Dec 13 14:20 heartbeat.json
[2025-12-13 14:21:39] -rw-r--r--. 1 boincer umatlas      8192 Dec 13 14:21 boinc_mmap_file
[2025-12-13 14:21:39] -rw-r--r--. 1 boincer umatlas        28 Dec 13 14:21 wrapper_checkpoint.txt
[2025-12-13 14:21:39] -rw-------. 1 boincer umatlas      4823 Dec 13 14:21 pilotlog.txt
[2025-12-13 14:21:39] -rw-------. 1 boincer umatlas   6354958 Dec 13 14:21 log.47885665._000181.job.log.1
[2025-12-13 14:21:39] -rw-------. 1 boincer umatlas       357 Dec 13 14:21 output.list
[2025-12-13 14:21:39] -rw-r--r--. 1 boincer umatlas       620 Dec 13 14:21 runtime_log
[2025-12-13 14:21:39] -rw-------. 1 boincer umatlas   7280640 Dec 13 14:21 result.tar.gz
[2025-12-13 14:21:39] -rw-r--r--. 1 boincer umatlas      9338 Dec 13 14:21 runtime_log.err
[2025-12-13 14:21:39] -rw-------. 1 boincer umatlas       657 Dec 13 14:21 MuMMDml2xn8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmkMNKDmlasxJn.diag
[2025-12-13 14:21:39] -rw-r--r--. 1 boincer umatlas     21176 Dec 13 14:21 stderr.txt
[2025-12-13 14:21:39] HITS file was successfully produced:
[2025-12-13 14:21:39] -rw-------. 1 boincer umatlas 214476982 Dec 13 14:18 shared/HITS.pool.root.1
[2025-12-13 14:21:39]  *** Contents of shared directory: ***
[2025-12-13 14:21:40] total 502972
[2025-12-13 14:21:40] -rw-r--r--. 2 boincer umatlas 292665802 Dec 13 00:11 ATLAS.root_0
[2025-12-13 14:21:40] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 00:11 start_atlas.sh
[2025-12-13 14:21:40] -rw-r--r--. 2 boincer umatlas    592420 Dec 13 00:11 input.tar.gz
[2025-12-13 14:21:40] -rw-------. 1 boincer umatlas 214476982 Dec 13 14:18 HITS.pool.root.1
[2025-12-13 14:21:40] -rw-------. 1 boincer umatlas   7280640 Dec 13 14:21 result.tar.gz
14:21:41 (1588150): run_atlas exited; CPU time 71846.304105
14:21:41 (1588150): called boinc_finish(0)

</stderr_txt>
]]>

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