Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:37 (275096): wrapper (7.7.26015): starting
00:05:37 (275096): wrapper: running run_atlas (--nthreads 9)
[2025-12-13 00:05:37] Arguments: --nthreads 9
[2025-12-13 00:05:37] Threads: 9
[2025-12-13 00:05:37] Checking for CVMFS
[2025-12-13 00:05:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 00:05:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 00:05:39] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 00:05:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 00:05:40] 2.13.3.0 11601 54087 332356 153948 0 423 22174366 32935937 18260 16776704 0 196262024 99.446 282275433 38837 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-13 00:05:40] CVMFS is ok
[2025-12-13 00:05:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 00:05:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 00:05:40] Further information can be found at the LHC@home message board.
[2025-12-13 00:05:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 00:05:40] Checking for apptainer binary...
[2025-12-13 00:05:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 00:05:40] Running /usr/bin/apptainer --version
[2025-12-13 00:05:41] apptainer version 1.4.4-1.el9
[2025-12-13 00:05:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 00:05:41] c6-6-39-4.aglt2.org
[2025-12-13 00:05:41] apptainer works
[2025-12-13 00:05:41] Set ATHENA_PROC_NUMBER=9
[2025-12-13 00:05:41] Set ATHENA_CORE_NUMBER=9
[2025-12-13 00:05:42] Starting ATLAS job with PandaID=6928958927
[2025-12-13 00:05:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 09:11:31]  *** The last 200 lines of the pilot log: ***
[2025-12-13 09:11:31] 2025-12-13 14:10:49,904 | INFO     | monitor loop #1803: job 0:6928958927 is in state 'finished'
[2025-12-13 09:11:31] 2025-12-13 14:10:49,905 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 09:11:31] 2025-12-13 14:10:51,117 | INFO     | time since job start (32608s) is within the limit (174528.0s)
[2025-12-13 09:11:31] 2025-12-13 14:10:52,410 | INFO     | monitor loop #1804: job 0:6928958927 is in state 'finished'
[2025-12-13 09:11:31] 2025-12-13 14:10:52,416 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 09:11:31] 2025-12-13 14:10:53,124 | INFO     | time since job start (32610s) is within the limit (174528.0s)
[2025-12-13 09:11:31] 2025-12-13 14:10:54,916 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-13 09:11:31] 2025-12-13 14:10:54,926 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2872.8609107142847
[2025-12-13 09:11:31] 2025-12-13 14:10:54,945 | INFO     | monitor loop #1805: job 0:6928958927 is in state 'finished'
[2025-12-13 09:11:31] 2025-12-13 14:10:54,946 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 09:11:31] 2025-12-13 14:10:54,966 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6928958927/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 09:11:31] 2025-12-13 14:10:54,967 | INFO     | extracted standard info from prmon json
[2025-12-13 09:11:31] 2025-12-13 14:10:54,967 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 09:11:31] 2025-12-13 14:10:54,968 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 09:11:31] 2025-12-13 14:10:54,968 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 09:11:31] 2025-12-13 14:10:54,968 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 09:11:31] 2025-12-13 14:10:54,987 | INFO     | fitting pss+swap vs Time
[2025-12-13 09:11:31] 2025-12-13 14:10:54,988 | INFO     | sum of square deviations: 46685932011.31395
[2025-12-13 09:11:31] 2025-12-13 14:10:54,997 | INFO     | sum of deviations: 300387994468.9117
[2025-12-13 09:11:31] 2025-12-13 14:10:54,997 | INFO     | mean x: 1765618802.3176692
[2025-12-13 09:11:31] 2025-12-13 14:10:54,997 | INFO     | mean y: 2499855.5093984962
[2025-12-13 09:11:31] 2025-12-13 14:10:54,997 | INFO     | intersect: -11357896481.79143
[2025-12-13 09:11:31] 2025-12-13 14:10:54,998 | INFO     | chi2: 4.5010840671829895
[2025-12-13 09:11:31] 2025-12-13 14:10:54,999 | INFO     | sum of square deviations: 45381984417.93967
[2025-12-13 09:11:31] 2025-12-13 14:10:55,008 | INFO     | sum of deviations: 332383864712.9943
[2025-12-13 09:11:31] 2025-12-13 14:10:55,008 | INFO     | mean x: 1765618649.825427
[2025-12-13 09:11:31] 2025-12-13 14:10:55,008 | INFO     | mean y: 2503565.358633776
[2025-12-13 09:11:31] 2025-12-13 14:10:55,009 | INFO     | intersect: -12929129062.991688
[2025-12-13 09:11:31] 2025-12-13 14:10:55,010 | INFO     | chi2: 3.740311317251576
[2025-12-13 09:11:31] 2025-12-13 14:10:55,010 | INFO     | current chi2=3.740311317251576 (change=16.901989355811885 %)
[2025-12-13 09:11:31] 2025-12-13 14:10:55,010 | INFO     | right removable region: 526
[2025-12-13 09:11:31] 2025-12-13 14:10:55,011 | INFO     | sum of square deviations: 45381719067.93961
[2025-12-13 09:11:31] 2025-12-13 14:10:55,019 | INFO     | sum of deviations: 141861401502.40228
[2025-12-13 09:11:31] 2025-12-13 14:10:55,019 | INFO     | mean x: 1765618954.825427
[2025-12-13 09:11:31] 2025-12-13 14:10:55,019 | INFO     | mean y: 2518372.6565464893
[2025-12-13 09:11:31] 2025-12-13 14:10:55,020 | INFO     | intersect: -5516734414.479302
[2025-12-13 09:11:31] 2025-12-13 14:10:55,021 | INFO     | chi2: 1.272183502275499
[2025-12-13 09:11:31] 2025-12-13 14:10:55,021 | INFO     | current chi2=1.272183502275499 (change=71.73606439500035 %)
[2025-12-13 09:11:31] 2025-12-13 14:10:55,022 | INFO     | sum of square deviations: 44102179066.28535
[2025-12-13 09:11:31] 2025-12-13 14:10:55,030 | INFO     | sum of deviations: 90161779822.09787
[2025-12-13 09:11:31] 2025-12-13 14:10:55,030 | INFO     | mean x: 1765619107.3237548
[2025-12-13 09:11:31] 2025-12-13 14:10:55,031 | INFO     | mean y: 2524531.4195402297
[2025-12-13 09:11:31] 2025-12-13 14:10:55,031 | INFO     | intersect: -3607078544.313964
[2025-12-13 09:11:31] 2025-12-13 14:10:55,032 | INFO     | chi2: 0.9729905810182352
[2025-12-13 09:11:31] 2025-12-13 14:10:55,032 | INFO     | current chi2=0.9729905810182352 (change=23.518063292135963 %)
[2025-12-13 09:11:31] 2025-12-13 14:10:55,032 | INFO     | left removable region: 20
[2025-12-13 09:11:31] 2025-12-13 14:10:55,033 | INFO     | sum of square deviations: 40169687970.885216
[2025-12-13 09:11:31] 2025-12-13 14:10:55,041 | INFO     | sum of deviations: 65416545248.30835
[2025-12-13 09:11:31] 2025-12-13 14:10:55,041 | INFO     | mean x: 1765619229.3359685
[2025-12-13 09:11:31] 2025-12-13 14:10:55,042 | INFO     | mean y: 2535734.7687747036
[2025-12-13 09:11:31] 2025-12-13 14:10:55,042 | INFO     | intersect: -2872784339.682738
[2025-12-13 09:11:31] 2025-12-13 14:10:55,043 | INFO     | chi2: 0.012326157726067296
[2025-12-13 09:11:31] 2025-12-13 14:10:55,043 | INFO     | current memory leak: 1.63 B/s (using 506 data points, chi2=0.01)
[2025-12-13 09:11:31] 2025-12-13 14:10:55,044 | INFO     | could have reported an average CPU frequency of 2980 MHz (21 samples)
[2025-12-13 09:11:31] 2025-12-13 14:10:55,045 | INFO     | ..............................
[2025-12-13 09:11:31] 2025-12-13 14:10:55,045 | INFO     | . Timing measurements:
[2025-12-13 09:11:31] 2025-12-13 14:10:55,045 | INFO     | . get job = 0 s
[2025-12-13 09:11:31] 2025-12-13 14:10:55,045 | INFO     | . initial setup = 6 s
[2025-12-13 09:11:31] 2025-12-13 14:10:55,045 | INFO     | . payload setup = 45 s
[2025-12-13 09:11:31] 2025-12-13 14:10:55,045 | INFO     | . stage-in = 0 s
[2025-12-13 09:11:31] 2025-12-13 14:10:55,045 | INFO     | . payload execution = 32448 s
[2025-12-13 09:11:31] 2025-12-13 14:10:55,045 | INFO     | . stage-out = 3 s
[2025-12-13 09:11:31] 2025-12-13 14:10:55,046 | INFO     | . log creation = 0 s
[2025-12-13 09:11:31] 2025-12-13 14:10:55,046 | INFO     | ..............................
[2025-12-13 09:11:31] 2025-12-13 14:10:55,140 | INFO     | time since job start (32612s) is within the limit (174528.0s)
[2025-12-13 09:11:31] 2025-12-13 14:10:55,230 | INFO     | 
[2025-12-13 09:11:31] 2025-12-13 14:10:55,231 | INFO     | job summary report
[2025-12-13 09:11:31] 2025-12-13 14:10:55,231 | INFO     | --------------------------------------------------
[2025-12-13 09:11:31] 2025-12-13 14:10:55,231 | INFO     | PanDA job id: 6928958927
[2025-12-13 09:11:31] 2025-12-13 14:10:55,231 | INFO     | task id: 47886831
[2025-12-13 09:11:31] 2025-12-13 14:10:55,231 | INFO     | errors: (none)
[2025-12-13 09:11:31] 2025-12-13 14:10:55,231 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 09:11:31] 2025-12-13 14:10:55,231 | INFO     | pilot state: finished 
[2025-12-13 09:11:31] 2025-12-13 14:10:55,231 | INFO     | transexitcode: 0
[2025-12-13 09:11:31] 2025-12-13 14:10:55,231 | INFO     | exeerrorcode: 0
[2025-12-13 09:11:31] 2025-12-13 14:10:55,231 | INFO     | exeerrordiag: 
[2025-12-13 09:11:31] 2025-12-13 14:10:55,231 | INFO     | exitcode: 0
[2025-12-13 09:11:31] 2025-12-13 14:10:55,231 | INFO     | exitmsg: OK
[2025-12-13 09:11:31] 2025-12-13 14:10:55,231 | INFO     | cpuconsumptiontime: 43026 s
[2025-12-13 09:11:31] 2025-12-13 14:10:55,231 | INFO     | nevents: 400
[2025-12-13 09:11:31] 2025-12-13 14:10:55,232 | INFO     | neventsw: 0
[2025-12-13 09:11:31] 2025-12-13 14:10:55,232 | INFO     | pid: 328522
[2025-12-13 09:11:31] 2025-12-13 14:10:55,232 | INFO     | pgrp: 328522
[2025-12-13 09:11:31] 2025-12-13 14:10:55,232 | INFO     | corecount: 9
[2025-12-13 09:11:31] 2025-12-13 14:10:55,232 | INFO     | event service: False
[2025-12-13 09:11:31] 2025-12-13 14:10:55,232 | INFO     | sizes: {0: 2283161, 1: 2283762, 2: 2284045, 3: 2284045, 14: 2284073, 25: 2284101, 36: 2284257, 40: 2284547, 48: 2284575, 32498: 2323139, 32503: 2332137, 32507: 233
[2025-12-13 09:11:31] 2025-12-13 14:10:55,232 | INFO     | --------------------------------------------------
[2025-12-13 09:11:31] 2025-12-13 14:10:55,232 | INFO     | 
[2025-12-13 09:11:31] 2025-12-13 14:10:55,232 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-12-13 09:11:31] 2025-12-13 14:10:55,318 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 09:11:31] 2025-12-13 14:10:55,318 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 09:11:31] 2025-12-13 14:10:55,318 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 09:11:31] 2025-12-13 14:10:55,318 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 09:11:31] 2025-12-13 14:10:55,319 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 09:11:31] 2025-12-13 14:10:55,319 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 09:11:31] 2025-12-13 14:10:55,319 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 09:11:31] 2025-12-13 14:10:55,319 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 09:11:31] 2025-12-13 14:10:55,319 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 09:11:31] 2025-12-13 14:10:55,319 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 09:11:31] 2025-12-13 14:10:55,319 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 09:11:31] 2025-12-13 14:10:55,319 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 09:11:31] 2025-12-13 14:10:55,319 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 09:11:31] 2025-12-13 14:10:55,319 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 09:11:31] 2025-12-13 14:10:55,319 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 09:11:31] 2025-12-13 14:10:55,319 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 09:11:31] 2025-12-13 14:10:55,319 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 09:11:31] 2025-12-13 14:10:55,320 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 09:11:31] 2025-12-13 14:10:55,320 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 09:11:31] 2025-12-13 14:10:55,320 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 09:11:31] 2025-12-13 14:10:55,320 | INFO     | job 6928958927 has completed (purged errors)
[2025-12-13 09:11:31] 2025-12-13 14:10:55,320 | INFO     | overall cleanup function is called
[2025-12-13 09:11:31] 2025-12-13 14:10:56,329 | INFO     | --- collectZombieJob: --- 10, [328522]
[2025-12-13 09:11:31] 2025-12-13 14:10:56,329 | INFO     | zombie collector waiting for pid 328522
[2025-12-13 09:11:31] 2025-12-13 14:10:56,330 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 09:11:31] 2025-12-13 14:10:56,330 | INFO     | collected zombie processes
[2025-12-13 09:11:31] 2025-12-13 14:10:56,330 | INFO     | will attempt to kill all subprocesses of pid=328522
[2025-12-13 09:11:31] 2025-12-13 14:10:57,018 | INFO     | process IDs to be killed: [328522] (in reverse order)
[2025-12-13 09:11:31] 2025-12-13 14:10:57,127 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 09:11:31] 2025-12-13 14:10:57,127 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 09:11:31] 2025-12-13 14:10:57,152 | INFO     | did not find any defunct processes belonging to 328522
[2025-12-13 09:11:31] 2025-12-13 14:10:57,166 | INFO     | did not find any defunct processes belonging to 328522
[2025-12-13 09:11:31] 2025-12-13 14:10:57,167 | INFO     | ready for new job
[2025-12-13 09:11:31] 2025-12-13 14:10:57,167 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 09:11:31] 2025-12-13 14:10:57,170 | INFO     | ***************************************
[2025-12-13 09:11:31] 2025-12-13 14:10:57,170 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 09:11:31] 2025-12-13 14:10:57,170 | INFO     | ***************************************
[2025-12-13 09:11:31] 2025-12-13 14:10:57,170 | INFO     | 
[2025-12-13 09:11:31] 2025-12-13 14:10:57,173 | INFO     | architecture information:
[2025-12-13 09:11:31] 2025-12-13 14:10:57,174 | INFO     | executing command: cat /etc/os-release
[2025-12-13 09:11:31] 2025-12-13 14:10:57,195 | INFO     | cat /etc/os-release:
[2025-12-13 09:11:31] NAME="CentOS Linux"
[2025-12-13 09:11:31] VERSION="7 (Core)"
[2025-12-13 09:11:31] ID="centos"
[2025-12-13 09:11:31] ID_LIKE="rhel fedora"
[2025-12-13 09:11:31] VERSION_ID="7"
[2025-12-13 09:11:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 09:11:31] ANSI_COLOR="0;31"
[2025-12-13 09:11:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 09:11:31] HOME_URL="https://www.centos.org/"
[2025-12-13 09:11:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 09:11:31] 
[2025-12-13 09:11:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 09:11:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 09:11:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 09:11:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 09:11:31] 
[2025-12-13 09:11:31] 2025-12-13 14:10:57,195 | INFO     | ***************************************
[2025-12-13 09:11:31] 2025-12-13 14:10:57,699 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-12-13 09:11:31] 2025-12-13 14:10:57,758 | INFO     | sufficient remaining disk space (75653709824 B)
[2025-12-13 09:11:31] 2025-12-13 14:10:57,758 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 09:11:31] 2025-12-13 14:10:57,759 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 09:11:31] 2025-12-13 14:10:57,759 | INFO     | update_server=False
[2025-12-13 09:11:31] 2025-12-13 14:10:57,759 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 09:11:31] 2025-12-13 14:10:57,759 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 09:11:31] 2025-12-13 14:10:58,151 | INFO     | all payload control threads have been joined
[2025-12-13 09:11:31] 2025-12-13 14:10:58,465 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 09:11:31] 2025-12-13 14:10:58,466 | INFO     | aborting loop
[2025-12-13 09:11:31] 2025-12-13 14:10:58,764 | INFO     | [job] retrieve thread has finished
[2025-12-13 09:11:31] 2025-12-13 14:10:58,808 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 09:11:31] 2025-12-13 14:10:58,857 | INFO     | all data control threads have been joined
[2025-12-13 09:11:31] 2025-12-13 14:10:58,896 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 09:11:31] 2025-12-13 14:10:58,927 | INFO     | all job control threads have been joined
[2025-12-13 09:11:31] 2025-12-13 14:10:58,938 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 09:11:31] 2025-12-13 14:10:59,058 | INFO     | [data] copytool_in thread has finished
[2025-12-13 09:11:31] 2025-12-13 14:10:59,060 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 09:11:31] 2025-12-13 14:10:59,157 | INFO     | [payload] control thread has finished
[2025-12-13 09:11:31] 2025-12-13 14:10:59,438 | INFO     | [job] validate thread has finished
[2025-12-13 09:11:31] 2025-12-13 14:10:59,471 | INFO     | [job] job monitor thread has finished
[2025-12-13 09:11:31] 2025-12-13 14:10:59,727 | INFO     | [payload] failed_post thread has finished
[2025-12-13 09:11:31] 2025-12-13 14:10:59,766 | INFO     | [data] copytool_out thread has finished
[2025-12-13 09:11:31] 2025-12-13 14:10:59,769 | INFO     | [payload] validate_post thread has finished
[2025-12-13 09:11:31] 2025-12-13 14:10:59,863 | INFO     | [data] control thread has finished
[2025-12-13 09:11:31] 2025-12-13 14:10:59,883 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 09:11:31] 2025-12-13 14:10:59,933 | INFO     | [job] control thread has finished
[2025-12-13 09:11:31] 2025-12-13 14:11:00,244 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 09:11:31] 2025-12-13 14:11:01,250 | INFO     | [job] queue monitor thread has finished
[2025-12-13 09:11:31] 2025-12-13 14:11:02,817 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 09:11:31] 2025-12-13 14:11:25,425 | INFO     | [monitor] cgroup control has ended
[2025-12-13 09:11:31] 2025-12-13 14:11:25,451 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140188814579520)>', '<ExcThread(monitor, started 140188185515776)>']
[2025-12-13 09:11:31] 2025-12-13 14:11:28,822 | INFO     | PID=289575 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-13 09:11:31] 2025-12-13 14:11:28,822 | INFO     | .. there are 22 such processes running
[2025-12-13 09:11:31] 2025-12-13 14:11:28,824 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 09:11:31] 2025-12-13 14:11:28,824 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 09:11:31] 2025-12-13 14:11:28,824 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 09:11:31] 2025-12-13 14:11:28,824 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 09:11:31] 2025-12-13 14:11:28,824 | INFO     | [monitor] control thread has ended
[2025-12-13 09:11:31] 2025-12-13 14:11:30,477 | INFO     | all workflow threads have been joined
[2025-12-13 09:11:31] 2025-12-13 14:11:30,481 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 09:11:31] 2025-12-13 14:11:30,482 | INFO     | traces error code: 0
[2025-12-13 09:11:31] 2025-12-13 14:11:30,482 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 09:11:31] 2025-12-13 14:11:30,797 [wrapper] ==== pilot stdout END ====
[2025-12-13 09:11:31] 2025-12-13 14:11:30,801 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 09:11:31] 2025-12-13 14:11:30,805 [wrapper] pilotpid: 289575
[2025-12-13 09:11:31] 2025-12-13 14:11:30,810 [wrapper] Pilot exit status: 0
[2025-12-13 09:11:31] 2025-12-13 14:11:30,827 [wrapper] pandaids: 6928958927
[2025-12-13 09:11:31] 2025-12-13 14:11:30,943 [wrapper] cleanup supervisor_pilot 2051622 289576
[2025-12-13 09:11:31] 2025-12-13 14:11:30,965 [wrapper] Test setup, not cleaning
[2025-12-13 09:11:31] 2025-12-13 14:11:30,969 [wrapper] apfmon messages muted
[2025-12-13 09:11:31] 2025-12-13 14:11:30,972 [wrapper] ==== wrapper stdout END ====
[2025-12-13 09:11:31] 2025-12-13 14:11:30,977 [wrapper] ==== wrapper stderr END ====
[2025-12-13 09:11:31]  *** Error codes and diagnostics ***
[2025-12-13 09:11:31]     "exeErrorCode": 0,
[2025-12-13 09:11:31]     "exeErrorDiag": "",
[2025-12-13 09:11:31]     "pilotErrorCode": 0,
[2025-12-13 09:11:31]     "pilotErrorDiag": "",
[2025-12-13 09:11:31]  *** Listing of results directory ***
[2025-12-13 09:11:31] total 346888
[2025-12-13 09:11:31] -rw-r--r--. 1 boincer umatlas    579449 Dec 12 23:45 pilot3.tar.gz
[2025-12-13 09:11:31] -rwx------. 1 boincer umatlas     36322 Dec 12 23:50 runpilot2-wrapper.sh
[2025-12-13 09:11:31] -rw-r--r--. 1 boincer umatlas      5112 Dec 12 23:50 queuedata.json
[2025-12-13 09:11:31] -rw-r--r--. 1 boincer umatlas       100 Dec 13 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 09:11:31] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 13 00:05 run_atlas
[2025-12-13 09:11:31] -rw-r--r--. 1 boincer umatlas       105 Dec 13 00:05 job.xml
[2025-12-13 09:11:31] -rw-r--r--. 2 boincer umatlas 193126701 Dec 13 00:05 EVNT.47886829._000105.pool.root.1
[2025-12-13 09:11:31] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 00:05 start_atlas.sh
[2025-12-13 09:11:31] drwxrwx--x. 2 boincer umatlas      4096 Dec 13 00:05 shared
[2025-12-13 09:11:31] -rw-r--r--. 2 boincer umatlas    592414 Dec 13 00:05 input.tar.gz
[2025-12-13 09:11:31] -rw-r--r--. 1 boincer umatlas         0 Dec 13 00:05 boinc_lockfile
[2025-12-13 09:11:31] -rw-r--r--. 1 boincer umatlas      2537 Dec 13 00:05 pandaJob.out
[2025-12-13 09:11:31] -rw-------. 1 boincer umatlas        57 Dec 13 00:05 setup.sh.local
[2025-12-13 09:11:31] -rw-------. 1 boincer umatlas    991736 Dec 13 00:07 agis_schedconf.cvmfs.json
[2025-12-13 09:11:31] drwx------. 5 boincer umatlas      4096 Dec 13 00:07 pilot3
[2025-12-13 09:11:31] -rw-r--r--. 1 boincer umatlas      6843 Dec 13 09:02 init_data.xml
[2025-12-13 09:11:31] -rw-------. 1 boincer umatlas 149063751 Dec 13 09:09 HITS.47886831._002620.pool.root.1
[2025-12-13 09:11:31] -rw-r--r--. 1 boincer umatlas       530 Dec 13 09:09 boinc_task_state.xml
[2025-12-13 09:11:31] -rw-------. 1 boincer umatlas      1039 Dec 13 09:10 memory_monitor_summary.json
[2025-12-13 09:11:31] -rw-------. 1 boincer umatlas   1516240 Dec 13 09:10 agis_ddmendpoints.agis.ALL.json
[2025-12-13 09:11:31] -rw-------. 1 boincer umatlas    695654 Dec 13 09:10 log.47886831._002620.job.log.tgz.1
[2025-12-13 09:11:31] -rw-------. 1 boincer umatlas      7821 Dec 13 09:10 heartbeat.json
[2025-12-13 09:11:31] -rw-r--r--. 1 boincer umatlas        27 Dec 13 09:11 wrapper_checkpoint.txt
[2025-12-13 09:11:31] -rw-r--r--. 1 boincer umatlas      8192 Dec 13 09:11 boinc_mmap_file
[2025-12-13 09:11:31] -rw-------. 1 boincer umatlas        95 Dec 13 09:11 pilot_heartbeat.json
[2025-12-13 09:11:31] -rw-------. 1 boincer umatlas      4823 Dec 13 09:11 pilotlog.txt
[2025-12-13 09:11:31] -rw-------. 1 boincer umatlas   3856263 Dec 13 09:11 log.47886831._002620.job.log.1
[2025-12-13 09:11:31] -rw-------. 1 boincer umatlas       357 Dec 13 09:11 output.list
[2025-12-13 09:11:31] -rw-r--r--. 1 boincer umatlas       620 Dec 13 09:11 runtime_log
[2025-12-13 09:11:31] -rw-------. 1 boincer umatlas   4567040 Dec 13 09:11 result.tar.gz
[2025-12-13 09:11:31] -rw-------. 1 boincer umatlas       658 Dec 13 09:11 VQRNDmNlWo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQjRKDmRZMWum.diag
[2025-12-13 09:11:31] -rw-r--r--. 1 boincer umatlas      9348 Dec 13 09:11 runtime_log.err
[2025-12-13 09:11:31] -rw-r--r--. 1 boincer umatlas     21447 Dec 13 09:11 stderr.txt
[2025-12-13 09:11:31] HITS file was successfully produced:
[2025-12-13 09:11:31] -rw-------. 1 boincer umatlas 149063751 Dec 13 09:09 shared/HITS.pool.root.1
[2025-12-13 09:11:31]  *** Contents of shared directory: ***
[2025-12-13 09:11:31] total 339240
[2025-12-13 09:11:31] -rw-r--r--. 2 boincer umatlas 193126701 Dec 13 00:05 ATLAS.root_0
[2025-12-13 09:11:31] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 00:05 start_atlas.sh
[2025-12-13 09:11:31] -rw-r--r--. 2 boincer umatlas    592414 Dec 13 00:05 input.tar.gz
[2025-12-13 09:11:31] -rw-------. 1 boincer umatlas 149063751 Dec 13 09:09 HITS.pool.root.1
[2025-12-13 09:11:31] -rw-------. 1 boincer umatlas   4567040 Dec 13 09:11 result.tar.gz
09:11:32 (275096): run_atlas exited; CPU time 44077.842866
09:11:32 (275096): called boinc_finish(0)

</stderr_txt>
]]>

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