Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:50 (3183688): wrapper (7.7.26015): starting
00:01:50 (3183688): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 00:01:50] Arguments: --nthreads 12
[2025-12-13 00:01:50] Threads: 12
[2025-12-13 00:01:50] Checking for CVMFS
[2025-12-13 00:01:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 00:01:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 00:01:52] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 00:01:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 00:01:55] 2.13.2.0 5582 56935 214748 153948 0 525 20763291 39288833 10308 16776704 0 46653974 99.644 46323254 37744 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 00:01:55] CVMFS is ok
[2025-12-13 00:01:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 00:01:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 00:01:55] Further information can be found at the LHC@home message board.
[2025-12-13 00:01:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 00:01:55] Checking for apptainer binary...
[2025-12-13 00:01:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 00:01:55] Running /usr/bin/apptainer --version
[2025-12-13 00:01:56] apptainer version 1.4.4-1.el9
[2025-12-13 00:01:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 00:01:58] c-210-22.aglt2.org
[2025-12-13 00:01:58] apptainer works
[2025-12-13 00:01:58] Set ATHENA_PROC_NUMBER=12
[2025-12-13 00:01:58] Set ATHENA_CORE_NUMBER=12
[2025-12-13 00:01:58] Starting ATLAS job with PandaID=6928956767
[2025-12-13 00:01:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 12:21:40]  *** The last 200 lines of the pilot log: ***
[2025-12-13 12:21:40] 2025-12-13 16:41:14,428 | INFO     | fitting pss+swap vs Time
[2025-12-13 12:21:40] 2025-12-13 16:41:14,429 | INFO     | sum of square deviations: 97931739820.8488
[2025-12-13 12:21:40] 2025-12-13 16:41:14,455 | INFO     | sum of deviations: 983070402620.3698
[2025-12-13 12:21:40] 2025-12-13 16:41:14,455 | INFO     | mean x: 1765623260.041116
[2025-12-13 12:21:40] 2025-12-13 16:41:14,455 | INFO     | mean y: 2559175.87958884
[2025-12-13 12:21:40] 2025-12-13 16:41:14,455 | INFO     | intersect: -17721336797.98718
[2025-12-13 12:21:40] 2025-12-13 16:41:14,456 | INFO     | chi2: 10.227263679720824
[2025-12-13 12:21:40] 2025-12-13 16:41:14,457 | INFO     | sum of square deviations: 95791020788.5137
[2025-12-13 12:21:40] 2025-12-13 16:41:14,481 | INFO     | sum of deviations: 1065348515373.7006
[2025-12-13 12:21:40] 2025-12-13 16:41:14,481 | INFO     | mean x: 1765623107.5606508
[2025-12-13 12:21:40] 2025-12-13 16:41:14,481 | INFO     | mean y: 2565007.409763314
[2025-12-13 12:21:40] 2025-12-13 16:41:14,482 | INFO     | intersect: -19633972330.490597
[2025-12-13 12:21:40] 2025-12-13 16:41:14,483 | INFO     | chi2: 8.815651223032118
[2025-12-13 12:21:40] 2025-12-13 16:41:14,483 | INFO     | current chi2=8.815651223032118 (change=13.80244512017157 %)
[2025-12-13 12:21:40] 2025-12-13 16:41:14,483 | INFO     | right removable region: 675
[2025-12-13 12:21:40] 2025-12-13 16:41:14,484 | INFO     | sum of square deviations: 95789922790.5137
[2025-12-13 12:21:40] 2025-12-13 16:41:14,507 | INFO     | sum of deviations: 752653947000.9646
[2025-12-13 12:21:40] 2025-12-13 16:41:14,508 | INFO     | mean x: 1765623412.5606508
[2025-12-13 12:21:40] 2025-12-13 16:41:14,508 | INFO     | mean y: 2575576.171597633
[2025-12-13 12:21:40] 2025-12-13 16:41:14,508 | INFO     | intersect: -13870527059.972198
[2025-12-13 12:21:40] 2025-12-13 16:41:14,513 | INFO     | chi2: 6.268293336231445
[2025-12-13 12:21:40] 2025-12-13 16:41:14,513 | INFO     | current chi2=6.268293336231445 (change=38.70996649220496 %)
[2025-12-13 12:21:40] 2025-12-13 16:41:14,514 | INFO     | sum of square deviations: 93679630811.97006
[2025-12-13 12:21:40] 2025-12-13 16:41:14,541 | INFO     | sum of deviations: 562290272090.0736
[2025-12-13 12:21:40] 2025-12-13 16:41:14,541 | INFO     | mean x: 1765623565.0774963
[2025-12-13 12:21:40] 2025-12-13 16:41:14,542 | INFO     | mean y: 2589330.8062593145
[2025-12-13 12:21:40] 2025-12-13 16:41:14,542 | INFO     | intersect: -10595156905.072538
[2025-12-13 12:21:40] 2025-12-13 16:41:14,543 | INFO     | chi2: 3.7112332412876112
[2025-12-13 12:21:40] 2025-12-13 16:41:14,543 | INFO     | current chi2=3.7112332412876112 (change=40.79356146534715 %)
[2025-12-13 12:21:40] 2025-12-13 16:41:14,545 | INFO     | sum of square deviations: 91600590022.72836
[2025-12-13 12:21:40] 2025-12-13 16:41:14,566 | INFO     | sum of deviations: 444877146249.5991
[2025-12-13 12:21:40] 2025-12-13 16:41:14,566 | INFO     | mean x: 1765623717.5930932
[2025-12-13 12:21:40] 2025-12-13 16:41:14,567 | INFO     | mean y: 2597935.8693693695
[2025-12-13 12:21:40] 2025-12-13 16:41:14,567 | INFO     | intersect: -8572517580.728559
[2025-12-13 12:21:40] 2025-12-13 16:41:14,573 | INFO     | chi2: 2.762915682601556
[2025-12-13 12:21:40] 2025-12-13 16:41:14,573 | INFO     | current chi2=2.762915682601556 (change=25.552626230439685 %)
[2025-12-13 12:21:40] 2025-12-13 16:41:14,574 | INFO     | sum of square deviations: 89552770691.4106
[2025-12-13 12:21:40] 2025-12-13 16:41:14,583 | INFO     | monitor loop #2246: job 0:6928956767 is in state 'finished'
[2025-12-13 12:21:40] 2025-12-13 16:41:14,584 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 12:21:40] 2025-12-13 16:41:14,596 | INFO     | sum of deviations: 368657221315.331
[2025-12-13 12:21:40] 2025-12-13 16:41:14,596 | INFO     | mean x: 1765623870.0998487
[2025-12-13 12:21:40] 2025-12-13 16:41:14,596 | INFO     | mean y: 2603612.313161876
[2025-12-13 12:21:40] 2025-12-13 16:41:14,596 | INFO     | intersect: -7265848104.072011
[2025-12-13 12:21:40] 2025-12-13 16:41:14,602 | INFO     | chi2: 2.4131186199003385
[2025-12-13 12:21:40] 2025-12-13 16:41:14,602 | INFO     | current chi2=2.4131186199003385 (change=12.660432053860196 %)
[2025-12-13 12:21:40] 2025-12-13 16:41:14,602 | INFO     | left removable region: 40
[2025-12-13 12:21:40] 2025-12-13 16:41:14,603 | INFO     | sum of square deviations: 79395419167.24374
[2025-12-13 12:21:40] 2025-12-13 16:41:14,623 | INFO     | sum of deviations: 239565741895.73224
[2025-12-13 12:21:40] 2025-12-13 16:41:14,623 | INFO     | mean x: 1765624297.1417322
[2025-12-13 12:21:40] 2025-12-13 16:41:14,623 | INFO     | mean y: 2626584.8251968506
[2025-12-13 12:21:40] 2025-12-13 16:41:14,624 | INFO     | intersect: -5324923783.828823
[2025-12-13 12:21:40] 2025-12-13 16:41:14,629 | INFO     | chi2: 0.2607067480107545
[2025-12-13 12:21:40] 2025-12-13 16:41:14,629 | INFO     | current memory leak: 3.02 B/s (using 635 data points, chi2=0.26)
[2025-12-13 12:21:40] 2025-12-13 16:41:14,630 | INFO     | could have reported an average CPU frequency of 2599 MHz (26 samples)
[2025-12-13 12:21:40] 2025-12-13 16:41:14,630 | INFO     | ..............................
[2025-12-13 12:21:40] 2025-12-13 16:41:14,630 | INFO     | . Timing measurements:
[2025-12-13 12:21:40] 2025-12-13 16:41:14,630 | INFO     | . get job = 1 s
[2025-12-13 12:21:40] 2025-12-13 16:41:14,631 | INFO     | . initial setup = 14 s
[2025-12-13 12:21:40] 2025-12-13 16:41:14,631 | INFO     | . payload setup = 89 s
[2025-12-13 12:21:40] 2025-12-13 16:41:14,631 | INFO     | . stage-in = 1 s
[2025-12-13 12:21:40] 2025-12-13 16:41:14,631 | INFO     | . payload execution = 41542 s
[2025-12-13 12:21:40] 2025-12-13 16:41:14,631 | INFO     | . stage-out = 12 s
[2025-12-13 12:21:40] 2025-12-13 16:41:14,631 | INFO     | . log creation = 3 s
[2025-12-13 12:21:40] 2025-12-13 16:41:14,631 | INFO     | ..............................
[2025-12-13 12:21:40] 2025-12-13 16:41:15,613 | INFO     | time since job start (41820s) is within the limit (174528.0s)
[2025-12-13 12:21:40] 2025-12-13 16:41:16,024 | INFO     | 
[2025-12-13 12:21:40] 2025-12-13 16:41:16,024 | INFO     | job summary report
[2025-12-13 12:21:40] 2025-12-13 16:41:16,024 | INFO     | --------------------------------------------------
[2025-12-13 12:21:40] 2025-12-13 16:41:16,024 | INFO     | PanDA job id: 6928956767
[2025-12-13 12:21:40] 2025-12-13 16:41:16,024 | INFO     | task id: 47886933
[2025-12-13 12:21:40] 2025-12-13 16:41:16,024 | INFO     | errors: (none)
[2025-12-13 12:21:40] 2025-12-13 16:41:16,024 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 12:21:40] 2025-12-13 16:41:16,025 | INFO     | pilot state: finished 
[2025-12-13 12:21:40] 2025-12-13 16:41:16,025 | INFO     | transexitcode: 0
[2025-12-13 12:21:40] 2025-12-13 16:41:16,025 | INFO     | exeerrorcode: 0
[2025-12-13 12:21:40] 2025-12-13 16:41:16,025 | INFO     | exeerrordiag: 
[2025-12-13 12:21:40] 2025-12-13 16:41:16,025 | INFO     | exitcode: 0
[2025-12-13 12:21:40] 2025-12-13 16:41:16,025 | INFO     | exitmsg: OK
[2025-12-13 12:21:40] 2025-12-13 16:41:16,025 | INFO     | cpuconsumptiontime: 54405 s
[2025-12-13 12:21:40] 2025-12-13 16:41:16,025 | INFO     | nevents: 400
[2025-12-13 12:21:40] 2025-12-13 16:41:16,025 | INFO     | neventsw: 0
[2025-12-13 12:21:40] 2025-12-13 16:41:16,026 | INFO     | pid: 3201193
[2025-12-13 12:21:40] 2025-12-13 16:41:16,026 | INFO     | pgrp: 3201193
[2025-12-13 12:21:40] 2025-12-13 16:41:16,026 | INFO     | corecount: 12
[2025-12-13 12:21:40] 2025-12-13 16:41:16,026 | INFO     | event service: False
[2025-12-13 12:21:40] 2025-12-13 16:41:16,026 | INFO     | sizes: {0: 2283131, 2: 2283816, 4: 2283816, 6: 2284015, 8: 2284071, 22: 2284071, 33: 2284227, 45: 2284283, 57: 2284311, 63: 2284601, 70: 2284629, 41637: 2327594, 4
[2025-12-13 12:21:40] 2025-12-13 16:41:16,026 | INFO     | --------------------------------------------------
[2025-12-13 12:21:40] 2025-12-13 16:41:16,026 | INFO     | 
[2025-12-13 12:21:40] 2025-12-13 16:41:16,026 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-13 12:21:40] 2025-12-13 16:41:16,351 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 12:21:40] 2025-12-13 16:41:16,351 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 12:21:40] 2025-12-13 16:41:16,351 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 12:21:40] 2025-12-13 16:41:16,351 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 12:21:40] 2025-12-13 16:41:16,351 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 12:21:40] 2025-12-13 16:41:16,351 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 12:21:40] 2025-12-13 16:41:16,352 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 12:21:40] 2025-12-13 16:41:16,352 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 12:21:40] 2025-12-13 16:41:16,352 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 12:21:40] 2025-12-13 16:41:16,352 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 12:21:40] 2025-12-13 16:41:16,352 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 12:21:40] 2025-12-13 16:41:16,352 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 12:21:40] 2025-12-13 16:41:16,352 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 12:21:40] 2025-12-13 16:41:16,352 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 12:21:40] 2025-12-13 16:41:16,352 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 12:21:40] 2025-12-13 16:41:16,352 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 12:21:40] 2025-12-13 16:41:16,353 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 12:21:40] 2025-12-13 16:41:16,353 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 12:21:40] 2025-12-13 16:41:16,353 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 12:21:40] 2025-12-13 16:41:16,353 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 12:21:40] 2025-12-13 16:41:16,353 | INFO     | job 6928956767 has completed (purged errors)
[2025-12-13 12:21:40] 2025-12-13 16:41:16,353 | INFO     | overall cleanup function is called
[2025-12-13 12:21:40] 2025-12-13 16:41:17,410 | INFO     | --- collectZombieJob: --- 10, [3201193]
[2025-12-13 12:21:40] 2025-12-13 16:41:17,410 | INFO     | zombie collector waiting for pid 3201193
[2025-12-13 12:21:40] 2025-12-13 16:41:17,410 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 12:21:40] 2025-12-13 16:41:17,410 | INFO     | collected zombie processes
[2025-12-13 12:21:40] 2025-12-13 16:41:17,410 | INFO     | will attempt to kill all subprocesses of pid=3201193
[2025-12-13 12:21:40] 2025-12-13 16:41:17,717 | INFO     | process IDs to be killed: [3201193] (in reverse order)
[2025-12-13 12:21:40] 2025-12-13 16:41:17,811 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 12:21:40] 2025-12-13 16:41:17,812 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 12:21:40] 2025-12-13 16:41:17,828 | INFO     | did not find any defunct processes belonging to 3201193
[2025-12-13 12:21:40] 2025-12-13 16:41:17,844 | INFO     | did not find any defunct processes belonging to 3201193
[2025-12-13 12:21:40] 2025-12-13 16:41:17,844 | INFO     | ready for new job
[2025-12-13 12:21:40] 2025-12-13 16:41:17,844 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 12:21:40] 2025-12-13 16:41:17,851 | INFO     | ***************************************
[2025-12-13 12:21:40] 2025-12-13 16:41:17,852 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 12:21:40] 2025-12-13 16:41:17,852 | INFO     | ***************************************
[2025-12-13 12:21:40] 2025-12-13 16:41:17,852 | INFO     | 
[2025-12-13 12:21:40] 2025-12-13 16:41:17,854 | INFO     | architecture information:
[2025-12-13 12:21:40] 2025-12-13 16:41:17,858 | INFO     | executing command: cat /etc/os-release
[2025-12-13 12:21:40] 2025-12-13 16:41:18,038 | INFO     | cat /etc/os-release:
[2025-12-13 12:21:40] NAME="CentOS Linux"
[2025-12-13 12:21:40] VERSION="7 (Core)"
[2025-12-13 12:21:40] ID="centos"
[2025-12-13 12:21:40] ID_LIKE="rhel fedora"
[2025-12-13 12:21:40] VERSION_ID="7"
[2025-12-13 12:21:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 12:21:40] ANSI_COLOR="0;31"
[2025-12-13 12:21:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 12:21:40] HOME_URL="https://www.centos.org/"
[2025-12-13 12:21:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 12:21:40] 
[2025-12-13 12:21:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 12:21:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 12:21:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 12:21:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 12:21:40] 
[2025-12-13 12:21:40] 2025-12-13 16:41:18,039 | INFO     | ***************************************
[2025-12-13 12:21:40] 2025-12-13 16:41:18,564 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-13 12:21:40] 2025-12-13 16:41:18,739 | INFO     | sufficient remaining disk space (52833550336 B)
[2025-12-13 12:21:40] 2025-12-13 16:41:18,739 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 12:21:40] 2025-12-13 16:41:18,740 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 12:21:40] 2025-12-13 16:41:18,740 | INFO     | update_server=False
[2025-12-13 12:21:40] 2025-12-13 16:41:18,740 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 12:21:40] 2025-12-13 16:41:18,762 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 12:21:40] 2025-12-13 16:41:18,763 | INFO     | aborting loop
[2025-12-13 12:21:40] 2025-12-13 16:41:18,880 | INFO     | all job control threads have been joined
[2025-12-13 12:21:40] 2025-12-13 16:41:19,438 | INFO     | all data control threads have been joined
[2025-12-13 12:21:40] 2025-12-13 16:41:19,670 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 12:21:40] 2025-12-13 16:41:19,776 | INFO     | [job] job monitor thread has finished
[2025-12-13 12:21:40] 2025-12-13 16:41:19,789 | INFO     | [job] retrieve thread has finished
[2025-12-13 12:21:40] 2025-12-13 16:41:19,808 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 12:21:40] 2025-12-13 16:41:19,886 | INFO     | [job] control thread has finished
[2025-12-13 12:21:40] 2025-12-13 16:41:20,175 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 12:21:40] 2025-12-13 16:41:20,183 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 12:21:40] 2025-12-13 16:41:20,198 | INFO     | [data] copytool_in thread has finished
[2025-12-13 12:21:40] 2025-12-13 16:41:20,207 | INFO     | [job] validate thread has finished
[2025-12-13 12:21:40] 2025-12-13 16:41:20,270 | INFO     | all payload control threads have been joined
[2025-12-13 12:21:40] 2025-12-13 16:41:20,479 | INFO     | [payload] validate_post thread has finished
[2025-12-13 12:21:40] 2025-12-13 16:41:20,482 | INFO     | [data] control thread has finished
[2025-12-13 12:21:40] 2025-12-13 16:41:20,549 | INFO     | [payload] failed_post thread has finished
[2025-12-13 12:21:40] 2025-12-13 16:41:21,062 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 12:21:40] 2025-12-13 16:41:21,229 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 12:21:40] 2025-12-13 16:41:21,276 | INFO     | [payload] control thread has finished
[2025-12-13 12:21:40] 2025-12-13 16:41:21,689 | INFO     | [data] copytool_out thread has finished
[2025-12-13 12:21:40] 2025-12-13 16:41:22,068 | INFO     | [job] queue monitor thread has finished
[2025-12-13 12:21:40] 2025-12-13 16:41:22,131 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 12:21:40] 2025-12-13 16:41:26,142 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 12:21:40] 2025-12-13 16:41:39,898 | INFO     | [monitor] cgroup control has ended
[2025-12-13 12:21:40] 2025-12-13 16:41:40,101 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140240773408576)>', '<ExcThread(monitor, started 140239993558784)>']
[2025-12-13 12:21:40] 2025-12-13 16:41:45,127 | INFO     | all workflow threads have been joined
[2025-12-13 12:21:40] 2025-12-13 16:41:45,128 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 12:21:40] 2025-12-13 16:41:45,128 | INFO     | traces error code: 0
[2025-12-13 12:21:40] 2025-12-13 16:41:45,128 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 12:21:40] 2025-12-13 16:41:51,202 | INFO     | PID=3189637 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-13 12:21:40] 2025-12-13 16:41:51,203 | INFO     | .. there are 8 such processes running
[2025-12-13 12:21:40] 2025-12-13 16:41:51,245 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 12:21:40] 2025-12-13 16:41:51,246 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 12:21:40] 2025-12-13 16:41:51,246 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 12:21:40] 2025-12-13 16:41:51,246 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 12:21:40] 2025-12-13 16:41:51,246 | INFO     | [monitor] control thread has ended
[2025-12-13 12:21:40] 2025-12-13 16:41:51,965 [wrapper] ==== pilot stdout END ====
[2025-12-13 12:21:40] 2025-12-13 16:41:52,024 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 12:21:40] 2025-12-13 16:41:52,097 [wrapper] pilotpid: 3189637
[2025-12-13 12:21:40] 2025-12-13 16:41:52,145 [wrapper] Pilot exit status: 0
[2025-12-13 12:21:40] 2025-12-13 16:41:52,253 [wrapper] pandaids: 6928956767
[2025-12-13 12:21:40] 2025-12-13 16:41:52,423 [wrapper] cleanup supervisor_pilot 4065331 3189638
[2025-12-13 12:21:40] 2025-12-13 16:41:52,467 [wrapper] Test setup, not cleaning
[2025-12-13 12:21:40] 2025-12-13 16:41:52,482 [wrapper] apfmon messages muted
[2025-12-13 12:21:40] 2025-12-13 16:41:52,515 [wrapper] ==== wrapper stdout END ====
[2025-12-13 12:21:40] 2025-12-13 16:41:52,638 [wrapper] ==== wrapper stderr END ====
[2025-12-13 12:21:40]  *** Error codes and diagnostics ***
[2025-12-13 12:21:40]     "exeErrorCode": 0,
[2025-12-13 12:21:40]     "exeErrorDiag": "",
[2025-12-13 12:21:40]     "pilotErrorCode": 0,
[2025-12-13 12:21:40]     "pilotErrorDiag": "",
[2025-12-13 12:21:40]  *** Listing of results directory ***
[2025-12-13 12:21:40] total 343088
[2025-12-13 12:21:40] -rw-r--r--. 1 boincer umatlas    579449 Dec 12 23:45 pilot3.tar.gz
[2025-12-13 12:21:40] -rw-r--r--. 1 boincer umatlas      5112 Dec 12 23:48 queuedata.json
[2025-12-13 12:21:40] -rwx------. 1 boincer umatlas     36322 Dec 12 23:48 runpilot2-wrapper.sh
[2025-12-13 12:21:40] -rw-r--r--. 1 boincer umatlas       100 Dec 13 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 12:21:40] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 13 00:01 run_atlas
[2025-12-13 12:21:40] -rw-r--r--. 1 boincer umatlas       105 Dec 13 00:01 job.xml
[2025-12-13 12:21:40] -rw-r--r--. 2 boincer umatlas 192153035 Dec 13 00:01 EVNT.47886929._000025.pool.root.1
[2025-12-13 12:21:40] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 00:01 start_atlas.sh
[2025-12-13 12:21:40] drwxrwx--x. 2 boincer umatlas      4096 Dec 13 00:01 shared
[2025-12-13 12:21:40] -rw-r--r--. 2 boincer umatlas    592393 Dec 13 00:01 input.tar.gz
[2025-12-13 12:21:40] -rw-r--r--. 1 boincer umatlas         0 Dec 13 00:01 boinc_lockfile
[2025-12-13 12:21:40] -rw-r--r--. 1 boincer umatlas      2510 Dec 13 00:01 pandaJob.out
[2025-12-13 12:21:40] -rw-------. 1 boincer umatlas        57 Dec 13 00:02 setup.sh.local
[2025-12-13 12:21:40] -rw-------. 1 boincer umatlas    991736 Dec 13 00:04 agis_schedconf.cvmfs.json
[2025-12-13 12:21:40] drwx------. 5 boincer umatlas      4096 Dec 13 00:04 pilot3
[2025-12-13 12:21:40] -rw-------. 1 boincer umatlas 143882603 Dec 13 11:37 HITS.47886933._000615.pool.root.1
[2025-12-13 12:21:40] -rw-r--r--. 1 boincer umatlas       531 Dec 13 11:38 boinc_task_state.xml
[2025-12-13 12:21:40] -rw-------. 1 boincer umatlas      1041 Dec 13 11:40 memory_monitor_summary.json
[2025-12-13 12:21:40] -rw-------. 1 boincer umatlas   1516240 Dec 13 11:40 agis_ddmendpoints.agis.ALL.json
[2025-12-13 12:21:40] -rw-------. 1 boincer umatlas    847817 Dec 13 11:40 log.47886933._000615.job.log.tgz.1
[2025-12-13 12:21:40] -rw-------. 1 boincer umatlas      7824 Dec 13 11:41 heartbeat.json
[2025-12-13 12:21:40] -rw-------. 1 boincer umatlas        95 Dec 13 11:41 pilot_heartbeat.json
[2025-12-13 12:21:40] -rw-------. 1 boincer umatlas       822 Dec 13 11:41 pilotlog.txt
[2025-12-13 12:21:40] -rw-------. 1 boincer umatlas   4837310 Dec 13 11:41 log.47886933._000615.job.log.1
[2025-12-13 12:21:40] -rw-------. 1 boincer umatlas       357 Dec 13 11:41 output.list
[2025-12-13 12:21:40] -rw-r--r--. 1 boincer umatlas       620 Dec 13 11:41 runtime_log
[2025-12-13 12:21:40] -rw-------. 1 boincer umatlas   5703680 Dec 13 11:41 result.tar.gz
[2025-12-13 12:21:40] -rw-------. 1 boincer umatlas       658 Dec 13 11:41 sssMDmfjWo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGkNKDmuJ5i1m.diag
[2025-12-13 12:21:40] -rw-r--r--. 1 boincer umatlas      9345 Dec 13 11:41 runtime_log.err
[2025-12-13 12:21:40] -rw-r--r--. 1 boincer umatlas      6662 Dec 13 12:10 init_data.xml
[2025-12-13 12:21:40] -rw-r--r--. 1 boincer umatlas      8192 Dec 13 12:21 boinc_mmap_file
[2025-12-13 12:21:40] -rw-r--r--. 1 boincer umatlas        28 Dec 13 12:21 wrapper_checkpoint.txt
[2025-12-13 12:21:40] -rw-r--r--. 1 boincer umatlas     20872 Dec 13 12:21 stderr.txt
[2025-12-13 12:21:40] HITS file was successfully produced:
[2025-12-13 12:21:40] -rw-------. 1 boincer umatlas 143882603 Dec 13 11:37 shared/HITS.pool.root.1
[2025-12-13 12:21:40]  *** Contents of shared directory: ***
[2025-12-13 12:21:40] total 334340
[2025-12-13 12:21:40] -rw-r--r--. 2 boincer umatlas 192153035 Dec 13 00:01 ATLAS.root_0
[2025-12-13 12:21:40] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 00:01 start_atlas.sh
[2025-12-13 12:21:40] -rw-r--r--. 2 boincer umatlas    592393 Dec 13 00:01 input.tar.gz
[2025-12-13 12:21:40] -rw-------. 1 boincer umatlas 143882603 Dec 13 11:37 HITS.pool.root.1
[2025-12-13 12:21:40] -rw-------. 1 boincer umatlas   5703680 Dec 13 11:41 result.tar.gz
12:21:42 (3183688): run_atlas exited; CPU time 55215.500882
12:21:42 (3183688): called boinc_finish(0)

</stderr_txt>
]]>

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