Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:55:14 (31135): wrapper (7.7.26015): starting
22:55:14 (31135): wrapper: running run_atlas (--nthreads 8)
[2025-12-12 22:55:14] Arguments: --nthreads 8
[2025-12-12 22:55:14] Threads: 8
[2025-12-12 22:55:14] Checking for CVMFS
[2025-12-12 22:55:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-12 22:55:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-12 22:55:14] Running cvmfs_config stat atlas.cern.ch
[2025-12-12 22:55:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-12 22:55:15] 2.11.2.0 2895 97266 94508 153946 2 1 13132951 20275201 1 130560 0 28059793 99.847 6518719 33152 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-12 22:55:15] CVMFS is ok
[2025-12-12 22:55:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-12 22:55:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-12 22:55:15] Further information can be found at the LHC@home message board.
[2025-12-12 22:55:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-12 22:55:15] Checking for apptainer binary...
[2025-12-12 22:55:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-12 22:55:15] Running /usr/bin/apptainer --version
[2025-12-12 22:55:15] apptainer version 1.3.2-1.el7
[2025-12-12 22:55:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-12 22:55:17] c-204-7.aglt2.org
[2025-12-12 22:55:17] apptainer works
[2025-12-12 22:55:17] Set ATHENA_PROC_NUMBER=8
[2025-12-12 22:55:17] Set ATHENA_CORE_NUMBER=8
[2025-12-12 22:55:17] Starting ATLAS job with PandaID=6928901916
[2025-12-12 22:55:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 01:19:55]  *** The last 200 lines of the pilot log: ***
[2025-12-13 01:19:55] 2025-12-13 06:19:14,312 | INFO     | monitor loop #633: job 0:6928901916 is in state 'finished'
[2025-12-13 01:19:55] 2025-12-13 06:19:14,312 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 01:19:55] 2025-12-13 06:19:16,287 | INFO     | time since job start (8622s) is within the limit (174528.0s)
[2025-12-13 01:19:55] 2025-12-13 06:19:16,816 | INFO     | monitor loop #634: job 0:6928901916 is in state 'finished'
[2025-12-13 01:19:55] 2025-12-13 06:19:16,816 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 01:19:55] 2025-12-13 06:19:18,291 | INFO     | time since job start (8624s) is within the limit (174528.0s)
[2025-12-13 01:19:55] 2025-12-13 06:19:19,318 | INFO     | monitor loop #635: job 0:6928901916 is in state 'finished'
[2025-12-13 01:19:55] 2025-12-13 06:19:19,318 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 01:19:55] 2025-12-13 06:19:19,745 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 01:19:55] 2025-12-13 06:19:19,748 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1629.25
[2025-12-13 01:19:55] 2025-12-13 06:19:19,749 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6928901916/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 01:19:55] 2025-12-13 06:19:19,750 | INFO     | extracted standard info from prmon json
[2025-12-13 01:19:55] 2025-12-13 06:19:19,750 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 01:19:55] 2025-12-13 06:19:19,750 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 01:19:55] 2025-12-13 06:19:19,751 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 01:19:55] 2025-12-13 06:19:19,751 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 01:19:55] 2025-12-13 06:19:19,754 | INFO     | fitting pss+swap vs Time
[2025-12-13 01:19:55] 2025-12-13 06:19:19,754 | INFO     | sum of square deviations: 869188390.0
[2025-12-13 01:19:55] 2025-12-13 06:19:19,755 | INFO     | sum of deviations: 11344474329.000002
[2025-12-13 01:19:55] 2025-12-13 06:19:19,755 | INFO     | mean x: 1765602436.0
[2025-12-13 01:19:55] 2025-12-13 06:19:19,755 | INFO     | mean y: 2482346.489361702
[2025-12-13 01:19:55] 2025-12-13 06:19:19,756 | INFO     | intersect: -23041810169.22391
[2025-12-13 01:19:55] 2025-12-13 06:19:19,756 | INFO     | chi2: 1.533085912290532
[2025-12-13 01:19:55] 2025-12-13 06:19:19,756 | INFO     | sum of square deviations: 779958810.0
[2025-12-13 01:19:55] 2025-12-13 06:19:19,757 | INFO     | sum of deviations: 10942603126.5
[2025-12-13 01:19:55] 2025-12-13 06:19:19,757 | INFO     | mean x: 1765602283.5
[2025-12-13 01:19:55] 2025-12-13 06:19:19,757 | INFO     | mean y: 2481659.375
[2025-12-13 01:19:55] 2025-12-13 06:19:19,757 | INFO     | intersect: -24768422675.409855
[2025-12-13 01:19:55] 2025-12-13 06:19:19,758 | INFO     | chi2: 1.53510649938071
[2025-12-13 01:19:55] 2025-12-13 06:19:19,758 | INFO     | current chi2=1.53510649938071 (change=-0.13179868616488996 %)
[2025-12-13 01:19:55] 2025-12-13 06:19:19,758 | INFO     | right removable region: 135
[2025-12-13 01:19:55] 2025-12-13 06:19:19,758 | INFO     | sum of square deviations: 779958810.0
[2025-12-13 01:19:55] 2025-12-13 06:19:19,759 | INFO     | sum of deviations: -9243115219.0
[2025-12-13 01:19:55] 2025-12-13 06:19:19,759 | INFO     | mean x: 1765602588.5
[2025-12-13 01:19:55] 2025-12-13 06:19:19,759 | INFO     | mean y: 2516935.529411765
[2025-12-13 01:19:55] 2025-12-13 06:19:19,759 | INFO     | intersect: 20926273353.47428
[2025-12-13 01:19:55] 2025-12-13 06:19:19,760 | INFO     | chi2: 0.09252629486149669
[2025-12-13 01:19:55] 2025-12-13 06:19:19,760 | INFO     | current chi2=0.09252629486149669 (change=93.9647025571283 %)
[2025-12-13 01:19:55] 2025-12-13 06:19:19,760 | INFO     | sum of square deviations: 697054930.0
[2025-12-13 01:19:55] 2025-12-13 06:19:19,761 | INFO     | sum of deviations: -6266650231.0
[2025-12-13 01:19:55] 2025-12-13 06:19:19,761 | INFO     | mean x: 1765602741.0
[2025-12-13 01:19:55] 2025-12-13 06:19:19,761 | INFO     | mean y: 2511379.2977099237
[2025-12-13 01:19:55] 2025-12-13 06:19:19,761 | INFO     | intersect: 15875600211.395752
[2025-12-13 01:19:55] 2025-12-13 06:19:19,761 | INFO     | chi2: 0.07267962164397586
[2025-12-13 01:19:55] 2025-12-13 06:19:19,762 | INFO     | current chi2=0.07267962164397586 (change=21.44976543935912 %)
[2025-12-13 01:19:55] 2025-12-13 06:19:19,762 | INFO     | left removable region: 20
[2025-12-13 01:19:55] 2025-12-13 06:19:19,762 | INFO     | sum of square deviations: 471562330.0
[2025-12-13 01:19:55] 2025-12-13 06:19:19,763 | INFO     | sum of deviations: 1266649445.0
[2025-12-13 01:19:55] 2025-12-13 06:19:19,763 | INFO     | mean x: 1765602863.0
[2025-12-13 01:19:55] 2025-12-13 06:19:19,763 | INFO     | mean y: 2495567.860869565
[2025-12-13 01:19:55] 2025-12-13 06:19:19,763 | INFO     | intersect: -4740037378.970064
[2025-12-13 01:19:55] 2025-12-13 06:19:19,763 | INFO     | chi2: 0.0002901236499369396
[2025-12-13 01:19:55] 2025-12-13 06:19:19,763 | INFO     | current memory leak: 2.69 B/s (using 115 data points, chi2=0.00)
[2025-12-13 01:19:55] 2025-12-13 06:19:19,764 | INFO     | could have reported an average CPU frequency of 1945 MHz (8 samples)
[2025-12-13 01:19:55] 2025-12-13 06:19:19,764 | INFO     | ..............................
[2025-12-13 01:19:55] 2025-12-13 06:19:19,764 | INFO     | . Timing measurements:
[2025-12-13 01:19:55] 2025-12-13 06:19:19,764 | INFO     | . get job = 0 s
[2025-12-13 01:19:55] 2025-12-13 06:19:19,764 | INFO     | . initial setup = 2 s
[2025-12-13 01:19:55] 2025-12-13 06:19:19,765 | INFO     | . payload setup = 8 s
[2025-12-13 01:19:55] 2025-12-13 06:19:19,765 | INFO     | . stage-in = 0 s
[2025-12-13 01:19:55] 2025-12-13 06:19:19,765 | INFO     | . payload execution = 8583 s
[2025-12-13 01:19:55] 2025-12-13 06:19:19,765 | INFO     | . stage-out = 0 s
[2025-12-13 01:19:55] 2025-12-13 06:19:19,765 | INFO     | . log creation = 0 s
[2025-12-13 01:19:55] 2025-12-13 06:19:19,765 | INFO     | ..............................
[2025-12-13 01:19:55] 2025-12-13 06:19:19,862 | INFO     | 
[2025-12-13 01:19:55] 2025-12-13 06:19:19,863 | INFO     | job summary report
[2025-12-13 01:19:55] 2025-12-13 06:19:19,863 | INFO     | --------------------------------------------------
[2025-12-13 01:19:55] 2025-12-13 06:19:19,863 | INFO     | PanDA job id: 6928901916
[2025-12-13 01:19:55] 2025-12-13 06:19:19,863 | INFO     | task id: 47886831
[2025-12-13 01:19:55] 2025-12-13 06:19:19,863 | INFO     | errors: (none)
[2025-12-13 01:19:55] 2025-12-13 06:19:19,863 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 01:19:55] 2025-12-13 06:19:19,863 | INFO     | pilot state: finished 
[2025-12-13 01:19:55] 2025-12-13 06:19:19,864 | INFO     | transexitcode: 0
[2025-12-13 01:19:55] 2025-12-13 06:19:19,864 | INFO     | exeerrorcode: 0
[2025-12-13 01:19:55] 2025-12-13 06:19:19,864 | INFO     | exeerrordiag: 
[2025-12-13 01:19:55] 2025-12-13 06:19:19,864 | INFO     | exitcode: 0
[2025-12-13 01:19:55] 2025-12-13 06:19:19,864 | INFO     | exitmsg: OK
[2025-12-13 01:19:55] 2025-12-13 06:19:19,864 | INFO     | cpuconsumptiontime: 63433 s
[2025-12-13 01:19:55] 2025-12-13 06:19:19,864 | INFO     | nevents: 400
[2025-12-13 01:19:55] 2025-12-13 06:19:19,864 | INFO     | neventsw: 0
[2025-12-13 01:19:55] 2025-12-13 06:19:19,865 | INFO     | pid: 8893
[2025-12-13 01:19:55] 2025-12-13 06:19:19,865 | INFO     | pgrp: 8893
[2025-12-13 01:19:55] 2025-12-13 06:19:19,865 | INFO     | corecount: 8
[2025-12-13 01:19:55] 2025-12-13 06:19:19,865 | INFO     | event service: False
[2025-12-13 01:19:55] 2025-12-13 06:19:19,865 | INFO     | sizes: {0: 2283816, 1: 2284015, 7: 2284277, 11: 2284305, 8595: 2312202, 8597: 2321200, 8598: 2321384, 8608: 2321578}
[2025-12-13 01:19:55] 2025-12-13 06:19:19,865 | INFO     | --------------------------------------------------
[2025-12-13 01:19:55] 2025-12-13 06:19:19,865 | INFO     | 
[2025-12-13 01:19:55] 2025-12-13 06:19:19,866 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 01:19:55] 2025-12-13 06:19:19,892 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 01:19:55] 2025-12-13 06:19:19,893 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 01:19:55] 2025-12-13 06:19:19,893 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 01:19:55] 2025-12-13 06:19:19,893 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 01:19:55] 2025-12-13 06:19:19,893 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 01:19:55] 2025-12-13 06:19:19,893 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 01:19:55] 2025-12-13 06:19:19,893 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 01:19:55] 2025-12-13 06:19:19,894 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 01:19:55] 2025-12-13 06:19:19,894 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 01:19:55] 2025-12-13 06:19:19,894 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 01:19:55] 2025-12-13 06:19:19,894 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 01:19:55] 2025-12-13 06:19:19,894 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 01:19:55] 2025-12-13 06:19:19,894 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 01:19:55] 2025-12-13 06:19:19,894 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 01:19:55] 2025-12-13 06:19:19,895 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 01:19:55] 2025-12-13 06:19:19,895 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 01:19:55] 2025-12-13 06:19:19,895 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 01:19:55] 2025-12-13 06:19:19,895 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 01:19:55] 2025-12-13 06:19:19,895 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 01:19:55] 2025-12-13 06:19:19,895 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 01:19:55] 2025-12-13 06:19:19,895 | INFO     | job 6928901916 has completed (purged errors)
[2025-12-13 01:19:55] 2025-12-13 06:19:19,896 | INFO     | overall cleanup function is called
[2025-12-13 01:19:55] 2025-12-13 06:19:20,899 | INFO     | --- collectZombieJob: --- 10, [8893]
[2025-12-13 01:19:55] 2025-12-13 06:19:20,899 | INFO     | zombie collector waiting for pid 8893
[2025-12-13 01:19:55] 2025-12-13 06:19:20,899 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 01:19:55] 2025-12-13 06:19:20,899 | INFO     | collected zombie processes
[2025-12-13 01:19:55] 2025-12-13 06:19:20,900 | INFO     | will attempt to kill all subprocesses of pid=8893
[2025-12-13 01:19:55] 2025-12-13 06:19:20,995 | INFO     | process IDs to be killed: [8893] (in reverse order)
[2025-12-13 01:19:55] 2025-12-13 06:19:21,059 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 01:19:55] 2025-12-13 06:19:21,059 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 01:19:55] 2025-12-13 06:19:21,063 | INFO     | did not find any defunct processes belonging to 8893
[2025-12-13 01:19:55] 2025-12-13 06:19:21,065 | INFO     | did not find any defunct processes belonging to 8893
[2025-12-13 01:19:55] 2025-12-13 06:19:21,066 | INFO     | ready for new job
[2025-12-13 01:19:55] 2025-12-13 06:19:21,066 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 01:19:55] 2025-12-13 06:19:21,067 | INFO     | ***************************************
[2025-12-13 01:19:55] 2025-12-13 06:19:21,068 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 01:19:55] 2025-12-13 06:19:21,068 | INFO     | ***************************************
[2025-12-13 01:19:55] 2025-12-13 06:19:21,068 | INFO     | 
[2025-12-13 01:19:55] 2025-12-13 06:19:21,068 | INFO     | architecture information:
[2025-12-13 01:19:55] 2025-12-13 06:19:21,069 | INFO     | executing command: cat /etc/os-release
[2025-12-13 01:19:55] 2025-12-13 06:19:21,085 | INFO     | cat /etc/os-release:
[2025-12-13 01:19:55] NAME="CentOS Linux"
[2025-12-13 01:19:55] VERSION="7 (Core)"
[2025-12-13 01:19:55] ID="centos"
[2025-12-13 01:19:55] ID_LIKE="rhel fedora"
[2025-12-13 01:19:55] VERSION_ID="7"
[2025-12-13 01:19:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 01:19:55] ANSI_COLOR="0;31"
[2025-12-13 01:19:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 01:19:55] HOME_URL="https://www.centos.org/"
[2025-12-13 01:19:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 01:19:55] 
[2025-12-13 01:19:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 01:19:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 01:19:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 01:19:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 01:19:55] 
[2025-12-13 01:19:55] 2025-12-13 06:19:21,085 | INFO     | ***************************************
[2025-12-13 01:19:55] 2025-12-13 06:19:21,588 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 01:19:55] 2025-12-13 06:19:21,607 | INFO     | sufficient remaining disk space (18676187136 B)
[2025-12-13 01:19:55] 2025-12-13 06:19:21,608 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 01:19:55] 2025-12-13 06:19:21,608 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 01:19:55] 2025-12-13 06:19:21,608 | INFO     | update_server=False
[2025-12-13 01:19:55] 2025-12-13 06:19:21,608 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 01:19:55] 2025-12-13 06:19:21,609 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 01:19:55] 2025-12-13 06:19:21,822 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-13 01:19:55] 2025-12-13 06:19:21,822 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-13 01:19:55] 2025-12-13 06:19:21,822 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 01:19:55] 2025-12-13 06:19:21,822 | INFO     | will abort loop
[2025-12-13 01:19:55] 2025-12-13 06:19:22,032 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 01:19:55] 2025-12-13 06:19:22,440 | INFO     | all data control threads have been joined
[2025-12-13 01:19:55] 2025-12-13 06:19:22,614 | INFO     | [job] retrieve thread has finished
[2025-12-13 01:19:55] 2025-12-13 06:19:22,614 | INFO     | [job] queue monitor thread has finished
[2025-12-13 01:19:55] 2025-12-13 06:19:22,756 | INFO     | all payload control threads have been joined
[2025-12-13 01:19:55] 2025-12-13 06:19:22,797 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 01:19:55] 2025-12-13 06:19:22,828 | INFO     | [job] job monitor thread has finished
[2025-12-13 01:19:55] 2025-12-13 06:19:22,850 | INFO     | [payload] validate_post thread has finished
[2025-12-13 01:19:55] 2025-12-13 06:19:23,201 | INFO     | [payload] failed_post thread has finished
[2025-12-13 01:19:55] 2025-12-13 06:19:23,265 | INFO     | all job control threads have been joined
[2025-12-13 01:19:55] 2025-12-13 06:19:23,339 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 01:19:55] 2025-12-13 06:19:23,445 | INFO     | [data] control thread has finished
[2025-12-13 01:19:55] 2025-12-13 06:19:23,725 | INFO     | [data] copytool_in thread has finished
[2025-12-13 01:19:55] 2025-12-13 06:19:23,731 | INFO     | [job] validate thread has finished
[2025-12-13 01:19:55] 2025-12-13 06:19:23,749 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 01:19:55] 2025-12-13 06:19:23,761 | INFO     | [payload] control thread has finished
[2025-12-13 01:19:55] 2025-12-13 06:19:24,033 | INFO     | [data] copytool_out thread has finished
[2025-12-13 01:19:55] 2025-12-13 06:19:24,045 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 01:19:55] 2025-12-13 06:19:24,270 | INFO     | [job] control thread has finished
[2025-12-13 01:19:55] 2025-12-13 06:19:24,914 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 01:19:55] 2025-12-13 06:19:28,920 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 01:19:55] 2025-12-13 06:19:48,327 | INFO     | [monitor] cgroup control has ended
[2025-12-13 01:19:55] 2025-12-13 06:19:49,978 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140445026588480)>', '<ExcThread(monitor, started 140444281333504)>']
[2025-12-13 01:19:55] 2025-12-13 06:19:51,514 | INFO     | PID=2489 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-13 01:19:55] 2025-12-13 06:19:51,514 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 01:19:55] 2025-12-13 06:19:51,515 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 01:19:55] 2025-12-13 06:19:51,515 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 01:19:55] 2025-12-13 06:19:51,515 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 01:19:55] 2025-12-13 06:19:51,515 | INFO     | [monitor] control thread has ended
[2025-12-13 01:19:55] 2025-12-13 06:19:55,000 | INFO     | all workflow threads have been joined
[2025-12-13 01:19:55] 2025-12-13 06:19:55,000 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 01:19:55] 2025-12-13 06:19:55,001 | INFO     | traces error code: 0
[2025-12-13 01:19:55] 2025-12-13 06:19:55,001 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 01:19:55] 2025-12-13 06:19:55,106 [wrapper] ==== pilot stdout END ====
[2025-12-13 01:19:55] 2025-12-13 06:19:55,111 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 01:19:55] 2025-12-13 06:19:55,116 [wrapper] pilotpid: 2489
[2025-12-13 01:19:55] 2025-12-13 06:19:55,120 [wrapper] Pilot exit status: 0
[2025-12-13 01:19:55] 2025-12-13 06:19:55,139 [wrapper] pandaids: 6928901916
[2025-12-13 01:19:55] 2025-12-13 06:19:55,187 [wrapper] cleanup supervisor_pilot  7572 2490
[2025-12-13 01:19:55] 2025-12-13 06:19:55,193 [wrapper] Test setup, not cleaning
[2025-12-13 01:19:55] 2025-12-13 06:19:55,198 [wrapper] apfmon messages muted
[2025-12-13 01:19:55] 2025-12-13 06:19:55,203 [wrapper] ==== wrapper stdout END ====
[2025-12-13 01:19:55] 2025-12-13 06:19:55,208 [wrapper] ==== wrapper stderr END ====
[2025-12-13 01:19:55]  *** Error codes and diagnostics ***
[2025-12-13 01:19:55]     "exeErrorCode": 0,
[2025-12-13 01:19:55]     "exeErrorDiag": "",
[2025-12-13 01:19:55]     "pilotErrorCode": 0,
[2025-12-13 01:19:55]     "pilotErrorDiag": "",
[2025-12-13 01:19:55]  *** Listing of results directory ***
[2025-12-13 01:19:55] total 342548
[2025-12-13 01:19:55] -rw-r--r-- 1 boincer umatlas    579449 Dec 12 22:44 pilot3.tar.gz
[2025-12-13 01:19:55] -rw-r--r-- 1 boincer umatlas      5112 Dec 12 22:52 queuedata.json
[2025-12-13 01:19:55] -rwx------ 1 boincer umatlas     36322 Dec 12 22:52 runpilot2-wrapper.sh
[2025-12-13 01:19:55] -rw-r--r-- 1 boincer umatlas       100 Dec 12 22:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 01:19:55] -rwxr-xr-x 1 boincer umatlas      7986 Dec 12 22:55 run_atlas
[2025-12-13 01:19:55] -rw-r--r-- 1 boincer umatlas       105 Dec 12 22:55 job.xml
[2025-12-13 01:19:55] -rw-r--r-- 2 boincer umatlas 193018793 Dec 12 22:55 EVNT.47886829._000073.pool.root.1
[2025-12-13 01:19:55] -rw-r--r-- 2 boincer umatlas     15847 Dec 12 22:55 start_atlas.sh
[2025-12-13 01:19:55] drwxrwx--x 2 boincer umatlas      4096 Dec 12 22:55 shared
[2025-12-13 01:19:55] -rw-r--r-- 2 boincer umatlas    592412 Dec 12 22:55 input.tar.gz
[2025-12-13 01:19:55] -rw-r--r-- 1 boincer umatlas         0 Dec 12 22:55 boinc_lockfile
[2025-12-13 01:19:55] -rw-r--r-- 1 boincer umatlas      2536 Dec 12 22:55 pandaJob.out
[2025-12-13 01:19:55] -rw------- 1 boincer umatlas        57 Dec 12 22:55 setup.sh.local
[2025-12-13 01:19:55] -rw------- 1 boincer umatlas    991720 Dec 12 22:55 agis_schedconf.cvmfs.json
[2025-12-13 01:19:55] -rw------- 1 boincer umatlas   1516240 Dec 12 22:55 agis_ddmendpoints.agis.ALL.json
[2025-12-13 01:19:55] drwx------ 5 boincer umatlas      4096 Dec 12 22:55 pilot3
[2025-12-13 01:19:55] -rw-r--r-- 1 boincer umatlas      5909 Dec 13 01:12 init_data.xml
[2025-12-13 01:19:55] -rw------- 1 boincer umatlas 150679582 Dec 13 01:18 HITS.47886831._001805.pool.root.1
[2025-12-13 01:19:55] -rw-r--r-- 1 boincer umatlas       529 Dec 13 01:18 boinc_task_state.xml
[2025-12-13 01:19:55] -rw------- 1 boincer umatlas      1049 Dec 13 01:19 memory_monitor_summary.json
[2025-12-13 01:19:55] -rw------- 1 boincer umatlas    372556 Dec 13 01:19 log.47886831._001805.job.log.tgz.1
[2025-12-13 01:19:55] -rw------- 1 boincer umatlas      7836 Dec 13 01:19 heartbeat.json
[2025-12-13 01:19:55] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 01:19 boinc_mmap_file
[2025-12-13 01:19:55] -rw-r--r-- 1 boincer umatlas        27 Dec 13 01:19 wrapper_checkpoint.txt
[2025-12-13 01:19:55] -rw------- 1 boincer umatlas        95 Dec 13 01:19 pilot_heartbeat.json
[2025-12-13 01:19:55] -rw------- 1 boincer umatlas      4931 Dec 13 01:19 pilotlog.txt
[2025-12-13 01:19:55] -rw------- 1 boincer umatlas   1201061 Dec 13 01:19 log.47886831._001805.job.log.1
[2025-12-13 01:19:55] -rw------- 1 boincer umatlas       357 Dec 13 01:19 output.list
[2025-12-13 01:19:55] -rw-r--r-- 1 boincer umatlas       620 Dec 13 01:19 runtime_log
[2025-12-13 01:19:55] -rw------- 1 boincer umatlas   1597440 Dec 13 01:19 result.tar.gz
[2025-12-13 01:19:55] -rw------- 1 boincer umatlas       659 Dec 13 01:19 telNDmKrVo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnURKDmJlbxOn.diag
[2025-12-13 01:19:55] -rw-r--r-- 1 boincer umatlas      9337 Dec 13 01:19 runtime_log.err
[2025-12-13 01:19:55] -rw-r--r-- 1 boincer umatlas     21267 Dec 13 01:19 stderr.txt
[2025-12-13 01:19:55] HITS file was successfully produced:
[2025-12-13 01:19:55] -rw------- 1 boincer umatlas 150679582 Dec 13 01:18 shared/HITS.pool.root.1
[2025-12-13 01:19:55]  *** Contents of shared directory: ***
[2025-12-13 01:19:55] total 337808
[2025-12-13 01:19:55] -rw-r--r-- 2 boincer umatlas 193018793 Dec 12 22:55 ATLAS.root_0
[2025-12-13 01:19:55] -rw-r--r-- 2 boincer umatlas     15847 Dec 12 22:55 start_atlas.sh
[2025-12-13 01:19:55] -rw-r--r-- 2 boincer umatlas    592412 Dec 12 22:55 input.tar.gz
[2025-12-13 01:19:55] -rw------- 1 boincer umatlas 150679582 Dec 13 01:18 HITS.pool.root.1
[2025-12-13 01:19:55] -rw------- 1 boincer umatlas   1597440 Dec 13 01:19 result.tar.gz
01:19:57 (31135): run_atlas exited; CPU time 63389.835663
01:19:57 (31135): called boinc_finish(0)

</stderr_txt>
]]>

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