Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:50 (980261): wrapper (7.7.26015): starting
00:02:50 (980261): wrapper: running run_atlas (--nthreads 9)
[2025-12-13 00:02:50] Arguments: --nthreads 9
[2025-12-13 00:02:50] Threads: 9
[2025-12-13 00:02:50] Checking for CVMFS
[2025-12-13 00:02:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 00:02:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 00:02:51] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 00:02:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 00:02:52] 2.13.3.0 10121 54037 445516 153948 3 352 28121530 32935936 45723 16776704 0 549087914 99.762 329232796 27328 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-13 00:02:52] CVMFS is ok
[2025-12-13 00:02:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 00:02:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 00:02:52] Further information can be found at the LHC@home message board.
[2025-12-13 00:02:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 00:02:52] Checking for apptainer binary...
[2025-12-13 00:02:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 00:02:52] Running /usr/bin/apptainer --version
[2025-12-13 00:02:52] apptainer version 1.4.4-1.el9
[2025-12-13 00:02:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 00:02:53] lc-10-11.aglt2.org
[2025-12-13 00:02:53] apptainer works
[2025-12-13 00:02:53] Set ATHENA_PROC_NUMBER=9
[2025-12-13 00:02:53] Set ATHENA_CORE_NUMBER=9
[2025-12-13 00:02:53] Starting ATLAS job with PandaID=6926908553
[2025-12-13 00:02:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 16:00:14]  *** The last 200 lines of the pilot log: ***
[2025-12-13 16:00:14] 2025-12-13 20:58:46,006 | INFO     | time since job start (57267s) is within the limit (174528.0s)
[2025-12-13 16:00:14] 2025-12-13 20:58:48,064 | INFO     | time since job start (57269s) is within the limit (174528.0s)
[2025-12-13 16:00:14] 2025-12-13 20:58:48,444 | INFO     | monitor loop #2862: job 0:6926908553 is in state 'finished'
[2025-12-13 16:00:14] 2025-12-13 20:58:48,445 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 16:00:14] 2025-12-13 20:58:50,084 | INFO     | time since job start (57271s) is within the limit (174528.0s)
[2025-12-13 16:00:14] 2025-12-13 20:58:50,949 | INFO     | monitor loop #2863: job 0:6926908553 is in state 'finished'
[2025-12-13 16:00:14] 2025-12-13 20:58:50,950 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 16:00:14] 2025-12-13 20:58:52,091 | INFO     | time since job start (57273s) is within the limit (174528.0s)
[2025-12-13 16:00:14] 2025-12-13 20:58:53,457 | INFO     | monitor loop #2864: job 0:6926908553 is in state 'finished'
[2025-12-13 16:00:14] 2025-12-13 20:58:53,463 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 16:00:14] 2025-12-13 20:58:54,098 | INFO     | time since job start (57275s) is within the limit (174528.0s)
[2025-12-13 16:00:14] 2025-12-13 20:58:55,986 | INFO     | monitor loop #2865: job 0:6926908553 is in state 'finished'
[2025-12-13 16:00:14] 2025-12-13 20:58:55,987 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 16:00:14] 2025-12-13 20:58:56,105 | INFO     | time since job start (57277s) is within the limit (174528.0s)
[2025-12-13 16:00:14] 2025-12-13 20:58:58,112 | INFO     | time since job start (57279s) is within the limit (174528.0s)
[2025-12-13 16:00:14] 2025-12-13 20:58:58,508 | INFO     | monitor loop #2866: job 0:6926908553 is in state 'finished'
[2025-12-13 16:00:14] 2025-12-13 20:58:58,511 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 16:00:14] 2025-12-13 20:58:59,918 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-13 16:00:14] 2025-12-13 20:58:59,948 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2690.494874999999
[2025-12-13 16:00:14] 2025-12-13 20:59:00,029 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6926908553/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 16:00:14] 2025-12-13 20:59:00,042 | INFO     | extracted standard info from prmon json
[2025-12-13 16:00:14] 2025-12-13 20:59:00,042 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 16:00:14] 2025-12-13 20:59:00,042 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 16:00:14] 2025-12-13 20:59:00,105 | INFO     | fitting pss+swap vs Time
[2025-12-13 16:00:14] 2025-12-13 20:59:00,106 | INFO     | sum of square deviations: 252660859768.10846
[2025-12-13 16:00:14] 2025-12-13 20:59:00,130 | INFO     | time since job start (57281s) is within the limit (174528.0s)
[2025-12-13 16:00:14] 2025-12-13 20:59:00,191 | INFO     | sum of deviations: 2263139706063.376
[2025-12-13 16:00:14] 2025-12-13 20:59:00,191 | INFO     | mean x: 1765630983.6648822
[2025-12-13 16:00:14] 2025-12-13 20:59:00,191 | INFO     | mean y: 3467914.2248394005
[2025-12-13 16:00:14] 2025-12-13 20:59:00,191 | INFO     | intersect: -15811682833.916882
[2025-12-13 16:00:14] 2025-12-13 20:59:00,192 | INFO     | chi2: 27.772770303909923
[2025-12-13 16:00:14] 2025-12-13 20:59:00,194 | INFO     | sum of square deviations: 248625842489.61783
[2025-12-13 16:00:14] 2025-12-13 20:59:00,304 | INFO     | sum of deviations: 2645574349652.4326
[2025-12-13 16:00:14] 2025-12-13 20:59:00,305 | INFO     | mean x: 1765630831.1808395
[2025-12-13 16:00:14] 2025-12-13 20:59:00,305 | INFO     | mean y: 3482363.6759956945
[2025-12-13 16:00:14] 2025-12-13 20:59:00,305 | INFO     | intersect: -18784217221.987915
[2025-12-13 16:00:14] 2025-12-13 20:59:00,306 | INFO     | chi2: 24.451811625812525
[2025-12-13 16:00:14] 2025-12-13 20:59:00,306 | INFO     | current chi2=24.451811625812525 (change=11.957606827684254 %)
[2025-12-13 16:00:14] 2025-12-13 20:59:00,306 | INFO     | right removable region: 928
[2025-12-13 16:00:14] 2025-12-13 20:59:00,307 | INFO     | sum of square deviations: 248624096420.25607
[2025-12-13 16:00:14] 2025-12-13 20:59:00,489 | INFO     | sum of deviations: 1786095710060.6843
[2025-12-13 16:00:14] 2025-12-13 20:59:00,489 | INFO     | mean x: 1765631136.181916
[2025-12-13 16:00:14] 2025-12-13 20:59:00,489 | INFO     | mean y: 3485936.4456404736
[2025-12-13 16:00:14] 2025-12-13 20:59:00,490 | INFO     | intersect: -12680667543.80874
[2025-12-13 16:00:14] 2025-12-13 20:59:00,491 | INFO     | chi2: 22.90986005423669
[2025-12-13 16:00:14] 2025-12-13 20:59:00,491 | INFO     | current chi2=22.90986005423669 (change=17.50963334395423 %)
[2025-12-13 16:00:14] 2025-12-13 20:59:00,491 | INFO     | left removable region: 10
[2025-12-13 16:00:14] 2025-12-13 20:59:00,513 | INFO     | sum of square deviations: 239897096451.49023
[2025-12-13 16:00:14] 2025-12-13 20:59:00,642 | INFO     | sum of deviations: 1814818712748.9165
[2025-12-13 16:00:14] 2025-12-13 20:59:00,643 | INFO     | mean x: 1765631105.7189543
[2025-12-13 16:00:14] 2025-12-13 20:59:00,644 | INFO     | mean y: 3519893.2864923747
[2025-12-13 16:00:14] 2025-12-13 20:59:00,645 | INFO     | intersect: -13353458652.380325
[2025-12-13 16:00:14] 2025-12-13 20:59:00,646 | INFO     | chi2: 15.127241876893251
[2025-12-13 16:00:14] 2025-12-13 20:59:00,646 | INFO     | current memory leak: 7.56 B/s (using 918 data points, chi2=15.13)
[2025-12-13 16:00:14] 2025-12-13 20:59:00,647 | INFO     | could have reported an average CPU frequency of 2659 MHz (35 samples)
[2025-12-13 16:00:14] 2025-12-13 20:59:00,647 | INFO     | ..............................
[2025-12-13 16:00:14] 2025-12-13 20:59:00,647 | INFO     | . Timing measurements:
[2025-12-13 16:00:14] 2025-12-13 20:59:00,647 | INFO     | . get job = 0 s
[2025-12-13 16:00:14] 2025-12-13 20:59:00,647 | INFO     | . initial setup = 8 s
[2025-12-13 16:00:14] 2025-12-13 20:59:00,648 | INFO     | . payload setup = 140 s
[2025-12-13 16:00:14] 2025-12-13 20:59:00,648 | INFO     | . stage-in = 0 s
[2025-12-13 16:00:14] 2025-12-13 20:59:00,648 | INFO     | . payload execution = 56994 s
[2025-12-13 16:00:14] 2025-12-13 20:59:00,648 | INFO     | . stage-out = 14 s
[2025-12-13 16:00:14] 2025-12-13 20:59:00,648 | INFO     | . log creation = 4 s
[2025-12-13 16:00:14] 2025-12-13 20:59:00,648 | INFO     | ..............................
[2025-12-13 16:00:14] 2025-12-13 20:59:01,831 | INFO     | 
[2025-12-13 16:00:14] 2025-12-13 20:59:01,832 | INFO     | job summary report
[2025-12-13 16:00:14] 2025-12-13 20:59:01,832 | INFO     | --------------------------------------------------
[2025-12-13 16:00:14] 2025-12-13 20:59:01,832 | INFO     | PanDA job id: 6926908553
[2025-12-13 16:00:14] 2025-12-13 20:59:01,832 | INFO     | task id: 47866654
[2025-12-13 16:00:14] 2025-12-13 20:59:01,832 | INFO     | errors: (none)
[2025-12-13 16:00:14] 2025-12-13 20:59:01,832 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 16:00:14] 2025-12-13 20:59:01,832 | INFO     | pilot state: finished 
[2025-12-13 16:00:14] 2025-12-13 20:59:01,832 | INFO     | transexitcode: 0
[2025-12-13 16:00:14] 2025-12-13 20:59:01,832 | INFO     | exeerrorcode: 0
[2025-12-13 16:00:14] 2025-12-13 20:59:01,832 | INFO     | exeerrordiag: 
[2025-12-13 16:00:14] 2025-12-13 20:59:01,832 | INFO     | exitcode: 0
[2025-12-13 16:00:14] 2025-12-13 20:59:01,832 | INFO     | exitmsg: OK
[2025-12-13 16:00:14] 2025-12-13 20:59:01,832 | INFO     | cpuconsumptiontime: 172027 s
[2025-12-13 16:00:14] 2025-12-13 20:59:01,832 | INFO     | nevents: 1000
[2025-12-13 16:00:14] 2025-12-13 20:59:01,833 | INFO     | neventsw: 0
[2025-12-13 16:00:14] 2025-12-13 20:59:01,833 | INFO     | pid: 1099634
[2025-12-13 16:00:14] 2025-12-13 20:59:01,833 | INFO     | pgrp: 1099634
[2025-12-13 16:00:14] 2025-12-13 20:59:01,833 | INFO     | corecount: 9
[2025-12-13 16:00:14] 2025-12-13 20:59:01,833 | INFO     | event service: False
[2025-12-13 16:00:14] 2025-12-13 20:59:01,833 | INFO     | sizes: {0: 2284297, 1: 2284353, 2: 2284580, 3: 2284580, 14: 2284608, 25: 2284636, 36: 2284792, 37: 2285082, 47: 2285110, 57140: 2354551, 57141: 2354550, 57157: 236
[2025-12-13 16:00:14] 2025-12-13 20:59:01,833 | INFO     | --------------------------------------------------
[2025-12-13 16:00:14] 2025-12-13 20:59:01,833 | INFO     | 
[2025-12-13 16:00:14] 2025-12-13 20:59:01,833 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-12-13 16:00:14] 2025-12-13 20:59:01,983 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 16:00:14] 2025-12-13 20:59:01,983 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 16:00:14] 2025-12-13 20:59:01,983 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 16:00:14] 2025-12-13 20:59:01,983 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 16:00:14] 2025-12-13 20:59:01,983 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 16:00:14] 2025-12-13 20:59:01,983 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 16:00:14] 2025-12-13 20:59:01,983 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 16:00:14] 2025-12-13 20:59:01,983 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 16:00:14] 2025-12-13 20:59:01,983 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 16:00:14] 2025-12-13 20:59:01,984 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 16:00:14] 2025-12-13 20:59:01,984 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 16:00:14] 2025-12-13 20:59:01,984 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 16:00:14] 2025-12-13 20:59:01,984 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 16:00:14] 2025-12-13 20:59:01,984 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 16:00:14] 2025-12-13 20:59:01,984 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 16:00:14] 2025-12-13 20:59:01,984 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 16:00:14] 2025-12-13 20:59:01,984 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 16:00:14] 2025-12-13 20:59:01,984 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 16:00:14] 2025-12-13 20:59:01,984 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 16:00:14] 2025-12-13 20:59:01,984 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 16:00:14] 2025-12-13 20:59:01,984 | INFO     | job 6926908553 has completed (purged errors)
[2025-12-13 16:00:14] 2025-12-13 20:59:01,985 | INFO     | overall cleanup function is called
[2025-12-13 16:00:14] 2025-12-13 20:59:03,046 | INFO     | --- collectZombieJob: --- 10, [1099634]
[2025-12-13 16:00:14] 2025-12-13 20:59:03,046 | INFO     | zombie collector waiting for pid 1099634
[2025-12-13 16:00:14] 2025-12-13 20:59:03,047 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 16:00:14] 2025-12-13 20:59:03,047 | INFO     | collected zombie processes
[2025-12-13 16:00:14] 2025-12-13 20:59:03,047 | INFO     | will attempt to kill all subprocesses of pid=1099634
[2025-12-13 16:00:14] 2025-12-13 20:59:05,943 | INFO     | process IDs to be killed: [1099634] (in reverse order)
[2025-12-13 16:00:14] 2025-12-13 20:59:06,509 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 16:00:14] 2025-12-13 20:59:06,510 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 16:00:14] 2025-12-13 20:59:06,554 | INFO     | did not find any defunct processes belonging to 1099634
[2025-12-13 16:00:14] 2025-12-13 20:59:06,599 | INFO     | did not find any defunct processes belonging to 1099634
[2025-12-13 16:00:14] 2025-12-13 20:59:06,600 | INFO     | ready for new job
[2025-12-13 16:00:14] 2025-12-13 20:59:06,600 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 16:00:14] 2025-12-13 20:59:06,608 | INFO     | ***************************************
[2025-12-13 16:00:14] 2025-12-13 20:59:06,608 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 16:00:14] 2025-12-13 20:59:06,608 | INFO     | ***************************************
[2025-12-13 16:00:14] 2025-12-13 20:59:06,609 | INFO     | 
[2025-12-13 16:00:14] 2025-12-13 20:59:06,618 | INFO     | architecture information:
[2025-12-13 16:00:14] 2025-12-13 20:59:06,623 | INFO     | executing command: cat /etc/os-release
[2025-12-13 16:00:14] 2025-12-13 20:59:06,715 | INFO     | cat /etc/os-release:
[2025-12-13 16:00:14] NAME="CentOS Linux"
[2025-12-13 16:00:14] VERSION="7 (Core)"
[2025-12-13 16:00:14] ID="centos"
[2025-12-13 16:00:14] ID_LIKE="rhel fedora"
[2025-12-13 16:00:14] VERSION_ID="7"
[2025-12-13 16:00:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 16:00:14] ANSI_COLOR="0;31"
[2025-12-13 16:00:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 16:00:14] HOME_URL="https://www.centos.org/"
[2025-12-13 16:00:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 16:00:14] 
[2025-12-13 16:00:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 16:00:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 16:00:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 16:00:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 16:00:14] 
[2025-12-13 16:00:14] 2025-12-13 20:59:06,715 | INFO     | ***************************************
[2025-12-13 16:00:14] 2025-12-13 20:59:07,224 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-12-13 16:00:14] 2025-12-13 20:59:07,388 | INFO     | sufficient remaining disk space (93466918912 B)
[2025-12-13 16:00:14] 2025-12-13 20:59:07,388 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 16:00:14] 2025-12-13 20:59:07,388 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 16:00:14] 2025-12-13 20:59:07,388 | INFO     | update_server=False
[2025-12-13 16:00:14] 2025-12-13 20:59:07,388 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 16:00:14] 2025-12-13 20:59:07,389 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 16:00:14] 2025-12-13 20:59:07,389 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 16:00:14] 2025-12-13 20:59:07,389 | INFO     | aborting loop
[2025-12-13 16:00:14] 2025-12-13 20:59:07,517 | INFO     | all data control threads have been joined
[2025-12-13 16:00:14] 2025-12-13 20:59:08,174 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 16:00:14] 2025-12-13 20:59:08,368 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 16:00:14] 2025-12-13 20:59:08,394 | INFO     | [job] retrieve thread has finished
[2025-12-13 16:00:14] 2025-12-13 20:59:08,394 | INFO     | [data] copytool_in thread has finished
[2025-12-13 16:00:14] 2025-12-13 20:59:08,398 | INFO     | [job] queue monitor thread has finished
[2025-12-13 16:00:14] 2025-12-13 20:59:08,398 | INFO     | [job] job monitor thread has finished
[2025-12-13 16:00:14] 2025-12-13 20:59:08,450 | INFO     | all payload control threads have been joined
[2025-12-13 16:00:14] 2025-12-13 20:59:08,463 | INFO     | [job] validate thread has finished
[2025-12-13 16:00:14] 2025-12-13 20:59:08,531 | INFO     | [data] control thread has finished
[2025-12-13 16:00:14] 2025-12-13 20:59:08,698 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 16:00:14] 2025-12-13 20:59:08,699 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 16:00:14] 2025-12-13 20:59:08,881 | INFO     | [payload] failed_post thread has finished
[2025-12-13 16:00:14] 2025-12-13 20:59:09,109 | INFO     | all job control threads have been joined
[2025-12-13 16:00:14] 2025-12-13 20:59:09,456 | INFO     | [payload] control thread has finished
[2025-12-13 16:00:14] 2025-12-13 20:59:09,574 | INFO     | [payload] validate_post thread has finished
[2025-12-13 16:00:14] 2025-12-13 20:59:09,709 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 16:00:14] 2025-12-13 20:59:09,710 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 16:00:14] 2025-12-13 20:59:10,116 | INFO     | [job] control thread has finished
[2025-12-13 16:00:14] 2025-12-13 20:59:10,380 | INFO     | [data] copytool_out thread has finished
[2025-12-13 16:00:14] 2025-12-13 20:59:12,190 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 16:00:14] 2025-12-13 20:59:36,047 | INFO     | PID=1005975 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-13 16:00:14] 2025-12-13 20:59:36,048 | INFO     | .. there are 78 such processes running
[2025-12-13 16:00:14] 2025-12-13 20:59:36,048 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 16:00:14] 2025-12-13 20:59:36,049 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 16:00:14] 2025-12-13 20:59:36,049 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 16:00:14] 2025-12-13 21:00:05,277 | INFO     | [monitor] cgroup control has ended
[2025-12-13 16:00:14] 2025-12-13 21:00:06,999 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140059689408320)>', '<ExcThread(monitor, started 140059185493760)>']
[2025-12-13 16:00:14] 2025-12-13 21:00:07,293 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 16:00:14] 2025-12-13 21:00:07,294 | INFO     | [monitor] control thread has ended
[2025-12-13 16:00:14] 2025-12-13 21:00:12,025 | INFO     | all workflow threads have been joined
[2025-12-13 16:00:14] 2025-12-13 21:00:12,026 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 16:00:14] 2025-12-13 21:00:12,026 | INFO     | traces error code: 0
[2025-12-13 16:00:14] 2025-12-13 21:00:12,026 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 16:00:14] 2025-12-13 21:00:13,369 [wrapper] ==== pilot stdout END ====
[2025-12-13 16:00:14] 2025-12-13 21:00:13,420 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 16:00:14] 2025-12-13 21:00:13,467 [wrapper] pilotpid: 1005975
[2025-12-13 16:00:14] 2025-12-13 21:00:13,499 [wrapper] Pilot exit status: 0
[2025-12-13 16:00:14] 2025-12-13 21:00:13,606 [wrapper] pandaids: 6926908553
[2025-12-13 16:00:14] 2025-12-13 21:00:13,803 [wrapper] cleanup supervisor_pilot 3988220 1005976
[2025-12-13 16:00:14] 2025-12-13 21:00:13,827 [wrapper] Test setup, not cleaning
[2025-12-13 16:00:14] 2025-12-13 21:00:13,845 [wrapper] apfmon messages muted
[2025-12-13 16:00:14] 2025-12-13 21:00:13,870 [wrapper] ==== wrapper stdout END ====
[2025-12-13 16:00:14] 2025-12-13 21:00:13,910 [wrapper] ==== wrapper stderr END ====
[2025-12-13 16:00:14]  *** Error codes and diagnostics ***
[2025-12-13 16:00:14]     "exeErrorCode": 0,
[2025-12-13 16:00:14]     "exeErrorDiag": "",
[2025-12-13 16:00:14]     "pilotErrorCode": 0,
[2025-12-13 16:00:14]     "pilotErrorDiag": "",
[2025-12-13 16:00:14]  *** Listing of results directory ***
[2025-12-13 16:00:14] total 930312
[2025-12-13 16:00:14] -rw-r--r--. 1 boincer umatlas    579449 Dec 11 09:24 pilot3.tar.gz
[2025-12-13 16:00:14] -rwx------. 1 boincer umatlas     36292 Dec 11 09:27 runpilot2-wrapper.sh
[2025-12-13 16:00:14] -rw-r--r--. 1 boincer umatlas      5112 Dec 11 09:27 queuedata.json
[2025-12-13 16:00:14] -rw-r--r--. 1 boincer umatlas       100 Dec 13 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 16:00:14] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 13 00:02 run_atlas
[2025-12-13 16:00:14] -rw-r--r--. 1 boincer umatlas       105 Dec 13 00:02 job.xml
[2025-12-13 16:00:14] -rw-r--r--. 2 boincer umatlas 325129435 Dec 13 00:02 EVNT.47866652._000012.pool.root.1
[2025-12-13 16:00:14] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 00:02 start_atlas.sh
[2025-12-13 16:00:14] drwxrwx--x. 2 boincer umatlas      4096 Dec 13 00:02 shared
[2025-12-13 16:00:14] -rw-r--r--. 2 boincer umatlas    592577 Dec 13 00:02 input.tar.gz
[2025-12-13 16:00:14] -rw-r--r--. 1 boincer umatlas         0 Dec 13 00:02 boinc_lockfile
[2025-12-13 16:00:14] -rw-r--r--. 1 boincer umatlas      2822 Dec 13 00:02 pandaJob.out
[2025-12-13 16:00:14] -rw-------. 1 boincer umatlas        57 Dec 13 00:02 setup.sh.local
[2025-12-13 16:00:14] -rw-------. 1 boincer umatlas    991736 Dec 13 00:04 agis_schedconf.cvmfs.json
[2025-12-13 16:00:14] drwx------. 5 boincer umatlas      4096 Dec 13 00:04 pilot3
[2025-12-13 16:00:14] -rw-r--r--. 1 boincer umatlas       533 Dec 13 15:30 boinc_task_state.xml
[2025-12-13 16:00:14] -rw-r--r--. 1 boincer umatlas      6887 Dec 13 15:56 init_data.xml
[2025-12-13 16:00:14] -rw-------. 1 boincer umatlas 606192076 Dec 13 15:56 HITS.47866654._000120.pool.root.1
[2025-12-13 16:00:14] -rw-------. 1 boincer umatlas      1057 Dec 13 15:57 memory_monitor_summary.json
[2025-12-13 16:00:14] -rw-------. 1 boincer umatlas   1516240 Dec 13 15:58 agis_ddmendpoints.agis.ALL.json
[2025-12-13 16:00:14] -rw-------. 1 boincer umatlas   2234364 Dec 13 15:58 log.47866654._000120.job.log.tgz.1
[2025-12-13 16:00:14] -rw-------. 1 boincer umatlas     28293 Dec 13 15:59 heartbeat.json
[2025-12-13 16:00:14] -rw-------. 1 boincer umatlas        95 Dec 13 15:59 pilot_heartbeat.json
[2025-12-13 16:00:14] -rw-r--r--. 1 boincer umatlas        29 Dec 13 16:00 wrapper_checkpoint.txt
[2025-12-13 16:00:14] -rw-------. 1 boincer umatlas      4824 Dec 13 16:00 pilotlog.txt
[2025-12-13 16:00:14] -rw-------. 1 boincer umatlas   6445268 Dec 13 16:00 log.47866654._000120.job.log.1
[2025-12-13 16:00:14] -rw-------. 1 boincer umatlas       353 Dec 13 16:00 output.list
[2025-12-13 16:00:14] -rw-r--r--. 1 boincer umatlas       620 Dec 13 16:00 runtime_log
[2025-12-13 16:00:14] -rw-------. 1 boincer umatlas   8714240 Dec 13 16:00 result.tar.gz
[2025-12-13 16:00:14] -rw-r--r--. 1 boincer umatlas      9343 Dec 13 16:00 runtime_log.err
[2025-12-13 16:00:14] -rw-------. 1 boincer umatlas       660 Dec 13 16:00 5fbNDmqown8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrJNKDmzQGlBn.diag
[2025-12-13 16:00:14] -rw-r--r--. 1 boincer umatlas     21723 Dec 13 16:00 stderr.txt
[2025-12-13 16:00:14] -rw-r--r--. 1 boincer umatlas      8192 Dec 13 16:00 boinc_mmap_file
[2025-12-13 16:00:14] HITS file was successfully produced:
[2025-12-13 16:00:15] -rw-------. 1 boincer umatlas 606192076 Dec 13 15:56 shared/HITS.pool.root.1
[2025-12-13 16:00:15]  *** Contents of shared directory: ***
[2025-12-13 16:00:15] total 918612
[2025-12-13 16:00:15] -rw-r--r--. 2 boincer umatlas 325129435 Dec 13 00:02 ATLAS.root_0
[2025-12-13 16:00:15] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 00:02 start_atlas.sh
[2025-12-13 16:00:15] -rw-r--r--. 2 boincer umatlas    592577 Dec 13 00:02 input.tar.gz
[2025-12-13 16:00:15] -rw-------. 1 boincer umatlas 606192076 Dec 13 15:56 HITS.pool.root.1
[2025-12-13 16:00:15] -rw-------. 1 boincer umatlas   8714240 Dec 13 16:00 result.tar.gz
16:00:37 (980261): run_atlas exited; CPU time 174619.098601
16:00:37 (980261): called boinc_finish(0)

</stderr_txt>
]]>

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