Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:28:34 (1391127): wrapper (7.7.26015): starting
23:28:34 (1391127): wrapper: running run_atlas (--nthreads 9)
[2025-12-12 23:28:34] Arguments: --nthreads 9
[2025-12-12 23:28:34] Threads: 9
[2025-12-12 23:28:34] Checking for CVMFS
[2025-12-12 23:28:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-12 23:28:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-12 23:28:36] Running cvmfs_config stat atlas.cern.ch
[2025-12-12 23:28:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-12 23:28:37] 2.13.2.0 6538 58400 268840 153948 3 108 34466267 40960000 12498 16776704 0 73547150 99.768 47527556 36717 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-12 23:28:37] CVMFS is ok
[2025-12-12 23:28:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-12 23:28:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-12 23:28:37] Further information can be found at the LHC@home message board.
[2025-12-12 23:28:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-12 23:28:37] Checking for apptainer binary...
[2025-12-12 23:28:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-12 23:28:37] Running /usr/bin/apptainer --version
[2025-12-12 23:28:38] apptainer version 1.4.4-1.el9
[2025-12-12 23:28:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-12 23:28:58] c-210-31-3.aglt2.org
[2025-12-12 23:28:58] apptainer works
[2025-12-12 23:28:58] Set ATHENA_PROC_NUMBER=9
[2025-12-12 23:28:58] Set ATHENA_CORE_NUMBER=9
[2025-12-12 23:28:58] Starting ATLAS job with PandaID=6928824046
[2025-12-12 23:28:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 13:52:22]  *** The last 200 lines of the pilot log: ***
[2025-12-13 13:52:22] 2025-12-13 18:51:08,644 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-13 13:52:22] 2025-12-13 18:51:08,691 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2843.5524642857154
[2025-12-13 13:52:22] 2025-12-13 18:51:08,703 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6928824046/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 13:52:22] 2025-12-13 18:51:08,703 | INFO     | extracted standard info from prmon json
[2025-12-13 13:52:22] 2025-12-13 18:51:08,704 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 13:52:22] 2025-12-13 18:51:08,704 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 13:52:22] 2025-12-13 18:51:08,704 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 13:52:22] 2025-12-13 18:51:08,704 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 13:52:22] 2025-12-13 18:51:08,720 | INFO     | fitting pss+swap vs Time
[2025-12-13 13:52:22] 2025-12-13 18:51:08,722 | INFO     | sum of square deviations: 187085031130.14908
[2025-12-13 13:52:22] 2025-12-13 18:51:08,740 | INFO     | sum of deviations: -200146925102.30478
[2025-12-13 13:52:22] 2025-12-13 18:51:08,740 | INFO     | mean x: 1765626060.7360947
[2025-12-13 13:52:22] 2025-12-13 18:51:08,741 | INFO     | mean y: 2554976.0165680475
[2025-12-13 13:52:22] 2025-12-13 18:51:08,741 | INFO     | intersect: 1891453434.659078
[2025-12-13 13:52:22] 2025-12-13 18:51:08,746 | INFO     | chi2: 3.63749794946972
[2025-12-13 13:52:22] 2025-12-13 18:51:08,748 | INFO     | sum of square deviations: 183783726377.42358
[2025-12-13 13:52:22] 2025-12-13 18:51:08,783 | INFO     | sum of deviations: -83505065256.9453
[2025-12-13 13:52:22] 2025-12-13 18:51:08,783 | INFO     | mean x: 1765625908.2404761
[2025-12-13 13:52:22] 2025-12-13 18:51:08,784 | INFO     | mean y: 2560345.163095238
[2025-12-13 13:52:22] 2025-12-13 18:51:08,784 | INFO     | intersect: 804800617.4284964
[2025-12-13 13:52:22] 2025-12-13 18:51:08,785 | INFO     | chi2: 2.0602104165878847
[2025-12-13 13:52:22] 2025-12-13 18:51:08,789 | INFO     | current chi2=2.0602104165878847 (change=43.3618810180161 %)
[2025-12-13 13:52:22] 2025-12-13 18:51:08,791 | INFO     | sum of square deviations: 180521492124.66534
[2025-12-13 13:52:22] 2025-12-13 18:51:08,824 | INFO     | sum of deviations: -83985559053.26219
[2025-12-13 13:52:22] 2025-12-13 18:51:08,830 | INFO     | mean x: 1765625755.7449102
[2025-12-13 13:52:22] 2025-12-13 18:51:08,830 | INFO     | mean y: 2560322.702994012
[2025-12-13 13:52:22] 2025-12-13 18:51:08,830 | INFO     | intersect: 823997506.8842
[2025-12-13 13:52:22] 2025-12-13 18:51:08,831 | INFO     | chi2: 2.0597449290766585
[2025-12-13 13:52:22] 2025-12-13 18:51:08,832 | INFO     | current chi2=2.0597449290766585 (change=0.022594173268823382 %)
[2025-12-13 13:52:22] 2025-12-13 18:51:08,832 | INFO     | right removable region: 834
[2025-12-13 13:52:22] 2025-12-13 18:51:08,833 | INFO     | sum of square deviations: 183783346957.4235
[2025-12-13 13:52:22] 2025-12-13 18:51:08,872 | INFO     | sum of deviations: -314392941343.9685
[2025-12-13 13:52:22] 2025-12-13 18:51:08,872 | INFO     | mean x: 1765626213.2404761
[2025-12-13 13:52:22] 2025-12-13 18:51:08,873 | INFO     | mean y: 2560235.2226190474
[2025-12-13 13:52:22] 2025-12-13 18:51:08,873 | INFO     | intersect: 3022966750.2007394
[2025-12-13 13:52:22] 2025-12-13 18:51:08,878 | INFO     | chi2: 2.3178560803414126
[2025-12-13 13:52:22] 2025-12-13 18:51:08,879 | INFO     | current chi2=2.3178560803414126 (change=36.27883472266113 %)
[2025-12-13 13:52:22] 2025-12-13 18:51:08,880 | INFO     | sum of square deviations: 180520835765.64053
[2025-12-13 13:52:22] 2025-12-13 18:51:08,915 | INFO     | monitor loop #2800: job 0:6928824046 is in state 'finished'
[2025-12-13 13:52:22] 2025-12-13 18:51:08,916 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 13:52:22] 2025-12-13 18:51:08,921 | INFO     | sum of deviations: -269279400293.3831
[2025-12-13 13:52:22] 2025-12-13 18:51:08,922 | INFO     | mean x: 1765626365.742515
[2025-12-13 13:52:22] 2025-12-13 18:51:08,922 | INFO     | mean y: 2558125.6586826346
[2025-12-13 13:52:22] 2025-12-13 18:51:08,922 | INFO     | intersect: 2636308445.3534923
[2025-12-13 13:52:22] 2025-12-13 18:51:08,923 | INFO     | chi2: 2.242863608815646
[2025-12-13 13:52:22] 2025-12-13 18:51:08,924 | INFO     | current chi2=2.242863608815646 (change=3.2354239834735656 %)
[2025-12-13 13:52:22] 2025-12-13 18:51:08,924 | INFO     | left removable region: 20
[2025-12-13 13:52:22] 2025-12-13 18:51:08,933 | INFO     | sum of square deviations: 167240495593.3725
[2025-12-13 13:52:22] 2025-12-13 18:51:08,979 | INFO     | sum of deviations: -54095536288.82188
[2025-12-13 13:52:22] 2025-12-13 18:51:08,980 | INFO     | mean x: 1765626335.2518427
[2025-12-13 13:52:22] 2025-12-13 18:51:08,980 | INFO     | mean y: 2558706.047911548
[2025-12-13 13:52:22] 2025-12-13 18:51:08,980 | INFO     | intersect: 573667414.8103164
[2025-12-13 13:52:22] 2025-12-13 18:51:08,991 | INFO     | chi2: 0.43951890766612894
[2025-12-13 13:52:22] 2025-12-13 18:51:08,992 | INFO     | current memory leak: -0.32 B/s (using 814 data points, chi2=0.44)
[2025-12-13 13:52:22] 2025-12-13 18:51:08,993 | INFO     | could have reported an average CPU frequency of 2697 MHz (31 samples)
[2025-12-13 13:52:22] 2025-12-13 18:51:08,993 | INFO     | ..............................
[2025-12-13 13:52:22] 2025-12-13 18:51:08,993 | INFO     | . Timing measurements:
[2025-12-13 13:52:22] 2025-12-13 18:51:08,993 | INFO     | . get job = 0 s
[2025-12-13 13:52:22] 2025-12-13 18:51:08,994 | INFO     | . initial setup = 4 s
[2025-12-13 13:52:22] 2025-12-13 18:51:08,994 | INFO     | . payload setup = 19 s
[2025-12-13 13:52:22] 2025-12-13 18:51:08,994 | INFO     | . stage-in = 0 s
[2025-12-13 13:52:22] 2025-12-13 18:51:08,994 | INFO     | . payload execution = 51540 s
[2025-12-13 13:52:22] 2025-12-13 18:51:08,994 | INFO     | . stage-out = 6 s
[2025-12-13 13:52:22] 2025-12-13 18:51:08,994 | INFO     | . log creation = 2 s
[2025-12-13 13:52:22] 2025-12-13 18:51:08,994 | INFO     | ..............................
[2025-12-13 13:52:22] 2025-12-13 18:51:09,330 | INFO     | 
[2025-12-13 13:52:22] 2025-12-13 18:51:09,330 | INFO     | job summary report
[2025-12-13 13:52:22] 2025-12-13 18:51:09,330 | INFO     | --------------------------------------------------
[2025-12-13 13:52:22] 2025-12-13 18:51:09,330 | INFO     | PanDA job id: 6928824046
[2025-12-13 13:52:22] 2025-12-13 18:51:09,331 | INFO     | task id: 47886831
[2025-12-13 13:52:22] 2025-12-13 18:51:09,331 | INFO     | errors: (none)
[2025-12-13 13:52:22] 2025-12-13 18:51:09,331 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 13:52:22] 2025-12-13 18:51:09,331 | INFO     | pilot state: finished 
[2025-12-13 13:52:22] 2025-12-13 18:51:09,331 | INFO     | transexitcode: 0
[2025-12-13 13:52:22] 2025-12-13 18:51:09,331 | INFO     | exeerrorcode: 0
[2025-12-13 13:52:22] 2025-12-13 18:51:09,331 | INFO     | exeerrordiag: 
[2025-12-13 13:52:22] 2025-12-13 18:51:09,331 | INFO     | exitcode: 0
[2025-12-13 13:52:22] 2025-12-13 18:51:09,331 | INFO     | exitmsg: OK
[2025-12-13 13:52:22] 2025-12-13 18:51:09,331 | INFO     | cpuconsumptiontime: 47853 s
[2025-12-13 13:52:22] 2025-12-13 18:51:09,331 | INFO     | nevents: 400
[2025-12-13 13:52:22] 2025-12-13 18:51:09,331 | INFO     | neventsw: 0
[2025-12-13 13:52:22] 2025-12-13 18:51:09,331 | INFO     | pid: 1403316
[2025-12-13 13:52:22] 2025-12-13 18:51:09,331 | INFO     | pgrp: 1403316
[2025-12-13 13:52:22] 2025-12-13 18:51:09,331 | INFO     | corecount: 9
[2025-12-13 13:52:22] 2025-12-13 18:51:09,331 | INFO     | event service: False
[2025-12-13 13:52:22] 2025-12-13 18:51:09,332 | INFO     | sizes: {0: 2283158, 1: 2284014, 2: 2284042, 13: 2284042, 24: 2284098, 33: 2284388, 35: 2284572, 51562: 2332001, 51569: 2340999, 51572: 2341055, 51591: 2341249}
[2025-12-13 13:52:22] 2025-12-13 18:51:09,332 | INFO     | --------------------------------------------------
[2025-12-13 13:52:22] 2025-12-13 18:51:09,332 | INFO     | 
[2025-12-13 13:52:22] 2025-12-13 18:51:09,332 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-13 13:52:22] 2025-12-13 18:51:09,403 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 13:52:22] 2025-12-13 18:51:09,403 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 13:52:22] 2025-12-13 18:51:09,403 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 13:52:22] 2025-12-13 18:51:09,404 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 13:52:22] 2025-12-13 18:51:09,404 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 13:52:22] 2025-12-13 18:51:09,404 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 13:52:22] 2025-12-13 18:51:09,404 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 13:52:22] 2025-12-13 18:51:09,404 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 13:52:22] 2025-12-13 18:51:09,404 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 13:52:22] 2025-12-13 18:51:09,404 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 13:52:22] 2025-12-13 18:51:09,404 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 13:52:22] 2025-12-13 18:51:09,404 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 13:52:22] 2025-12-13 18:51:09,404 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 13:52:22] 2025-12-13 18:51:09,404 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 13:52:22] 2025-12-13 18:51:09,404 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 13:52:22] 2025-12-13 18:51:09,405 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 13:52:22] 2025-12-13 18:51:09,405 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 13:52:22] 2025-12-13 18:51:09,405 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 13:52:22] 2025-12-13 18:51:09,405 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 13:52:22] 2025-12-13 18:51:09,405 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 13:52:22] 2025-12-13 18:51:09,405 | INFO     | job 6928824046 has completed (purged errors)
[2025-12-13 13:52:22] 2025-12-13 18:51:09,406 | INFO     | overall cleanup function is called
[2025-12-13 13:52:22] 2025-12-13 18:51:10,427 | INFO     | --- collectZombieJob: --- 10, [1403316]
[2025-12-13 13:52:22] 2025-12-13 18:51:10,471 | INFO     | zombie collector waiting for pid 1403316
[2025-12-13 13:52:22] 2025-12-13 18:51:10,471 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 13:52:22] 2025-12-13 18:51:10,472 | INFO     | collected zombie processes
[2025-12-13 13:52:22] 2025-12-13 18:51:10,472 | INFO     | will attempt to kill all subprocesses of pid=1403316
[2025-12-13 13:52:22] 2025-12-13 18:51:11,998 | INFO     | process IDs to be killed: [1403316] (in reverse order)
[2025-12-13 13:52:22] 2025-12-13 18:51:12,259 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 13:52:22] 2025-12-13 18:51:12,260 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 13:52:22] 2025-12-13 18:51:12,283 | INFO     | did not find any defunct processes belonging to 1403316
[2025-12-13 13:52:22] 2025-12-13 18:51:12,296 | INFO     | did not find any defunct processes belonging to 1403316
[2025-12-13 13:52:22] 2025-12-13 18:51:12,296 | INFO     | ready for new job
[2025-12-13 13:52:22] 2025-12-13 18:51:12,296 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 13:52:22] 2025-12-13 18:51:12,301 | INFO     | ***************************************
[2025-12-13 13:52:22] 2025-12-13 18:51:12,301 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 13:52:22] 2025-12-13 18:51:12,302 | INFO     | ***************************************
[2025-12-13 13:52:22] 2025-12-13 18:51:12,302 | INFO     | 
[2025-12-13 13:52:22] 2025-12-13 18:51:12,306 | INFO     | architecture information:
[2025-12-13 13:52:22] 2025-12-13 18:51:12,306 | INFO     | executing command: cat /etc/os-release
[2025-12-13 13:52:22] 2025-12-13 18:51:12,395 | INFO     | cat /etc/os-release:
[2025-12-13 13:52:22] NAME="CentOS Linux"
[2025-12-13 13:52:22] VERSION="7 (Core)"
[2025-12-13 13:52:22] ID="centos"
[2025-12-13 13:52:22] ID_LIKE="rhel fedora"
[2025-12-13 13:52:22] VERSION_ID="7"
[2025-12-13 13:52:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 13:52:22] ANSI_COLOR="0;31"
[2025-12-13 13:52:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 13:52:22] HOME_URL="https://www.centos.org/"
[2025-12-13 13:52:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 13:52:22] 
[2025-12-13 13:52:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 13:52:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 13:52:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 13:52:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 13:52:22] 
[2025-12-13 13:52:22] 2025-12-13 18:51:12,395 | INFO     | ***************************************
[2025-12-13 13:52:22] 2025-12-13 18:51:12,925 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-13 13:52:22] 2025-12-13 18:51:12,974 | INFO     | sufficient remaining disk space (71729938432 B)
[2025-12-13 13:52:22] 2025-12-13 18:51:12,974 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 13:52:22] 2025-12-13 18:51:12,974 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 13:52:22] 2025-12-13 18:51:12,974 | INFO     | update_server=False
[2025-12-13 13:52:22] 2025-12-13 18:51:12,974 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 13:52:22] 2025-12-13 18:51:12,975 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 13:52:22] 2025-12-13 18:51:12,975 | INFO     | aborting loop
[2025-12-13 13:52:22] 2025-12-13 18:51:12,975 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 13:52:22] 2025-12-13 18:51:13,394 | INFO     | all data control threads have been joined
[2025-12-13 13:52:22] 2025-12-13 18:51:13,432 | INFO     | all job control threads have been joined
[2025-12-13 13:52:22] 2025-12-13 18:51:13,980 | INFO     | [job] retrieve thread has finished
[2025-12-13 13:52:22] 2025-12-13 18:51:13,981 | INFO     | [job] job monitor thread has finished
[2025-12-13 13:52:22] 2025-12-13 18:51:14,050 | INFO     | all payload control threads have been joined
[2025-12-13 13:52:22] 2025-12-13 18:51:14,075 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 13:52:22] 2025-12-13 18:51:14,079 | INFO     | [data] copytool_in thread has finished
[2025-12-13 13:52:22] 2025-12-13 18:51:14,145 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 13:52:22] 2025-12-13 18:51:14,375 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 13:52:22] 2025-12-13 18:51:14,402 | INFO     | [data] control thread has finished
[2025-12-13 13:52:22] 2025-12-13 18:51:14,403 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 13:52:22] 2025-12-13 18:51:14,438 | INFO     | [job] control thread has finished
[2025-12-13 13:52:22] 2025-12-13 18:51:14,683 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 13:52:22] 2025-12-13 18:51:14,691 | INFO     | [job] validate thread has finished
[2025-12-13 13:52:22] 2025-12-13 18:51:14,982 | INFO     | [data] copytool_out thread has finished
[2025-12-13 13:52:22] 2025-12-13 18:51:15,056 | INFO     | [payload] control thread has finished
[2025-12-13 13:52:22] 2025-12-13 18:51:15,209 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 13:52:22] 2025-12-13 18:51:15,354 | INFO     | [payload] validate_post thread has finished
[2025-12-13 13:52:22] 2025-12-13 18:51:15,371 | INFO     | [payload] failed_post thread has finished
[2025-12-13 13:52:22] 2025-12-13 18:51:15,409 | INFO     | [job] queue monitor thread has finished
[2025-12-13 13:52:22] 2025-12-13 18:51:18,383 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 13:52:22] 2025-12-13 18:51:42,271 | INFO     | PID=1395767 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-13 13:52:22] 2025-12-13 18:51:42,271 | INFO     | .. there are 13 such processes running
[2025-12-13 13:52:22] 2025-12-13 18:51:42,275 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 13:52:22] 2025-12-13 18:51:42,276 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 13:52:22] 2025-12-13 18:51:42,276 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 13:52:22] 2025-12-13 18:51:53,257 | INFO     | [monitor] cgroup control has ended
[2025-12-13 13:52:22] 2025-12-13 18:51:54,987 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140607362287424)>', '<ExcThread(monitor, started 140606852540160)>']
[2025-12-13 13:52:22] 2025-12-13 18:51:55,356 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 13:52:22] 2025-12-13 18:51:55,357 | INFO     | [monitor] control thread has ended
[2025-12-13 13:52:22] 2025-12-13 18:52:00,013 | INFO     | all workflow threads have been joined
[2025-12-13 13:52:22] 2025-12-13 18:52:00,014 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 13:52:22] 2025-12-13 18:52:00,014 | INFO     | traces error code: 0
[2025-12-13 13:52:22] 2025-12-13 18:52:00,014 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 13:52:22] 2025-12-13 18:52:01,298 [wrapper] ==== pilot stdout END ====
[2025-12-13 13:52:22] 2025-12-13 18:52:01,314 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 13:52:22] 2025-12-13 18:52:01,330 [wrapper] pilotpid: 1395767
[2025-12-13 13:52:22] 2025-12-13 18:52:01,345 [wrapper] Pilot exit status: 0
[2025-12-13 13:52:22] 2025-12-13 18:52:01,491 [wrapper] pandaids: 6928824046
[2025-12-13 13:52:22] 2025-12-13 18:52:01,649 [wrapper] cleanup supervisor_pilot 2813432 1395768
[2025-12-13 13:52:22] 2025-12-13 18:52:01,675 [wrapper] Test setup, not cleaning
[2025-12-13 13:52:22] 2025-12-13 18:52:01,695 [wrapper] apfmon messages muted
[2025-12-13 13:52:22] 2025-12-13 18:52:01,718 [wrapper] ==== wrapper stdout END ====
[2025-12-13 13:52:22] 2025-12-13 18:52:01,737 [wrapper] ==== wrapper stderr END ====
[2025-12-13 13:52:22]  *** Error codes and diagnostics ***
[2025-12-13 13:52:22]     "exeErrorCode": 0,
[2025-12-13 13:52:22]     "exeErrorDiag": "",
[2025-12-13 13:52:22]     "pilotErrorCode": 0,
[2025-12-13 13:52:22]     "pilotErrorDiag": "",
[2025-12-13 13:52:22]  *** Listing of results directory ***
[2025-12-13 13:52:22] total 347020
[2025-12-13 13:52:22] -rw-r--r--. 1 boincer umatlas    579449 Dec 12 20:46 pilot3.tar.gz
[2025-12-13 13:52:22] -rwx------. 1 boincer umatlas     36322 Dec 12 20:50 runpilot2-wrapper.sh
[2025-12-13 13:52:22] -rw-r--r--. 1 boincer umatlas      5112 Dec 12 20:51 queuedata.json
[2025-12-13 13:52:22] -rw-r--r--. 1 boincer umatlas       100 Dec 12 23:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 13:52:22] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 12 23:28 run_atlas
[2025-12-13 13:52:22] -rw-r--r--. 1 boincer umatlas       105 Dec 12 23:28 job.xml
[2025-12-13 13:52:22] -rw-r--r--. 2 boincer umatlas 191287514 Dec 12 23:28 EVNT.47886829._000064.pool.root.1
[2025-12-13 13:52:22] -rw-r--r--. 2 boincer umatlas     15847 Dec 12 23:28 start_atlas.sh
[2025-12-13 13:52:22] drwxrwx--x. 2 boincer umatlas      4096 Dec 12 23:28 shared
[2025-12-13 13:52:22] -rw-r--r--. 2 boincer umatlas    592406 Dec 12 23:28 input.tar.gz
[2025-12-13 13:52:22] -rw-r--r--. 1 boincer umatlas         0 Dec 12 23:28 boinc_lockfile
[2025-12-13 13:52:22] -rw-r--r--. 1 boincer umatlas      2535 Dec 12 23:28 pandaJob.out
[2025-12-13 13:52:22] -rw-------. 1 boincer umatlas        57 Dec 12 23:29 setup.sh.local
[2025-12-13 13:52:22] -rw-------. 1 boincer umatlas    991736 Dec 12 23:30 agis_schedconf.cvmfs.json
[2025-12-13 13:52:22] drwx------. 5 boincer umatlas      4096 Dec 12 23:30 pilot3
[2025-12-13 13:52:22] -rw-r--r--. 1 boincer umatlas      6844 Dec 13 13:45 init_data.xml
[2025-12-13 13:52:22] -rw-------. 1 boincer umatlas 146306586 Dec 13 13:48 HITS.47886831._001594.pool.root.1
[2025-12-13 13:52:22] -rw-r--r--. 1 boincer umatlas       531 Dec 13 13:49 boinc_task_state.xml
[2025-12-13 13:52:22] -rw-------. 1 boincer umatlas      1050 Dec 13 13:50 memory_monitor_summary.json
[2025-12-13 13:52:22] -rw-------. 1 boincer umatlas   1516240 Dec 13 13:50 agis_ddmendpoints.agis.ALL.json
[2025-12-13 13:52:22] -rw-------. 1 boincer umatlas    909419 Dec 13 13:50 log.47886831._001594.job.log.tgz.1
[2025-12-13 13:52:22] -rw-------. 1 boincer umatlas      7838 Dec 13 13:51 heartbeat.json
[2025-12-13 13:52:22] -rw-------. 1 boincer umatlas        95 Dec 13 13:51 pilot_heartbeat.json
[2025-12-13 13:52:22] -rw-------. 1 boincer umatlas      4824 Dec 13 13:52 pilotlog.txt
[2025-12-13 13:52:22] -rw-------. 1 boincer umatlas   6005250 Dec 13 13:52 log.47886831._001594.job.log.1
[2025-12-13 13:52:22] -rw-------. 1 boincer umatlas       357 Dec 13 13:52 output.list
[2025-12-13 13:52:22] -rw-r--r--. 1 boincer umatlas       620 Dec 13 13:52 runtime_log
[2025-12-13 13:52:22] -rw-------. 1 boincer umatlas   6932480 Dec 13 13:52 result.tar.gz
[2025-12-13 13:52:22] -rw-r--r--. 1 boincer umatlas      9353 Dec 13 13:52 runtime_log.err
[2025-12-13 13:52:22] -rw-------. 1 boincer umatlas       663 Dec 13 13:52 adHKDmjxTo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9PRKDmwChcJn.diag
[2025-12-13 13:52:22] -rw-r--r--. 1 boincer umatlas      8192 Dec 13 13:52 boinc_mmap_file
[2025-12-13 13:52:22] -rw-r--r--. 1 boincer umatlas        28 Dec 13 13:52 wrapper_checkpoint.txt
[2025-12-13 13:52:22] -rw-r--r--. 1 boincer umatlas     21238 Dec 13 13:52 stderr.txt
[2025-12-13 13:52:22] HITS file was successfully produced:
[2025-12-13 13:52:22] -rw-------. 1 boincer umatlas 146306586 Dec 13 13:48 shared/HITS.pool.root.1
[2025-12-13 13:52:22]  *** Contents of shared directory: ***
[2025-12-13 13:52:22] total 337060
[2025-12-13 13:52:22] -rw-r--r--. 2 boincer umatlas 191287514 Dec 12 23:28 ATLAS.root_0
[2025-12-13 13:52:22] -rw-r--r--. 2 boincer umatlas     15847 Dec 12 23:28 start_atlas.sh
[2025-12-13 13:52:22] -rw-r--r--. 2 boincer umatlas    592406 Dec 12 23:28 input.tar.gz
[2025-12-13 13:52:22] -rw-------. 1 boincer umatlas 146306586 Dec 13 13:48 HITS.pool.root.1
[2025-12-13 13:52:22] -rw-------. 1 boincer umatlas   6932480 Dec 13 13:52 result.tar.gz
13:52:24 (1391127): run_atlas exited; CPU time 49244.468834
13:52:24 (1391127): called boinc_finish(0)

</stderr_txt>
]]>

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