Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:00:35 (2224): wrapper (7.7.26015): starting
21:00:35 (2224): wrapper: running run_atlas (--nthreads 12)
[2025-12-12 21:00:35] Arguments: --nthreads 12
[2025-12-12 21:00:35] Threads: 12
[2025-12-12 21:00:35] Checking for CVMFS
[2025-12-12 21:00:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-12 21:00:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-12 21:00:36] Running cvmfs_config stat atlas.cern.ch
[2025-12-12 21:00:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-12 21:00:36] 2.11.2.0 2998 127247 97688 153943 1 1 12054358 20275200 1 130560 0 52101841 99.954 5660256 35247 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-12 21:00:36] CVMFS is ok
[2025-12-12 21:00:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-12 21:00:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-12 21:00:36] Further information can be found at the LHC@home message board.
[2025-12-12 21:00:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-12 21:00:36] Checking for apptainer binary...
[2025-12-12 21:00:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-12 21:00:36] Running /usr/bin/apptainer --version
[2025-12-12 21:00:36] apptainer version 1.3.2-1.el7
[2025-12-12 21:00:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-12 21:00:37] c-205-12.aglt2.org
[2025-12-12 21:00:37] apptainer works
[2025-12-12 21:00:37] Set ATHENA_PROC_NUMBER=12
[2025-12-12 21:00:37] Set ATHENA_CORE_NUMBER=12
[2025-12-12 21:00:37] Starting ATLAS job with PandaID=6928824140
[2025-12-12 21:00:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-12 22:18:07]  *** The last 200 lines of the pilot log: ***
[2025-12-12 22:18:07]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6928824140/log.47886831._001688.job.log.tgz.1
[2025-12-12 22:18:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/41/log.47886831._001688.job.log.tgz.1
[2025-12-12 22:18:07]  workdir=None
[2025-12-12 22:18:07] ]
[2025-12-12 22:18:07] 2025-12-13 03:17:11,458 | INFO     | transferring file log.47886831._001688.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6928824140/log.47886831._001688.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-12 22:18:07] 2025-12-13 03:17:11,458 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6928824140/log.47886831._001688.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886831._001688.job
[2025-12-12 22:18:07] 2025-12-13 03:17:11,483 | INFO     | adding to output.list: log.47886831._001688.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/41/log.47886831._001688.job.log.tg
[2025-12-12 22:18:07] 2025-12-13 03:17:11,484 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-12 22:18:07] 2025-12-13 03:17:11,484 | INFO     | summary of transferred files:
[2025-12-12 22:18:07] 2025-12-13 03:17:11,484 | INFO     |  -- lfn=log.47886831._001688.job.log.tgz.1, status_code=0, status=transferred
[2025-12-12 22:18:07] 2025-12-13 03:17:11,484 | INFO     | stage-out finished correctly
[2025-12-12 22:18:07] 2025-12-13 03:17:12,347 | INFO     | time since job start (4578s) is within the limit (174528.0s)
[2025-12-12 22:18:07] 2025-12-13 03:17:14,351 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-12 22:18:07] 2025-12-13 03:17:14,357 | INFO     | time since job start (4580s) is within the limit (174528.0s)
[2025-12-12 22:18:07] 2025-12-13 03:17:15,591 | WARNING  | process 12743 can no longer be monitored (due to stat problems) - aborting
[2025-12-12 22:18:07] 2025-12-13 03:17:15,591 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6928824140/memory_monitor_summary.json (trf name=prmon)
[2025-12-12 22:18:07] 2025-12-13 03:17:15,676 | INFO     | number of running child processes to parent process 12743: 1
[2025-12-12 22:18:07] 2025-12-13 03:17:15,676 | INFO     | maximum number of monitored processes: 6
[2025-12-12 22:18:07] 2025-12-13 03:17:16,364 | INFO     | time since job start (4582s) is within the limit (174528.0s)
[2025-12-12 22:18:07] 2025-12-13 03:17:17,413 | INFO     | job 6928824140 has state=finished
[2025-12-12 22:18:07] 2025-12-13 03:17:17,413 | INFO     | preparing for final server update for job 6928824140 in state='finished'
[2025-12-12 22:18:07] 2025-12-13 03:17:17,413 | INFO     | this job has now completed (state=finished)
[2025-12-12 22:18:07] 2025-12-13 03:17:17,414 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-12 22:18:07] 2025-12-13 03:17:17,414 | INFO     | log transfer has been attempted: DONE
[2025-12-12 22:18:07] 2025-12-13 03:17:17,414 | INFO     | job 6928824140 has finished - writing final server update
[2025-12-12 22:18:07] 2025-12-13 03:17:17,414 | INFO     | total number of processed events: 400 (read)
[2025-12-12 22:18:07] 2025-12-13 03:17:17,415 | INFO     | executing command: lscpu
[2025-12-12 22:18:07] 2025-12-13 03:17:17,444 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-12 22:18:07] 2025-12-13 03:17:18,179 | INFO     | monitor loop #342: job 0:6928824140 is in state 'finished'
[2025-12-12 22:18:07] 2025-12-13 03:17:18,179 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-12 22:18:07] 2025-12-13 03:17:18,370 | INFO     | time since job start (4584s) is within the limit (174528.0s)
[2025-12-12 22:18:07] 2025-12-13 03:17:20,375 | INFO     | time since job start (4586s) is within the limit (174528.0s)
[2025-12-12 22:18:07] 2025-12-13 03:17:20,682 | INFO     | monitor loop #343: job 0:6928824140 is in state 'finished'
[2025-12-12 22:18:07] 2025-12-13 03:17:20,682 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-12 22:18:07] 2025-12-13 03:17:22,381 | INFO     | time since job start (4588s) is within the limit (174528.0s)
[2025-12-12 22:18:07] 2025-12-13 03:17:23,185 | INFO     | monitor loop #344: job 0:6928824140 is in state 'finished'
[2025-12-12 22:18:07] 2025-12-13 03:17:23,185 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-12 22:18:07] 2025-12-13 03:17:23,340 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-12 22:18:07] 2025-12-13 03:17:23,344 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1740.1666666666667
[2025-12-12 22:18:07] 2025-12-13 03:17:23,347 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6928824140/memory_monitor_summary.json (trf name=prmon)
[2025-12-12 22:18:07] 2025-12-13 03:17:23,349 | INFO     | extracted standard info from prmon json
[2025-12-12 22:18:07] 2025-12-13 03:17:23,349 | INFO     | extracted standard memory fields from prmon json
[2025-12-12 22:18:07] 2025-12-13 03:17:23,349 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-12 22:18:07] 2025-12-13 03:17:23,350 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-12 22:18:07] 2025-12-13 03:17:23,350 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-12 22:18:07] 2025-12-13 03:17:23,352 | INFO     | fitting pss+swap vs Time
[2025-12-12 22:18:07] 2025-12-13 03:17:23,352 | INFO     | sum of square deviations: 97479037.0
[2025-12-12 22:18:07] 2025-12-13 03:17:23,352 | INFO     | sum of deviations: -2432182606.0
[2025-12-12 22:18:07] 2025-12-13 03:17:23,352 | INFO     | mean x: 1765593632.5
[2025-12-12 22:18:07] 2025-12-13 03:17:23,353 | INFO     | mean y: 2686763.7647058824
[2025-12-12 22:18:07] 2025-12-13 03:17:23,353 | INFO     | intersect: 44055708360.919556
[2025-12-12 22:18:07] 2025-12-13 03:17:23,353 | INFO     | chi2: 0.08145618794279558
[2025-12-12 22:18:07] 2025-12-13 03:17:23,353 | INFO     | current memory leak: -24.95 B/s (using 68 data points, chi2=0.08)
[2025-12-12 22:18:07] 2025-12-13 03:17:23,353 | INFO     | could have reported an average CPU frequency of 2045 MHz (6 samples)
[2025-12-12 22:18:07] 2025-12-13 03:17:23,354 | INFO     | ..............................
[2025-12-12 22:18:07] 2025-12-13 03:17:23,354 | INFO     | . Timing measurements:
[2025-12-12 22:18:07] 2025-12-13 03:17:23,354 | INFO     | . get job = 0 s
[2025-12-12 22:18:07] 2025-12-13 03:17:23,354 | INFO     | . initial setup = 2 s
[2025-12-12 22:18:07] 2025-12-13 03:17:23,354 | INFO     | . payload setup = 7 s
[2025-12-12 22:18:07] 2025-12-13 03:17:23,354 | INFO     | . stage-in = 0 s
[2025-12-12 22:18:07] 2025-12-13 03:17:23,354 | INFO     | . payload execution = 4548 s
[2025-12-12 22:18:07] 2025-12-13 03:17:23,354 | INFO     | . stage-out = 0 s
[2025-12-12 22:18:07] 2025-12-13 03:17:23,354 | INFO     | . log creation = 0 s
[2025-12-12 22:18:07] 2025-12-13 03:17:23,354 | INFO     | ..............................
[2025-12-12 22:18:07] 2025-12-13 03:17:23,882 | INFO     | 
[2025-12-12 22:18:07] 2025-12-13 03:17:23,882 | INFO     | job summary report
[2025-12-12 22:18:07] 2025-12-13 03:17:23,882 | INFO     | --------------------------------------------------
[2025-12-12 22:18:07] 2025-12-13 03:17:23,882 | INFO     | PanDA job id: 6928824140
[2025-12-12 22:18:07] 2025-12-13 03:17:23,882 | INFO     | task id: 47886831
[2025-12-12 22:18:07] 2025-12-13 03:17:23,882 | INFO     | errors: (none)
[2025-12-12 22:18:07] 2025-12-13 03:17:23,883 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-12 22:18:07] 2025-12-13 03:17:23,883 | INFO     | pilot state: finished 
[2025-12-12 22:18:07] 2025-12-13 03:17:23,883 | INFO     | transexitcode: 0
[2025-12-12 22:18:07] 2025-12-13 03:17:23,883 | INFO     | exeerrorcode: 0
[2025-12-12 22:18:07] 2025-12-13 03:17:23,883 | INFO     | exeerrordiag: 
[2025-12-12 22:18:07] 2025-12-13 03:17:23,883 | INFO     | exitcode: 0
[2025-12-12 22:18:07] 2025-12-13 03:17:23,884 | INFO     | exitmsg: OK
[2025-12-12 22:18:07] 2025-12-13 03:17:23,884 | INFO     | cpuconsumptiontime: 47847 s
[2025-12-12 22:18:07] 2025-12-13 03:17:23,884 | INFO     | nevents: 400
[2025-12-12 22:18:07] 2025-12-13 03:17:23,884 | INFO     | neventsw: 0
[2025-12-12 22:18:07] 2025-12-13 03:17:23,884 | INFO     | pid: 12743
[2025-12-12 22:18:07] 2025-12-13 03:17:23,884 | INFO     | pgrp: 12743
[2025-12-12 22:18:07] 2025-12-13 03:17:23,885 | INFO     | corecount: 12
[2025-12-12 22:18:07] 2025-12-13 03:17:23,885 | INFO     | event service: False
[2025-12-12 22:18:07] 2025-12-13 03:17:23,885 | INFO     | sizes: {0: 2283872, 1: 2284014, 6: 2284276, 11: 2284304, 4559: 2310399, 4560: 2310398, 4561: 2319580, 4564: 2319636, 4573: 2319830}
[2025-12-12 22:18:07] 2025-12-13 03:17:23,885 | INFO     | --------------------------------------------------
[2025-12-12 22:18:07] 2025-12-13 03:17:23,885 | INFO     | 
[2025-12-12 22:18:07] 2025-12-13 03:17:23,885 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-12 22:18:07] 2025-12-13 03:17:23,910 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-12 22:18:07] 2025-12-13 03:17:23,911 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-12 22:18:07] 2025-12-13 03:17:23,911 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-12 22:18:07] 2025-12-13 03:17:23,911 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-12 22:18:07] 2025-12-13 03:17:23,911 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-12 22:18:07] 2025-12-13 03:17:23,912 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-12 22:18:07] 2025-12-13 03:17:23,912 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-12 22:18:07] 2025-12-13 03:17:23,912 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-12 22:18:07] 2025-12-13 03:17:23,912 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-12 22:18:07] 2025-12-13 03:17:23,912 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-12 22:18:07] 2025-12-13 03:17:23,913 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-12 22:18:07] 2025-12-13 03:17:23,913 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-12 22:18:07] 2025-12-13 03:17:23,913 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-12 22:18:07] 2025-12-13 03:17:23,913 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-12 22:18:07] 2025-12-13 03:17:23,913 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-12 22:18:07] 2025-12-13 03:17:23,913 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-12 22:18:07] 2025-12-13 03:17:23,914 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-12 22:18:07] 2025-12-13 03:17:23,914 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-12 22:18:07] 2025-12-13 03:17:23,914 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-12 22:18:07] 2025-12-13 03:17:23,914 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-12 22:18:07] 2025-12-13 03:17:23,914 | INFO     | job 6928824140 has completed (purged errors)
[2025-12-12 22:18:07] 2025-12-13 03:17:23,915 | INFO     | overall cleanup function is called
[2025-12-12 22:18:07] 2025-12-13 03:17:24,923 | INFO     | --- collectZombieJob: --- 10, [12743]
[2025-12-12 22:18:07] 2025-12-13 03:17:24,923 | INFO     | zombie collector waiting for pid 12743
[2025-12-12 22:18:07] 2025-12-13 03:17:24,923 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-12 22:18:07] 2025-12-13 03:17:24,924 | INFO     | collected zombie processes
[2025-12-12 22:18:07] 2025-12-13 03:17:24,924 | INFO     | will attempt to kill all subprocesses of pid=12743
[2025-12-12 22:18:07] 2025-12-13 03:17:25,016 | INFO     | process IDs to be killed: [12743] (in reverse order)
[2025-12-12 22:18:07] 2025-12-13 03:17:25,066 | WARNING  | found no corresponding commands to process id(s)
[2025-12-12 22:18:07] 2025-12-13 03:17:25,066 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-12 22:18:07] 2025-12-13 03:17:25,070 | INFO     | did not find any defunct processes belonging to 12743
[2025-12-12 22:18:07] 2025-12-13 03:17:25,072 | INFO     | did not find any defunct processes belonging to 12743
[2025-12-12 22:18:07] 2025-12-13 03:17:25,072 | INFO     | ready for new job
[2025-12-12 22:18:07] 2025-12-13 03:17:25,073 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-12 22:18:07] 2025-12-13 03:17:25,074 | INFO     | ***************************************
[2025-12-12 22:18:07] 2025-12-13 03:17:25,074 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-12 22:18:07] 2025-12-13 03:17:25,074 | INFO     | ***************************************
[2025-12-12 22:18:07] 2025-12-13 03:17:25,074 | INFO     | 
[2025-12-12 22:18:07] 2025-12-13 03:17:25,075 | INFO     | architecture information:
[2025-12-12 22:18:07] 2025-12-13 03:17:25,075 | INFO     | executing command: cat /etc/os-release
[2025-12-12 22:18:07] 2025-12-13 03:17:25,090 | INFO     | cat /etc/os-release:
[2025-12-12 22:18:07] NAME="CentOS Linux"
[2025-12-12 22:18:07] VERSION="7 (Core)"
[2025-12-12 22:18:07] ID="centos"
[2025-12-12 22:18:07] ID_LIKE="rhel fedora"
[2025-12-12 22:18:07] VERSION_ID="7"
[2025-12-12 22:18:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-12 22:18:07] ANSI_COLOR="0;31"
[2025-12-12 22:18:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-12 22:18:07] HOME_URL="https://www.centos.org/"
[2025-12-12 22:18:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-12 22:18:07] 
[2025-12-12 22:18:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-12 22:18:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-12 22:18:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-12 22:18:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-12 22:18:07] 
[2025-12-12 22:18:07] 2025-12-13 03:17:25,090 | INFO     | ***************************************
[2025-12-12 22:18:07] 2025-12-13 03:17:25,593 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-12 22:18:07] 2025-12-13 03:17:25,610 | INFO     | sufficient remaining disk space (29459742720 B)
[2025-12-12 22:18:07] 2025-12-13 03:17:25,610 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-12 22:18:07] 2025-12-13 03:17:25,611 | INFO     | current server update state: UPDATING_FINAL
[2025-12-12 22:18:07] 2025-12-13 03:17:25,611 | INFO     | update_server=False
[2025-12-12 22:18:07] 2025-12-13 03:17:25,611 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-12 22:18:07] 2025-12-13 03:17:25,611 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-12 22:18:07] 2025-12-13 03:17:25,687 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-12 22:18:07] 2025-12-13 03:17:25,687 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-12 22:18:07] 2025-12-13 03:17:25,687 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-12 22:18:07] 2025-12-13 03:17:25,687 | INFO     | will abort loop
[2025-12-12 22:18:07] 2025-12-13 03:17:25,720 | INFO     | all data control threads have been joined
[2025-12-12 22:18:07] 2025-12-13 03:17:26,617 | INFO     | [job] retrieve thread has finished
[2025-12-12 22:18:07] 2025-12-13 03:17:26,619 | INFO     | [job] validate thread has finished
[2025-12-12 22:18:07] 2025-12-13 03:17:26,692 | INFO     | [job] job monitor thread has finished
[2025-12-12 22:18:07] 2025-12-13 03:17:26,725 | INFO     | [data] control thread has finished
[2025-12-12 22:18:07] 2025-12-13 03:17:26,764 | INFO     | [job] create_data_payload thread has finished
[2025-12-12 22:18:07] 2025-12-13 03:17:26,839 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-12 22:18:07] 2025-12-13 03:17:26,989 | INFO     | all payload control threads have been joined
[2025-12-12 22:18:07] 2025-12-13 03:17:27,008 | INFO     | [payload] validate_pre thread has finished
[2025-12-12 22:18:07] 2025-12-13 03:17:27,088 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-12 22:18:07] 2025-12-13 03:17:27,187 | INFO     | all job control threads have been joined
[2025-12-12 22:18:07] 2025-12-13 03:17:27,210 | INFO     | [payload] failed_post thread has finished
[2025-12-12 22:18:07] 2025-12-13 03:17:27,386 | INFO     | [data] copytool_in thread has finished
[2025-12-12 22:18:07] 2025-12-13 03:17:27,617 | INFO     | [payload] execute_payloads thread has finished
[2025-12-12 22:18:07] 2025-12-13 03:17:27,799 | INFO     | [payload] validate_post thread has finished
[2025-12-12 22:18:07] 2025-12-13 03:17:27,995 | INFO     | [payload] control thread has finished
[2025-12-12 22:18:07] 2025-12-13 03:17:28,193 | INFO     | [job] control thread has finished
[2025-12-12 22:18:07] 2025-12-13 03:17:28,449 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-12 22:18:07] 2025-12-13 03:17:29,094 | INFO     | [data] copytool_out thread has finished
[2025-12-12 22:18:07] 2025-12-13 03:17:29,455 | INFO     | [job] queue monitor thread has finished
[2025-12-12 22:18:07] 2025-12-13 03:17:29,617 | INFO     | [data] queue_monitor thread has finished
[2025-12-12 22:18:07] 2025-12-13 03:17:55,592 | INFO     | PID=6322 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-12 22:18:07] 2025-12-13 03:17:55,593 | INFO     | found 0 job(s) in 20 queues
[2025-12-12 22:18:07] 2025-12-13 03:17:55,593 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-12 22:18:07] 2025-12-13 03:17:55,593 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-12 22:18:07] 2025-12-13 03:18:01,327 | INFO     | [monitor] cgroup control has ended
[2025-12-12 22:18:07] 2025-12-13 03:18:02,617 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140340614362944)>', '<ExcThread(monitor, started 140339708937984)>']
[2025-12-12 22:18:07] 2025-12-13 03:18:03,615 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-12 22:18:07] 2025-12-13 03:18:03,615 | INFO     | [monitor] control thread has ended
[2025-12-12 22:18:07] 2025-12-13 03:18:07,640 | INFO     | all workflow threads have been joined
[2025-12-12 22:18:07] 2025-12-13 03:18:07,640 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-12 22:18:07] 2025-12-13 03:18:07,640 | INFO     | traces error code: 0
[2025-12-12 22:18:07] 2025-12-13 03:18:07,641 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-12 22:18:07] 2025-12-13 03:18:07,739 [wrapper] ==== pilot stdout END ====
[2025-12-12 22:18:07] 2025-12-13 03:18:07,743 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-12 22:18:07] 2025-12-13 03:18:07,747 [wrapper] pilotpid: 6322
[2025-12-12 22:18:07] 2025-12-13 03:18:07,751 [wrapper] Pilot exit status: 0
[2025-12-12 22:18:07] 2025-12-13 03:18:07,767 [wrapper] pandaids: 6928824140
[2025-12-12 22:18:07] 2025-12-13 03:18:07,813 [wrapper] cleanup supervisor_pilot  8259 6323
[2025-12-12 22:18:07] 2025-12-13 03:18:07,818 [wrapper] Test setup, not cleaning
[2025-12-12 22:18:07] 2025-12-13 03:18:07,822 [wrapper] apfmon messages muted
[2025-12-12 22:18:07] 2025-12-13 03:18:07,826 [wrapper] ==== wrapper stdout END ====
[2025-12-12 22:18:07] 2025-12-13 03:18:07,830 [wrapper] ==== wrapper stderr END ====
[2025-12-12 22:18:07]  *** Error codes and diagnostics ***
[2025-12-12 22:18:07]     "exeErrorCode": 0,
[2025-12-12 22:18:07]     "exeErrorDiag": "",
[2025-12-12 22:18:07]     "pilotErrorCode": 0,
[2025-12-12 22:18:07]     "pilotErrorDiag": "",
[2025-12-12 22:18:07]  *** Listing of results directory ***
[2025-12-12 22:18:07] total 333564
[2025-12-12 22:18:07] -rw-r--r-- 1 boincer umatlas    579449 Dec 12 20:46 pilot3.tar.gz
[2025-12-12 22:18:07] -rwx------ 1 boincer umatlas     36322 Dec 12 20:50 runpilot2-wrapper.sh
[2025-12-12 22:18:07] -rw-r--r-- 1 boincer umatlas      5112 Dec 12 20:51 queuedata.json
[2025-12-12 22:18:07] -rw-r--r-- 1 boincer umatlas       100 Dec 12 21:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-12 22:18:07] -rwxr-xr-x 1 boincer umatlas      7986 Dec 12 21:00 run_atlas
[2025-12-12 22:18:07] -rw-r--r-- 1 boincer umatlas       105 Dec 12 21:00 job.xml
[2025-12-12 22:18:07] -rw-r--r-- 2 boincer umatlas 192155648 Dec 12 21:00 EVNT.47886829._000068.pool.root.1
[2025-12-12 22:18:07] drwxrwx--x 2 boincer umatlas      4096 Dec 12 21:00 shared
[2025-12-12 22:18:07] -rw-r--r-- 2 boincer umatlas    592410 Dec 12 21:00 input.tar.gz
[2025-12-12 22:18:07] -rw-r--r-- 2 boincer umatlas     15847 Dec 12 21:00 start_atlas.sh
[2025-12-12 22:18:07] -rw-r--r-- 1 boincer umatlas         0 Dec 12 21:00 boinc_lockfile
[2025-12-12 22:18:07] -rw-r--r-- 1 boincer umatlas      2535 Dec 12 21:00 pandaJob.out
[2025-12-12 22:18:07] -rw------- 1 boincer umatlas        57 Dec 12 21:00 setup.sh.local
[2025-12-12 22:18:07] -rw------- 1 boincer umatlas    991720 Dec 12 21:00 agis_schedconf.cvmfs.json
[2025-12-12 22:18:07] -rw------- 1 boincer umatlas   1516240 Dec 12 21:00 agis_ddmendpoints.agis.ALL.json
[2025-12-12 22:18:07] drwx------ 5 boincer umatlas      4096 Dec 12 21:00 pilot3
[2025-12-12 22:18:07] -rw-r--r-- 1 boincer umatlas      5953 Dec 12 22:12 init_data.xml
[2025-12-12 22:18:07] -rw------- 1 boincer umatlas 143403976 Dec 12 22:16 HITS.47886831._001688.pool.root.1
[2025-12-12 22:18:07] -rw------- 1 boincer umatlas      1045 Dec 12 22:17 memory_monitor_summary.json
[2025-12-12 22:18:07] -rw-r--r-- 1 boincer umatlas       529 Dec 12 22:17 boinc_task_state.xml
[2025-12-12 22:18:07] -rw------- 1 boincer umatlas    382359 Dec 12 22:17 log.47886831._001688.job.log.tgz.1
[2025-12-12 22:18:07] -rw------- 1 boincer umatlas      7843 Dec 12 22:17 heartbeat.json
[2025-12-12 22:18:07] -rw------- 1 boincer umatlas        95 Dec 12 22:17 pilot_heartbeat.json
[2025-12-12 22:18:07] -rw-r--r-- 1 boincer umatlas      8192 Dec 12 22:17 boinc_mmap_file
[2025-12-12 22:18:07] -rw-r--r-- 1 boincer umatlas        27 Dec 12 22:17 wrapper_checkpoint.txt
[2025-12-12 22:18:07] -rw------- 1 boincer umatlas      4931 Dec 12 22:18 pilotlog.txt
[2025-12-12 22:18:07] -rw------- 1 boincer umatlas    663946 Dec 12 22:18 log.47886831._001688.job.log.1
[2025-12-12 22:18:07] -rw------- 1 boincer umatlas       357 Dec 12 22:18 output.list
[2025-12-12 22:18:07] -rw-r--r-- 1 boincer umatlas       620 Dec 12 22:18 runtime_log
[2025-12-12 22:18:07] -rw------- 1 boincer umatlas   1064960 Dec 12 22:18 result.tar.gz
[2025-12-12 22:18:07] -rw------- 1 boincer umatlas       660 Dec 12 22:18 wTnNDmixTo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAaNKDm6DqtJm.diag
[2025-12-12 22:18:07] -rw-r--r-- 1 boincer umatlas      9344 Dec 12 22:18 runtime_log.err
[2025-12-12 22:18:07] -rw-r--r-- 1 boincer umatlas     22356 Dec 12 22:18 stderr.txt
[2025-12-12 22:18:07] HITS file was successfully produced:
[2025-12-12 22:18:07] -rw------- 1 boincer umatlas 143403976 Dec 12 22:16 shared/HITS.pool.root.1
[2025-12-12 22:18:07]  *** Contents of shared directory: ***
[2025-12-12 22:18:07] total 329336
[2025-12-12 22:18:07] -rw-r--r-- 2 boincer umatlas 192155648 Dec 12 21:00 ATLAS.root_0
[2025-12-12 22:18:07] -rw-r--r-- 2 boincer umatlas    592410 Dec 12 21:00 input.tar.gz
[2025-12-12 22:18:07] -rw-r--r-- 2 boincer umatlas     15847 Dec 12 21:00 start_atlas.sh
[2025-12-12 22:18:07] -rw------- 1 boincer umatlas 143403976 Dec 12 22:16 HITS.pool.root.1
[2025-12-12 22:18:07] -rw------- 1 boincer umatlas   1064960 Dec 12 22:18 result.tar.gz
22:18:09 (2224): run_atlas exited; CPU time 47837.882508
22:18:09 (2224): called boinc_finish(0)

</stderr_txt>
]]>

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