Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:57:24 (13844): wrapper (7.7.26015): starting
20:57:24 (13844): wrapper: running run_atlas (--nthreads 12)
[2025-12-12 20:57:24] Arguments: --nthreads 12
[2025-12-12 20:57:24] Threads: 12
[2025-12-12 20:57:24] Checking for CVMFS
[2025-12-12 20:57:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-12 20:57:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-12 20:57:25] Running cvmfs_config stat atlas.cern.ch
[2025-12-12 20:57:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-12 20:57:25] 2.11.2.0 2945 311531 94464 153943 0 1 12720279 20275200 1 130560 2 136681962 99.963 18398723 15414 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-12 20:57:25] CVMFS is ok
[2025-12-12 20:57:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-12 20:57:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-12 20:57:25] Further information can be found at the LHC@home message board.
[2025-12-12 20:57:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-12 20:57:25] Checking for apptainer binary...
[2025-12-12 20:57:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-12 20:57:25] Running /usr/bin/apptainer --version
[2025-12-12 20:57:25] apptainer version 1.3.2-1.el7
[2025-12-12 20:57:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-12 20:57:26] c-205-2.aglt2.org
[2025-12-12 20:57:26] apptainer works
[2025-12-12 20:57:26] Set ATHENA_PROC_NUMBER=12
[2025-12-12 20:57:26] Set ATHENA_CORE_NUMBER=12
[2025-12-12 20:57:26] Starting ATLAS job with PandaID=6928822778
[2025-12-12 20:57:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-12 22:14:57]  *** The last 200 lines of the pilot log: ***
[2025-12-12 22:14:57]  scope=mc23_13p6TeV
[2025-12-12 22:14:57]  status=None
[2025-12-12 22:14:57]  status_code=0
[2025-12-12 22:14:57]  storage_token=
[2025-12-12 22:14:57]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6928822778/log.47886831._001336.job.log.tgz.1
[2025-12-12 22:14:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b4/bf/log.47886831._001336.job.log.tgz.1
[2025-12-12 22:14:57]  workdir=None
[2025-12-12 22:14:57] ]
[2025-12-12 22:14:57] 2025-12-13 03:13:49,771 | INFO     | transferring file log.47886831._001336.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6928822778/log.47886831._001336.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-12 22:14:57] 2025-12-13 03:13:49,772 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6928822778/log.47886831._001336.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886831._001336.job
[2025-12-12 22:14:57] 2025-12-13 03:13:49,796 | INFO     | adding to output.list: log.47886831._001336.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b4/bf/log.47886831._001336.job.log.tg
[2025-12-12 22:14:57] 2025-12-13 03:13:49,797 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-12 22:14:57] 2025-12-13 03:13:49,798 | INFO     | summary of transferred files:
[2025-12-12 22:14:57] 2025-12-13 03:13:49,798 | INFO     |  -- lfn=log.47886831._001336.job.log.tgz.1, status_code=0, status=transferred
[2025-12-12 22:14:57] 2025-12-13 03:13:49,798 | INFO     | stage-out finished correctly
[2025-12-12 22:14:57] 2025-12-13 03:13:49,877 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-12 22:14:57] 2025-12-13 03:13:50,017 | INFO     | time since job start (4567s) is within the limit (174528.0s)
[2025-12-12 22:14:57] 2025-12-13 03:13:50,436 | INFO     | job 6928822778 has state=finished
[2025-12-12 22:14:57] 2025-12-13 03:13:50,436 | INFO     | preparing for final server update for job 6928822778 in state='finished'
[2025-12-12 22:14:57] 2025-12-13 03:13:50,503 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-12-12 22:14:57] 2025-12-13 03:13:50,504 | INFO     | this job has now completed (state=finished)
[2025-12-12 22:14:57] 2025-12-13 03:13:50,504 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-12 22:14:57] 2025-12-13 03:13:50,504 | INFO     | log transfer has been attempted: DONE
[2025-12-12 22:14:57] 2025-12-13 03:13:50,504 | INFO     | job 6928822778 has finished - writing final server update
[2025-12-12 22:14:57] 2025-12-13 03:13:50,504 | INFO     | total number of processed events: 400 (read)
[2025-12-12 22:14:57] 2025-12-13 03:13:50,505 | INFO     | executing command: lscpu
[2025-12-12 22:14:57] 2025-12-13 03:13:50,531 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-12 22:14:57] 2025-12-13 03:13:50,856 | INFO     | monitor loop #342: job 0:6928822778 is in state 'finished'
[2025-12-12 22:14:57] 2025-12-13 03:13:50,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-12 22:14:57] 2025-12-13 03:13:52,022 | INFO     | time since job start (4569s) is within the limit (174528.0s)
[2025-12-12 22:14:57] 2025-12-13 03:13:53,359 | INFO     | monitor loop #343: job 0:6928822778 is in state 'finished'
[2025-12-12 22:14:57] 2025-12-13 03:13:53,359 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-12 22:14:57] 2025-12-13 03:13:54,027 | INFO     | time since job start (4571s) is within the limit (174528.0s)
[2025-12-12 22:14:57] 2025-12-13 03:13:55,147 | INFO     | PID=17910 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-12 22:14:57] 2025-12-13 03:13:55,862 | INFO     | monitor loop #344: job 0:6928822778 is in state 'finished'
[2025-12-12 22:14:57] 2025-12-13 03:13:55,862 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-12 22:14:57] 2025-12-13 03:13:56,148 | INFO     | time since job start (4573s) is within the limit (174528.0s)
[2025-12-12 22:14:57] 2025-12-13 03:13:56,526 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-12 22:14:57] 2025-12-13 03:13:56,529 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-12-12 22:14:57] 2025-12-13 03:13:56,531 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6928822778/memory_monitor_summary.json (trf name=prmon)
[2025-12-12 22:14:57] 2025-12-13 03:13:56,532 | INFO     | extracted standard info from prmon json
[2025-12-12 22:14:57] 2025-12-13 03:13:56,533 | INFO     | extracted standard memory fields from prmon json
[2025-12-12 22:14:57] 2025-12-13 03:13:56,533 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-12 22:14:57] 2025-12-13 03:13:56,533 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-12 22:14:57] 2025-12-13 03:13:56,533 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-12 22:14:57] 2025-12-13 03:13:56,536 | INFO     | fitting pss+swap vs Time
[2025-12-12 22:14:57] 2025-12-13 03:13:56,536 | INFO     | sum of square deviations: 97479037.0
[2025-12-12 22:14:57] 2025-12-13 03:13:56,537 | INFO     | sum of deviations: -5961947240.0
[2025-12-12 22:14:57] 2025-12-13 03:13:56,537 | INFO     | mean x: 1765593440.5
[2025-12-12 22:14:57] 2025-12-13 03:13:56,537 | INFO     | mean y: 2717787.411764706
[2025-12-12 22:14:57] 2025-12-13 03:13:56,537 | INFO     | intersect: 107988755232.0685
[2025-12-12 22:14:57] 2025-12-13 03:13:56,537 | INFO     | chi2: 0.05458550730296468
[2025-12-12 22:14:57] 2025-12-13 03:13:56,538 | INFO     | current memory leak: -61.16 B/s (using 68 data points, chi2=0.05)
[2025-12-12 22:14:57] 2025-12-13 03:13:56,538 | INFO     | could have reported an average CPU frequency of 2045 MHz (6 samples)
[2025-12-12 22:14:57] 2025-12-13 03:13:56,538 | INFO     | ..............................
[2025-12-12 22:14:57] 2025-12-13 03:13:56,539 | INFO     | . Timing measurements:
[2025-12-12 22:14:57] 2025-12-13 03:13:56,539 | INFO     | . get job = 0 s
[2025-12-12 22:14:57] 2025-12-13 03:13:56,539 | INFO     | . initial setup = 2 s
[2025-12-12 22:14:57] 2025-12-13 03:13:56,539 | INFO     | . payload setup = 7 s
[2025-12-12 22:14:57] 2025-12-13 03:13:56,539 | INFO     | . stage-in = 0 s
[2025-12-12 22:14:57] 2025-12-13 03:13:56,539 | INFO     | . payload execution = 4538 s
[2025-12-12 22:14:57] 2025-12-13 03:13:56,539 | INFO     | . stage-out = 0 s
[2025-12-12 22:14:57] 2025-12-13 03:13:56,540 | INFO     | . log creation = 0 s
[2025-12-12 22:14:57] 2025-12-13 03:13:56,540 | INFO     | ..............................
[2025-12-12 22:14:57] 2025-12-13 03:13:56,618 | INFO     | 
[2025-12-12 22:14:57] 2025-12-13 03:13:56,618 | INFO     | job summary report
[2025-12-12 22:14:57] 2025-12-13 03:13:56,619 | INFO     | --------------------------------------------------
[2025-12-12 22:14:57] 2025-12-13 03:13:56,619 | INFO     | PanDA job id: 6928822778
[2025-12-12 22:14:57] 2025-12-13 03:13:56,619 | INFO     | task id: 47886831
[2025-12-12 22:14:57] 2025-12-13 03:13:56,619 | INFO     | errors: (none)
[2025-12-12 22:14:57] 2025-12-13 03:13:56,619 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-12 22:14:57] 2025-12-13 03:13:56,619 | INFO     | pilot state: finished 
[2025-12-12 22:14:57] 2025-12-13 03:13:56,620 | INFO     | transexitcode: 0
[2025-12-12 22:14:57] 2025-12-13 03:13:56,620 | INFO     | exeerrorcode: 0
[2025-12-12 22:14:57] 2025-12-13 03:13:56,620 | INFO     | exeerrordiag: 
[2025-12-12 22:14:57] 2025-12-13 03:13:56,620 | INFO     | exitcode: 0
[2025-12-12 22:14:57] 2025-12-13 03:13:56,620 | INFO     | exitmsg: OK
[2025-12-12 22:14:57] 2025-12-13 03:13:56,620 | INFO     | cpuconsumptiontime: 48955 s
[2025-12-12 22:14:57] 2025-12-13 03:13:56,620 | INFO     | nevents: 400
[2025-12-12 22:14:57] 2025-12-13 03:13:56,621 | INFO     | neventsw: 0
[2025-12-12 22:14:57] 2025-12-13 03:13:56,621 | INFO     | pid: 24334
[2025-12-12 22:14:57] 2025-12-13 03:13:56,621 | INFO     | pgrp: 24334
[2025-12-12 22:14:57] 2025-12-13 03:13:56,621 | INFO     | corecount: 12
[2025-12-12 22:14:57] 2025-12-13 03:13:56,621 | INFO     | event service: False
[2025-12-12 22:14:57] 2025-12-13 03:13:56,621 | INFO     | sizes: {0: 2283986, 5: 2284248, 11: 2284304, 4549: 2310397, 4550: 2319451, 4557: 2319589}
[2025-12-12 22:14:57] 2025-12-13 03:13:56,622 | INFO     | --------------------------------------------------
[2025-12-12 22:14:57] 2025-12-13 03:13:56,622 | INFO     | 
[2025-12-12 22:14:57] 2025-12-13 03:13:56,622 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-12 22:14:57] 2025-12-13 03:13:56,645 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-12 22:14:57] 2025-12-13 03:13:56,645 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-12 22:14:57] 2025-12-13 03:13:56,646 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-12 22:14:57] 2025-12-13 03:13:56,646 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-12 22:14:57] 2025-12-13 03:13:56,646 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-12 22:14:57] 2025-12-13 03:13:56,646 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-12 22:14:57] 2025-12-13 03:13:56,646 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-12 22:14:57] 2025-12-13 03:13:56,647 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-12 22:14:57] 2025-12-13 03:13:56,647 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-12 22:14:57] 2025-12-13 03:13:56,647 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-12 22:14:57] 2025-12-13 03:13:56,647 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-12 22:14:57] 2025-12-13 03:13:56,647 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-12 22:14:57] 2025-12-13 03:13:56,647 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-12 22:14:57] 2025-12-13 03:13:56,648 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-12 22:14:57] 2025-12-13 03:13:56,648 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-12 22:14:57] 2025-12-13 03:13:56,648 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-12 22:14:57] 2025-12-13 03:13:56,648 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-12 22:14:57] 2025-12-13 03:13:56,648 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-12 22:14:57] 2025-12-13 03:13:56,648 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-12 22:14:57] 2025-12-13 03:13:56,649 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-12 22:14:57] 2025-12-13 03:13:56,649 | INFO     | job 6928822778 has completed (purged errors)
[2025-12-12 22:14:57] 2025-12-13 03:13:56,649 | INFO     | overall cleanup function is called
[2025-12-12 22:14:57] 2025-12-13 03:13:57,657 | INFO     | --- collectZombieJob: --- 10, [24334]
[2025-12-12 22:14:57] 2025-12-13 03:13:57,657 | INFO     | zombie collector waiting for pid 24334
[2025-12-12 22:14:57] 2025-12-13 03:13:57,657 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-12 22:14:57] 2025-12-13 03:13:57,657 | INFO     | collected zombie processes
[2025-12-12 22:14:57] 2025-12-13 03:13:57,657 | INFO     | will attempt to kill all subprocesses of pid=24334
[2025-12-12 22:14:57] 2025-12-13 03:13:57,747 | INFO     | process IDs to be killed: [24334] (in reverse order)
[2025-12-12 22:14:57] 2025-12-13 03:13:57,796 | WARNING  | found no corresponding commands to process id(s)
[2025-12-12 22:14:57] 2025-12-13 03:13:57,796 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-12 22:14:57] 2025-12-13 03:13:57,800 | INFO     | did not find any defunct processes belonging to 24334
[2025-12-12 22:14:57] 2025-12-13 03:13:57,802 | INFO     | did not find any defunct processes belonging to 24334
[2025-12-12 22:14:57] 2025-12-13 03:13:57,802 | INFO     | ready for new job
[2025-12-12 22:14:57] 2025-12-13 03:13:57,802 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-12 22:14:57] 2025-12-13 03:13:57,803 | INFO     | ***************************************
[2025-12-12 22:14:57] 2025-12-13 03:13:57,804 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-12 22:14:57] 2025-12-13 03:13:57,804 | INFO     | ***************************************
[2025-12-12 22:14:57] 2025-12-13 03:13:57,804 | INFO     | 
[2025-12-12 22:14:57] 2025-12-13 03:13:57,804 | INFO     | architecture information:
[2025-12-12 22:14:57] 2025-12-13 03:13:57,805 | INFO     | executing command: cat /etc/os-release
[2025-12-12 22:14:57] 2025-12-13 03:13:57,819 | INFO     | cat /etc/os-release:
[2025-12-12 22:14:57] NAME="CentOS Linux"
[2025-12-12 22:14:57] VERSION="7 (Core)"
[2025-12-12 22:14:57] ID="centos"
[2025-12-12 22:14:57] ID_LIKE="rhel fedora"
[2025-12-12 22:14:57] VERSION_ID="7"
[2025-12-12 22:14:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-12 22:14:57] ANSI_COLOR="0;31"
[2025-12-12 22:14:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-12 22:14:57] HOME_URL="https://www.centos.org/"
[2025-12-12 22:14:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-12 22:14:57] 
[2025-12-12 22:14:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-12 22:14:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-12 22:14:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-12 22:14:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-12 22:14:57] 
[2025-12-12 22:14:57] 2025-12-13 03:13:57,819 | INFO     | ***************************************
[2025-12-12 22:14:57] 2025-12-13 03:13:58,323 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-12 22:14:57] 2025-12-13 03:13:58,341 | INFO     | sufficient remaining disk space (29519511552 B)
[2025-12-12 22:14:57] 2025-12-13 03:13:58,341 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-12 22:14:57] 2025-12-13 03:13:58,342 | INFO     | current server update state: UPDATING_FINAL
[2025-12-12 22:14:57] 2025-12-13 03:13:58,342 | INFO     | update_server=False
[2025-12-12 22:14:57] 2025-12-13 03:13:58,342 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-12 22:14:57] 2025-12-13 03:13:58,342 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-12 22:14:57] 2025-12-13 03:13:58,343 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-12 22:14:57] 2025-12-13 03:13:58,365 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-12 22:14:57] 2025-12-13 03:13:58,365 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-12 22:14:57] 2025-12-13 03:13:58,365 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-12 22:14:57] 2025-12-13 03:13:58,366 | INFO     | will abort loop
[2025-12-12 22:14:57] 2025-12-13 03:13:58,465 | INFO     | all payload control threads have been joined
[2025-12-12 22:14:57] 2025-12-13 03:13:58,551 | INFO     | all job control threads have been joined
[2025-12-12 22:14:57] 2025-12-13 03:13:59,000 | INFO     | all data control threads have been joined
[2025-12-12 22:14:57] 2025-12-13 03:13:59,348 | INFO     | [job] retrieve thread has finished
[2025-12-12 22:14:57] 2025-12-13 03:13:59,348 | INFO     | [job] queue monitor thread has finished
[2025-12-12 22:14:57] 2025-12-13 03:13:59,371 | INFO     | [job] job monitor thread has finished
[2025-12-12 22:14:57] 2025-12-13 03:13:59,438 | INFO     | [data] copytool_in thread has finished
[2025-12-12 22:14:57] 2025-12-13 03:13:59,470 | INFO     | [payload] control thread has finished
[2025-12-12 22:14:57] 2025-12-13 03:13:59,557 | INFO     | [job] control thread has finished
[2025-12-12 22:14:57] 2025-12-13 03:13:59,568 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-12 22:14:57] 2025-12-13 03:13:59,965 | INFO     | [payload] failed_post thread has finished
[2025-12-12 22:14:57] 2025-12-13 03:14:00,005 | INFO     | [data] control thread has finished
[2025-12-12 22:14:57] 2025-12-13 03:14:00,007 | INFO     | [payload] execute_payloads thread has finished
[2025-12-12 22:14:57] 2025-12-13 03:14:00,258 | INFO     | [job] validate thread has finished
[2025-12-12 22:14:57] 2025-12-13 03:14:00,348 | INFO     | [data] copytool_out thread has finished
[2025-12-12 22:14:57] 2025-12-13 03:14:00,450 | INFO     | [job] create_data_payload thread has finished
[2025-12-12 22:14:57] 2025-12-13 03:14:00,463 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-12 22:14:57] 2025-12-13 03:14:00,589 | INFO     | [payload] validate_pre thread has finished
[2025-12-12 22:14:57] 2025-12-13 03:14:00,797 | INFO     | [payload] validate_post thread has finished
[2025-12-12 22:14:57] 2025-12-13 03:14:04,469 | INFO     | [data] queue_monitor thread has finished
[2025-12-12 22:14:57] 2025-12-13 03:14:29,410 | INFO     | PID=17910 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-12 22:14:57] 2025-12-13 03:14:29,410 | INFO     | found 0 job(s) in 20 queues
[2025-12-12 22:14:57] 2025-12-13 03:14:29,411 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-12 22:14:57] 2025-12-13 03:14:29,411 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-12 22:14:57] 2025-12-13 03:14:49,938 | INFO     | [monitor] cgroup control has ended
[2025-12-12 22:14:57] 2025-12-13 03:14:51,890 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139767706154816)>', '<ExcThread(monitor, started 139766808958720)>']
[2025-12-12 22:14:57] 2025-12-13 03:14:52,524 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-12 22:14:57] 2025-12-13 03:14:52,524 | INFO     | [monitor] control thread has ended
[2025-12-12 22:14:57] 2025-12-13 03:14:56,916 | INFO     | all workflow threads have been joined
[2025-12-12 22:14:57] 2025-12-13 03:14:56,916 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-12 22:14:57] 2025-12-13 03:14:56,917 | INFO     | traces error code: 0
[2025-12-12 22:14:57] 2025-12-13 03:14:56,917 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-12 22:14:57] 2025-12-13 03:14:57,033 [wrapper] ==== pilot stdout END ====
[2025-12-12 22:14:57] 2025-12-13 03:14:57,037 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-12 22:14:57] 2025-12-13 03:14:57,041 [wrapper] pilotpid: 17910
[2025-12-12 22:14:57] 2025-12-13 03:14:57,045 [wrapper] Pilot exit status: 0
[2025-12-12 22:14:57] 2025-12-13 03:14:57,061 [wrapper] pandaids: 6928822778
[2025-12-12 22:14:57] 2025-12-13 03:14:57,118 [wrapper] cleanup supervisor_pilot 20846 17911
[2025-12-12 22:14:57] 2025-12-13 03:14:57,122 [wrapper] Test setup, not cleaning
[2025-12-12 22:14:57] 2025-12-13 03:14:57,126 [wrapper] apfmon messages muted
[2025-12-12 22:14:57] 2025-12-13 03:14:57,130 [wrapper] ==== wrapper stdout END ====
[2025-12-12 22:14:57] 2025-12-13 03:14:57,134 [wrapper] ==== wrapper stderr END ====
[2025-12-12 22:14:57]  *** Error codes and diagnostics ***
[2025-12-12 22:14:57]     "exeErrorCode": 0,
[2025-12-12 22:14:57]     "exeErrorDiag": "",
[2025-12-12 22:14:57]     "pilotErrorCode": 0,
[2025-12-12 22:14:57]     "pilotErrorDiag": "",
[2025-12-12 22:14:57]  *** Listing of results directory ***
[2025-12-12 22:14:57] total 339504
[2025-12-12 22:14:57] -rw-r--r-- 1 boincer umatlas    579449 Dec 12 20:46 pilot3.tar.gz
[2025-12-12 22:14:57] -rw-r--r-- 1 boincer umatlas      5112 Dec 12 20:50 queuedata.json
[2025-12-12 22:14:57] -rwx------ 1 boincer umatlas     36322 Dec 12 20:50 runpilot2-wrapper.sh
[2025-12-12 22:14:57] -rw-r--r-- 1 boincer umatlas       100 Dec 12 20:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-12 22:14:57] -rwxr-xr-x 1 boincer umatlas      7986 Dec 12 20:57 run_atlas
[2025-12-12 22:14:57] -rw-r--r-- 1 boincer umatlas       105 Dec 12 20:57 job.xml
[2025-12-12 22:14:57] -rw-r--r-- 2 boincer umatlas 192818757 Dec 12 20:57 EVNT.47886829._000054.pool.root.1
[2025-12-12 22:14:57] -rw-r--r-- 2 boincer umatlas     15847 Dec 12 20:57 start_atlas.sh
[2025-12-12 22:14:57] drwxrwx--x 2 boincer umatlas      4096 Dec 12 20:57 shared
[2025-12-12 22:14:57] -rw-r--r-- 2 boincer umatlas    592408 Dec 12 20:57 input.tar.gz
[2025-12-12 22:14:57] -rw-r--r-- 1 boincer umatlas         0 Dec 12 20:57 boinc_lockfile
[2025-12-12 22:14:57] -rw-r--r-- 1 boincer umatlas      2535 Dec 12 20:57 pandaJob.out
[2025-12-12 22:14:57] -rw------- 1 boincer umatlas        57 Dec 12 20:57 setup.sh.local
[2025-12-12 22:14:57] -rw------- 1 boincer umatlas    991720 Dec 12 20:57 agis_schedconf.cvmfs.json
[2025-12-12 22:14:57] -rw------- 1 boincer umatlas   1516240 Dec 12 20:57 agis_ddmendpoints.agis.ALL.json
[2025-12-12 22:14:57] drwx------ 5 boincer umatlas      4096 Dec 12 20:57 pilot3
[2025-12-12 22:14:57] -rw-r--r-- 1 boincer umatlas      5951 Dec 12 22:12 init_data.xml
[2025-12-12 22:14:57] -rw------- 1 boincer umatlas 148831636 Dec 12 22:13 HITS.47886831._001336.pool.root.1
[2025-12-12 22:14:57] -rw-r--r-- 1 boincer umatlas       530 Dec 12 22:13 boinc_task_state.xml
[2025-12-12 22:14:57] -rw------- 1 boincer umatlas        95 Dec 12 22:13 pilot_heartbeat.json
[2025-12-12 22:14:57] -rw------- 1 boincer umatlas      1046 Dec 12 22:13 memory_monitor_summary.json
[2025-12-12 22:14:57] -rw------- 1 boincer umatlas    380228 Dec 12 22:13 log.47886831._001336.job.log.tgz.1
[2025-12-12 22:14:57] -rw------- 1 boincer umatlas      7846 Dec 12 22:13 heartbeat.json
[2025-12-12 22:14:57] -rw-r--r-- 1 boincer umatlas      8192 Dec 12 22:14 boinc_mmap_file
[2025-12-12 22:14:57] -rw-r--r-- 1 boincer umatlas        27 Dec 12 22:14 wrapper_checkpoint.txt
[2025-12-12 22:14:57] -rw------- 1 boincer umatlas      4932 Dec 12 22:14 pilotlog.txt
[2025-12-12 22:14:57] -rw------- 1 boincer umatlas    662407 Dec 12 22:14 log.47886831._001336.job.log.1
[2025-12-12 22:14:57] -rw------- 1 boincer umatlas       357 Dec 12 22:14 output.list
[2025-12-12 22:14:57] -rw-r--r-- 1 boincer umatlas       620 Dec 12 22:14 runtime_log
[2025-12-12 22:14:57] -rw------- 1 boincer umatlas   1064960 Dec 12 22:14 result.tar.gz
[2025-12-12 22:14:57] -rw-r--r-- 1 boincer umatlas      9339 Dec 12 22:14 runtime_log.err
[2025-12-12 22:14:57] -rw------- 1 boincer umatlas       658 Dec 12 22:14 er6KDmYxTo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPYNKDmqNPDNm.diag
[2025-12-12 22:14:57] -rw-r--r-- 1 boincer umatlas     22046 Dec 12 22:14 stderr.txt
[2025-12-12 22:14:57] HITS file was successfully produced:
[2025-12-12 22:14:57] -rw------- 1 boincer umatlas 148831636 Dec 12 22:13 shared/HITS.pool.root.1
[2025-12-12 22:14:57]  *** Contents of shared directory: ***
[2025-12-12 22:14:57] total 335284
[2025-12-12 22:14:57] -rw-r--r-- 2 boincer umatlas 192818757 Dec 12 20:57 ATLAS.root_0
[2025-12-12 22:14:57] -rw-r--r-- 2 boincer umatlas     15847 Dec 12 20:57 start_atlas.sh
[2025-12-12 22:14:57] -rw-r--r-- 2 boincer umatlas    592408 Dec 12 20:57 input.tar.gz
[2025-12-12 22:14:57] -rw------- 1 boincer umatlas 148831636 Dec 12 22:13 HITS.pool.root.1
[2025-12-12 22:14:57] -rw------- 1 boincer umatlas   1064960 Dec 12 22:14 result.tar.gz
22:14:59 (13844): run_atlas exited; CPU time 48944.497039
22:14:59 (13844): called boinc_finish(0)

</stderr_txt>
]]>

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