Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:54:55 (7162): wrapper (7.7.26015): starting
20:54:55 (7162): wrapper: running run_atlas (--nthreads 8)
[2025-12-12 20:54:55] Arguments: --nthreads 8
[2025-12-12 20:54:55] Threads: 8
[2025-12-12 20:54:55] Checking for CVMFS
[2025-12-12 20:54:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-12 20:54:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-12 20:54:56] Running cvmfs_config stat atlas.cern.ch
[2025-12-12 20:54:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-12 20:54:56] 2.11.2.0 31887 30234 99476 153943 3 1 14471136 20275201 1 130560 0 7775324 99.862 2081499 36131 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-12 20:54:56] CVMFS is ok
[2025-12-12 20:54:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-12 20:54:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-12 20:54:56] Further information can be found at the LHC@home message board.
[2025-12-12 20:54:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-12 20:54:56] Checking for apptainer binary...
[2025-12-12 20:54:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-12 20:54:56] Running /usr/bin/apptainer --version
[2025-12-12 20:54:56] apptainer version 1.3.2-1.el7
[2025-12-12 20:54:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-12 20:54:58] c-204-12.aglt2.org
[2025-12-12 20:54:58] apptainer works
[2025-12-12 20:54:58] Set ATHENA_PROC_NUMBER=8
[2025-12-12 20:54:58] Set ATHENA_CORE_NUMBER=8
[2025-12-12 20:54:58] Starting ATLAS job with PandaID=6928822456
[2025-12-12 20:54:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-12 23:14:50]  *** The last 200 lines of the pilot log: ***
[2025-12-12 23:14:50] 2025-12-13 04:14:10,577 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-12 23:14:50] 2025-12-13 04:14:10,902 | INFO     | time since job start (8334s) is within the limit (174528.0s)
[2025-12-12 23:14:50] 2025-12-13 04:14:12,908 | INFO     | time since job start (8336s) is within the limit (174528.0s)
[2025-12-12 23:14:50] 2025-12-13 04:14:13,080 | INFO     | monitor loop #614: job 0:6928822456 is in state 'finished'
[2025-12-12 23:14:50] 2025-12-13 04:14:13,088 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-12 23:14:50] 2025-12-13 04:14:14,913 | INFO     | time since job start (8338s) is within the limit (174528.0s)
[2025-12-12 23:14:50] 2025-12-13 04:14:15,591 | INFO     | monitor loop #615: job 0:6928822456 is in state 'finished'
[2025-12-12 23:14:50] 2025-12-13 04:14:15,591 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-12 23:14:50] 2025-12-13 04:14:16,920 | INFO     | time since job start (8340s) is within the limit (174528.0s)
[2025-12-12 23:14:50] 2025-12-13 04:14:17,506 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-12 23:14:50] 2025-12-13 04:14:17,509 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-12-12 23:14:50] 2025-12-13 04:14:17,511 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6928822456/memory_monitor_summary.json (trf name=prmon)
[2025-12-12 23:14:50] 2025-12-13 04:14:17,512 | INFO     | extracted standard info from prmon json
[2025-12-12 23:14:50] 2025-12-13 04:14:17,512 | INFO     | extracted standard memory fields from prmon json
[2025-12-12 23:14:50] 2025-12-13 04:14:17,513 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-12 23:14:50] 2025-12-13 04:14:17,513 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-12 23:14:50] 2025-12-13 04:14:17,513 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-12 23:14:50] 2025-12-13 04:14:17,517 | INFO     | fitting pss+swap vs Time
[2025-12-12 23:14:50] 2025-12-13 04:14:17,517 | INFO     | sum of square deviations: 779958810.0
[2025-12-12 23:14:50] 2025-12-13 04:14:17,518 | INFO     | sum of deviations: 9852536725.5
[2025-12-12 23:14:50] 2025-12-13 04:14:17,518 | INFO     | mean x: 1765595066.5
[2025-12-12 23:14:50] 2025-12-13 04:14:17,518 | INFO     | mean y: 2478994.375
[2025-12-12 23:14:50] 2025-12-13 04:14:17,518 | INFO     | intersect: -22300737549.91003
[2025-12-12 23:14:50] 2025-12-13 04:14:17,519 | INFO     | chi2: 1.4752843742087942
[2025-12-12 23:14:50] 2025-12-13 04:14:17,519 | INFO     | sum of square deviations: 697054930.0
[2025-12-12 23:14:50] 2025-12-13 04:14:17,520 | INFO     | sum of deviations: 9509810879.000006
[2025-12-12 23:14:50] 2025-12-13 04:14:17,520 | INFO     | mean x: 1765594914.0
[2025-12-12 23:14:50] 2025-12-13 04:14:17,520 | INFO     | mean y: 2478363.900763359
[2025-12-12 23:14:50] 2025-12-13 04:14:17,520 | INFO     | intersect: -24085255612.90976
[2025-12-12 23:14:50] 2025-12-13 04:14:17,520 | INFO     | chi2: 1.4772213615077907
[2025-12-12 23:14:50] 2025-12-13 04:14:17,520 | INFO     | current chi2=1.4772213615077907 (change=-0.1312958594871118 %)
[2025-12-12 23:14:50] 2025-12-13 04:14:17,521 | INFO     | right removable region: 130
[2025-12-12 23:14:50] 2025-12-13 04:14:17,521 | INFO     | sum of square deviations: 697054930.0
[2025-12-12 23:14:50] 2025-12-13 04:14:17,521 | INFO     | sum of deviations: -8957998718.0
[2025-12-12 23:14:50] 2025-12-13 04:14:17,522 | INFO     | mean x: 1765595219.0
[2025-12-12 23:14:50] 2025-12-13 04:14:17,522 | INFO     | mean y: 2512965.0229007634
[2025-12-12 23:14:50] 2025-12-13 04:14:17,522 | INFO     | intersect: 22692546458.23545
[2025-12-12 23:14:50] 2025-12-13 04:14:17,522 | INFO     | chi2: 0.11187692318144568
[2025-12-12 23:14:50] 2025-12-13 04:14:17,522 | INFO     | current chi2=0.11187692318144568 (change=92.41658590456868 %)
[2025-12-12 23:14:50] 2025-12-13 04:14:17,522 | INFO     | sum of square deviations: 620244187.5
[2025-12-12 23:14:50] 2025-12-13 04:14:17,523 | INFO     | sum of deviations: -8523046086.999998
[2025-12-12 23:14:50] 2025-12-13 04:14:17,523 | INFO     | mean x: 1765595371.5
[2025-12-12 23:14:50] 2025-12-13 04:14:17,523 | INFO     | mean y: 2511994.492063492
[2025-12-12 23:14:50] 2025-12-13 04:14:17,523 | INFO     | intersect: 24264328591.18267
[2025-12-12 23:14:50] 2025-12-13 04:14:17,524 | INFO     | chi2: 0.09555074971107952
[2025-12-12 23:14:50] 2025-12-13 04:14:17,524 | INFO     | current chi2=0.09555074971107952 (change=14.592976823189744 %)
[2025-12-12 23:14:50] 2025-12-13 04:14:17,524 | INFO     | left removable region: 20
[2025-12-12 23:14:50] 2025-12-13 04:14:17,524 | INFO     | sum of square deviations: 412686807.5
[2025-12-12 23:14:50] 2025-12-13 04:14:17,525 | INFO     | sum of deviations: 270023759.0000002
[2025-12-12 23:14:50] 2025-12-13 04:14:17,525 | INFO     | mean x: 1765595493.5
[2025-12-12 23:14:50] 2025-12-13 04:14:17,525 | INFO     | mean y: 2491887.4727272727
[2025-12-12 23:14:50] 2025-12-13 04:14:17,525 | INFO     | intersect: -1152749141.2299662
[2025-12-12 23:14:50] 2025-12-13 04:14:17,525 | INFO     | chi2: 0.02547240604656268
[2025-12-12 23:14:50] 2025-12-13 04:14:17,526 | INFO     | current memory leak: 0.65 B/s (using 110 data points, chi2=0.03)
[2025-12-12 23:14:50] 2025-12-13 04:14:17,526 | INFO     | could have reported an average CPU frequency of 2008 MHz (8 samples)
[2025-12-12 23:14:50] 2025-12-13 04:14:17,526 | INFO     | ..............................
[2025-12-12 23:14:50] 2025-12-13 04:14:17,526 | INFO     | . Timing measurements:
[2025-12-12 23:14:50] 2025-12-13 04:14:17,526 | INFO     | . get job = 0 s
[2025-12-12 23:14:50] 2025-12-13 04:14:17,526 | INFO     | . initial setup = 2 s
[2025-12-12 23:14:50] 2025-12-13 04:14:17,527 | INFO     | . payload setup = 8 s
[2025-12-12 23:14:50] 2025-12-13 04:14:17,527 | INFO     | . stage-in = 0 s
[2025-12-12 23:14:50] 2025-12-13 04:14:17,527 | INFO     | . payload execution = 8301 s
[2025-12-12 23:14:50] 2025-12-13 04:14:17,527 | INFO     | . stage-out = 0 s
[2025-12-12 23:14:50] 2025-12-13 04:14:17,527 | INFO     | . log creation = 0 s
[2025-12-12 23:14:50] 2025-12-13 04:14:17,527 | INFO     | ..............................
[2025-12-12 23:14:50] 2025-12-13 04:14:17,729 | INFO     | 
[2025-12-12 23:14:50] 2025-12-13 04:14:17,730 | INFO     | job summary report
[2025-12-12 23:14:50] 2025-12-13 04:14:17,730 | INFO     | --------------------------------------------------
[2025-12-12 23:14:50] 2025-12-13 04:14:17,730 | INFO     | PanDA job id: 6928822456
[2025-12-12 23:14:50] 2025-12-13 04:14:17,730 | INFO     | task id: 47886831
[2025-12-12 23:14:50] 2025-12-13 04:14:17,731 | INFO     | errors: (none)
[2025-12-12 23:14:50] 2025-12-13 04:14:17,731 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-12 23:14:50] 2025-12-13 04:14:17,731 | INFO     | pilot state: finished 
[2025-12-12 23:14:50] 2025-12-13 04:14:17,731 | INFO     | transexitcode: 0
[2025-12-12 23:14:50] 2025-12-13 04:14:17,731 | INFO     | exeerrorcode: 0
[2025-12-12 23:14:50] 2025-12-13 04:14:17,731 | INFO     | exeerrordiag: 
[2025-12-12 23:14:50] 2025-12-13 04:14:17,732 | INFO     | exitcode: 0
[2025-12-12 23:14:50] 2025-12-13 04:14:17,732 | INFO     | exitmsg: OK
[2025-12-12 23:14:50] 2025-12-13 04:14:17,732 | INFO     | cpuconsumptiontime: 61850 s
[2025-12-12 23:14:50] 2025-12-13 04:14:17,732 | INFO     | nevents: 400
[2025-12-12 23:14:50] 2025-12-13 04:14:17,732 | INFO     | neventsw: 0
[2025-12-12 23:14:50] 2025-12-13 04:14:17,732 | INFO     | pid: 17422
[2025-12-12 23:14:50] 2025-12-13 04:14:17,733 | INFO     | pgrp: 17422
[2025-12-12 23:14:50] 2025-12-13 04:14:17,733 | INFO     | corecount: 8
[2025-12-12 23:14:50] 2025-12-13 04:14:17,733 | INFO     | event service: False
[2025-12-12 23:14:50] 2025-12-13 04:14:17,733 | INFO     | sizes: {0: 2283986, 1: 2283986, 6: 2284276, 11: 2284304, 8313: 2312091, 8315: 2321089, 8316: 2321273, 8324: 2321467}
[2025-12-12 23:14:50] 2025-12-13 04:14:17,733 | INFO     | --------------------------------------------------
[2025-12-12 23:14:50] 2025-12-13 04:14:17,733 | INFO     | 
[2025-12-12 23:14:50] 2025-12-13 04:14:17,734 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-12 23:14:50] 2025-12-13 04:14:17,763 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-12 23:14:50] 2025-12-13 04:14:17,763 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-12 23:14:50] 2025-12-13 04:14:17,763 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-12 23:14:50] 2025-12-13 04:14:17,763 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-12 23:14:50] 2025-12-13 04:14:17,763 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-12 23:14:50] 2025-12-13 04:14:17,764 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-12 23:14:50] 2025-12-13 04:14:17,764 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-12 23:14:50] 2025-12-13 04:14:17,764 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-12 23:14:50] 2025-12-13 04:14:17,764 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-12 23:14:50] 2025-12-13 04:14:17,764 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-12 23:14:50] 2025-12-13 04:14:17,764 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-12 23:14:50] 2025-12-13 04:14:17,764 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-12 23:14:50] 2025-12-13 04:14:17,764 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-12 23:14:50] 2025-12-13 04:14:17,765 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-12 23:14:50] 2025-12-13 04:14:17,765 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-12 23:14:50] 2025-12-13 04:14:17,765 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-12 23:14:50] 2025-12-13 04:14:17,765 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-12 23:14:50] 2025-12-13 04:14:17,765 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-12 23:14:50] 2025-12-13 04:14:17,765 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-12 23:14:50] 2025-12-13 04:14:17,765 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-12 23:14:50] 2025-12-13 04:14:17,766 | INFO     | job 6928822456 has completed (purged errors)
[2025-12-12 23:14:50] 2025-12-13 04:14:17,766 | INFO     | overall cleanup function is called
[2025-12-12 23:14:50] 2025-12-13 04:14:18,773 | INFO     | --- collectZombieJob: --- 10, [17422]
[2025-12-12 23:14:50] 2025-12-13 04:14:18,773 | INFO     | zombie collector waiting for pid 17422
[2025-12-12 23:14:50] 2025-12-13 04:14:18,774 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-12 23:14:50] 2025-12-13 04:14:18,774 | INFO     | collected zombie processes
[2025-12-12 23:14:50] 2025-12-13 04:14:18,774 | INFO     | will attempt to kill all subprocesses of pid=17422
[2025-12-12 23:14:50] 2025-12-13 04:14:18,860 | INFO     | process IDs to be killed: [17422] (in reverse order)
[2025-12-12 23:14:50] 2025-12-13 04:14:18,915 | WARNING  | found no corresponding commands to process id(s)
[2025-12-12 23:14:50] 2025-12-13 04:14:18,916 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-12 23:14:50] 2025-12-13 04:14:18,919 | INFO     | did not find any defunct processes belonging to 17422
[2025-12-12 23:14:50] 2025-12-13 04:14:18,922 | INFO     | did not find any defunct processes belonging to 17422
[2025-12-12 23:14:50] 2025-12-13 04:14:18,922 | INFO     | ready for new job
[2025-12-12 23:14:50] 2025-12-13 04:14:18,923 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-12 23:14:50] 2025-12-13 04:14:18,924 | INFO     | ***************************************
[2025-12-12 23:14:50] 2025-12-13 04:14:18,925 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-12 23:14:50] 2025-12-13 04:14:18,925 | INFO     | ***************************************
[2025-12-12 23:14:50] 2025-12-13 04:14:18,925 | INFO     | 
[2025-12-12 23:14:50] 2025-12-13 04:14:18,925 | INFO     | architecture information:
[2025-12-12 23:14:50] 2025-12-13 04:14:18,926 | INFO     | executing command: cat /etc/os-release
[2025-12-12 23:14:50] 2025-12-13 04:14:18,943 | INFO     | cat /etc/os-release:
[2025-12-12 23:14:50] NAME="CentOS Linux"
[2025-12-12 23:14:50] VERSION="7 (Core)"
[2025-12-12 23:14:50] ID="centos"
[2025-12-12 23:14:50] ID_LIKE="rhel fedora"
[2025-12-12 23:14:50] VERSION_ID="7"
[2025-12-12 23:14:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-12 23:14:50] ANSI_COLOR="0;31"
[2025-12-12 23:14:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-12 23:14:50] HOME_URL="https://www.centos.org/"
[2025-12-12 23:14:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-12 23:14:50] 
[2025-12-12 23:14:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-12 23:14:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-12 23:14:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-12 23:14:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-12 23:14:50] 
[2025-12-12 23:14:50] 2025-12-13 04:14:18,943 | INFO     | ***************************************
[2025-12-12 23:14:50] 2025-12-13 04:14:19,446 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-12 23:14:50] 2025-12-13 04:14:19,465 | INFO     | sufficient remaining disk space (18674089984 B)
[2025-12-12 23:14:50] 2025-12-13 04:14:19,466 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-12 23:14:50] 2025-12-13 04:14:19,466 | INFO     | current server update state: UPDATING_FINAL
[2025-12-12 23:14:50] 2025-12-13 04:14:19,466 | INFO     | update_server=False
[2025-12-12 23:14:50] 2025-12-13 04:14:19,466 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-12 23:14:50] 2025-12-13 04:14:19,467 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-12 23:14:50] 2025-12-13 04:14:19,467 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-12 23:14:50] 2025-12-13 04:14:19,468 | INFO     | aborting loop
[2025-12-12 23:14:50] 2025-12-13 04:14:19,511 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-12 23:14:50] 2025-12-13 04:14:19,679 | INFO     | all job control threads have been joined
[2025-12-12 23:14:50] 2025-12-13 04:14:19,853 | INFO     | all payload control threads have been joined
[2025-12-12 23:14:50] 2025-12-13 04:14:19,910 | INFO     | all data control threads have been joined
[2025-12-12 23:14:50] 2025-12-13 04:14:20,463 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-12 23:14:50] 2025-12-13 04:14:20,472 | INFO     | [job] retrieve thread has finished
[2025-12-12 23:14:50] 2025-12-13 04:14:20,473 | INFO     | [job] queue monitor thread has finished
[2025-12-12 23:14:50] 2025-12-13 04:14:20,473 | INFO     | [job] job monitor thread has finished
[2025-12-12 23:14:50] 2025-12-13 04:14:20,684 | INFO     | [job] control thread has finished
[2025-12-12 23:14:50] 2025-12-13 04:14:20,859 | INFO     | [payload] control thread has finished
[2025-12-12 23:14:50] 2025-12-13 04:14:20,915 | INFO     | [data] control thread has finished
[2025-12-12 23:14:50] 2025-12-13 04:14:20,931 | INFO     | [data] copytool_in thread has finished
[2025-12-12 23:14:50] 2025-12-13 04:14:20,934 | INFO     | [payload] validate_pre thread has finished
[2025-12-12 23:14:50] 2025-12-13 04:14:21,039 | INFO     | [payload] validate_post thread has finished
[2025-12-12 23:14:50] 2025-12-13 04:14:21,245 | INFO     | [payload] failed_post thread has finished
[2025-12-12 23:14:50] 2025-12-13 04:14:21,517 | INFO     | [data] copytool_out thread has finished
[2025-12-12 23:14:50] 2025-12-13 04:14:21,636 | INFO     | [payload] execute_payloads thread has finished
[2025-12-12 23:14:50] 2025-12-13 04:14:21,725 | INFO     | [job] validate thread has finished
[2025-12-12 23:14:50] 2025-12-13 04:14:21,837 | INFO     | [job] create_data_payload thread has finished
[2025-12-12 23:14:50] 2025-12-13 04:14:24,469 | INFO     | [data] queue_monitor thread has finished
[2025-12-12 23:14:50] 2025-12-13 04:14:29,602 | INFO     | job.realtimelogging is not enabled
[2025-12-12 23:14:50] 2025-12-13 04:14:29,673 | INFO     | [monitor] cgroup control has ended
[2025-12-12 23:14:50] 2025-12-13 04:14:30,604 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-12 23:14:50] 2025-12-13 04:14:32,556 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140454798436160)>', '<ExcThread(monitor, started 140454087620352)>']
[2025-12-12 23:14:50] 2025-12-13 04:14:37,582 | INFO     | all workflow threads have been joined
[2025-12-12 23:14:50] 2025-12-13 04:14:37,582 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-12 23:14:50] 2025-12-13 04:14:37,582 | INFO     | traces error code: 0
[2025-12-12 23:14:50] 2025-12-13 04:14:37,583 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-12 23:14:50] 2025-12-13 04:14:50,194 | INFO     | PID=10969 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-12 23:14:50] 2025-12-13 04:14:50,195 | INFO     | found 0 job(s) in 20 queues
[2025-12-12 23:14:50] 2025-12-13 04:14:50,195 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-12 23:14:50] 2025-12-13 04:14:50,195 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-12 23:14:50] 2025-12-13 04:14:50,195 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-12 23:14:50] 2025-12-13 04:14:50,195 | INFO     | [monitor] control thread has ended
[2025-12-12 23:14:50] 2025-12-13 04:14:50,361 [wrapper] ==== pilot stdout END ====
[2025-12-12 23:14:50] 2025-12-13 04:14:50,366 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-12 23:14:50] 2025-12-13 04:14:50,371 [wrapper] pilotpid: 10969
[2025-12-12 23:14:50] 2025-12-13 04:14:50,375 [wrapper] Pilot exit status: 0
[2025-12-12 23:14:50] 2025-12-13 04:14:50,392 [wrapper] pandaids: 6928822456
[2025-12-12 23:14:50] 2025-12-13 04:14:50,443 [wrapper] cleanup supervisor_pilot 18543 10970
[2025-12-12 23:14:50] 2025-12-13 04:14:50,448 [wrapper] Test setup, not cleaning
[2025-12-12 23:14:50] 2025-12-13 04:14:50,452 [wrapper] apfmon messages muted
[2025-12-12 23:14:50] 2025-12-13 04:14:50,456 [wrapper] ==== wrapper stdout END ====
[2025-12-12 23:14:50] 2025-12-13 04:14:50,460 [wrapper] ==== wrapper stderr END ====
[2025-12-12 23:14:50]  *** Error codes and diagnostics ***
[2025-12-12 23:14:50]     "exeErrorCode": 0,
[2025-12-12 23:14:50]     "exeErrorDiag": "",
[2025-12-12 23:14:50]     "pilotErrorCode": 0,
[2025-12-12 23:14:50]     "pilotErrorDiag": "",
[2025-12-12 23:14:50]  *** Listing of results directory ***
[2025-12-12 23:14:50] total 342072
[2025-12-12 23:14:50] -rw-r--r-- 1 boincer umatlas    579449 Dec 12 20:46 pilot3.tar.gz
[2025-12-12 23:14:50] -rw-r--r-- 1 boincer umatlas      5112 Dec 12 20:50 queuedata.json
[2025-12-12 23:14:50] -rwx------ 1 boincer umatlas     36322 Dec 12 20:50 runpilot2-wrapper.sh
[2025-12-12 23:14:50] -rw-r--r-- 1 boincer umatlas       100 Dec 12 20:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-12 23:14:50] -rwxr-xr-x 1 boincer umatlas      7986 Dec 12 20:54 run_atlas
[2025-12-12 23:14:50] -rw-r--r-- 1 boincer umatlas       105 Dec 12 20:54 job.xml
[2025-12-12 23:14:50] -rw-r--r-- 2 boincer umatlas 191530674 Dec 12 20:54 EVNT.47886829._000045.pool.root.1
[2025-12-12 23:14:50] -rw-r--r-- 2 boincer umatlas     15847 Dec 12 20:54 start_atlas.sh
[2025-12-12 23:14:50] drwxrwx--x 2 boincer umatlas      4096 Dec 12 20:54 shared
[2025-12-12 23:14:50] -rw-r--r-- 2 boincer umatlas    592408 Dec 12 20:54 input.tar.gz
[2025-12-12 23:14:50] -rw-r--r-- 1 boincer umatlas         0 Dec 12 20:54 boinc_lockfile
[2025-12-12 23:14:50] -rw-r--r-- 1 boincer umatlas      2535 Dec 12 20:54 pandaJob.out
[2025-12-12 23:14:50] -rw------- 1 boincer umatlas        57 Dec 12 20:54 setup.sh.local
[2025-12-12 23:14:50] -rw------- 1 boincer umatlas    991720 Dec 12 20:55 agis_schedconf.cvmfs.json
[2025-12-12 23:14:50] -rw------- 1 boincer umatlas   1516240 Dec 12 20:55 agis_ddmendpoints.agis.ALL.json
[2025-12-12 23:14:50] drwx------ 5 boincer umatlas      4096 Dec 12 20:55 pilot3
[2025-12-12 23:14:50] -rw-r--r-- 1 boincer umatlas      5910 Dec 12 23:12 init_data.xml
[2025-12-12 23:14:50] -rw------- 1 boincer umatlas 151764878 Dec 12 23:13 HITS.47886831._001105.pool.root.1
[2025-12-12 23:14:50] -rw-r--r-- 1 boincer umatlas       529 Dec 12 23:13 boinc_task_state.xml
[2025-12-12 23:14:50] -rw------- 1 boincer umatlas      1049 Dec 12 23:14 memory_monitor_summary.json
[2025-12-12 23:14:50] -rw------- 1 boincer umatlas    370114 Dec 12 23:14 log.47886831._001105.job.log.tgz.1
[2025-12-12 23:14:50] -rw------- 1 boincer umatlas        95 Dec 12 23:14 pilot_heartbeat.json
[2025-12-12 23:14:50] -rw------- 1 boincer umatlas      7841 Dec 12 23:14 heartbeat.json
[2025-12-12 23:14:50] -rw-r--r-- 1 boincer umatlas      8192 Dec 12 23:14 boinc_mmap_file
[2025-12-12 23:14:50] -rw-r--r-- 1 boincer umatlas        27 Dec 12 23:14 wrapper_checkpoint.txt
[2025-12-12 23:14:50] -rw------- 1 boincer umatlas       745 Dec 12 23:14 pilotlog.txt
[2025-12-12 23:14:50] -rw------- 1 boincer umatlas   1165751 Dec 12 23:14 log.47886831._001105.job.log.1
[2025-12-12 23:14:50] -rw------- 1 boincer umatlas       357 Dec 12 23:14 output.list
[2025-12-12 23:14:50] -rw-r--r-- 1 boincer umatlas       620 Dec 12 23:14 runtime_log
[2025-12-12 23:14:50] -rw------- 1 boincer umatlas   1556480 Dec 12 23:14 result.tar.gz
[2025-12-12 23:14:50] -rw-r--r-- 1 boincer umatlas      9342 Dec 12 23:14 runtime_log.err
[2025-12-12 23:14:50] -rw------- 1 boincer umatlas       661 Dec 12 23:14 cHjNDmHxTo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpWNKDmfPS0kn.diag
[2025-12-12 23:14:50] -rw-r--r-- 1 boincer umatlas     21275 Dec 12 23:14 stderr.txt
[2025-12-12 23:14:50] HITS file was successfully produced:
[2025-12-12 23:14:50] -rw------- 1 boincer umatlas 151764878 Dec 12 23:13 shared/HITS.pool.root.1
[2025-12-12 23:14:50]  *** Contents of shared directory: ***
[2025-12-12 23:14:50] total 337372
[2025-12-12 23:14:50] -rw-r--r-- 2 boincer umatlas 191530674 Dec 12 20:54 ATLAS.root_0
[2025-12-12 23:14:50] -rw-r--r-- 2 boincer umatlas     15847 Dec 12 20:54 start_atlas.sh
[2025-12-12 23:14:50] -rw-r--r-- 2 boincer umatlas    592408 Dec 12 20:54 input.tar.gz
[2025-12-12 23:14:50] -rw------- 1 boincer umatlas 151764878 Dec 12 23:13 HITS.pool.root.1
[2025-12-12 23:14:50] -rw------- 1 boincer umatlas   1556480 Dec 12 23:14 result.tar.gz
23:14:51 (7162): run_atlas exited; CPU time 61808.729225
23:14:51 (7162): called boinc_finish(0)

</stderr_txt>
]]>

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