Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:04 (106369): wrapper (7.7.26015): starting
00:00:04 (106369): wrapper: running run_atlas (--nthreads 9)
[2025-12-13 00:00:04] Arguments: --nthreads 9
[2025-12-13 00:00:04] Threads: 9
[2025-12-13 00:00:04] Checking for CVMFS
[2025-12-13 00:00:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 00:00:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 00:00:06] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 00:00:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 00:00:08] 2.13.3.0 11561 52385 324420 153948 2 117 18840119 32935937 23533 16776704 0 252864414 99.730 170290973 32412 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-13 00:00:08] CVMFS is ok
[2025-12-13 00:00:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 00:00:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 00:00:08] Further information can be found at the LHC@home message board.
[2025-12-13 00:00:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 00:00:08] Checking for apptainer binary...
[2025-12-13 00:00:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 00:00:08] Running /usr/bin/apptainer --version
[2025-12-13 00:00:08] apptainer version 1.4.4-1.el9
[2025-12-13 00:00:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 00:00:10] c-8-14.aglt2.org
[2025-12-13 00:00:10] apptainer works
[2025-12-13 00:00:10] Set ATHENA_PROC_NUMBER=9
[2025-12-13 00:00:10] Set ATHENA_CORE_NUMBER=9
[2025-12-13 00:00:11] Starting ATLAS job with PandaID=6928821852
[2025-12-13 00:00:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:00:19 (2294411): wrapper (7.7.26015): starting
07:00:19 (2294411): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 07:00:19] Arguments: --nthreads 8
[2025-12-13 07:00:19] Threads: 8
[2025-12-13 07:00:19] This job has been restarted, cleaning up previous attempt
[2025-12-13 07:00:19] Checking for CVMFS
[2025-12-13 07:00:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 07:00:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 07:00:21] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 07:00:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 07:00:23] 2.13.3.0 11561 52805 340140 153959 3 608 30912472 32935937 22741 16776704 0 255172560 99.728 173028062 32349 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-13 07:00:23] CVMFS is ok
[2025-12-13 07:00:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 07:00:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 07:00:23] Further information can be found at the LHC@home message board.
[2025-12-13 07:00:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 07:00:23] Checking for apptainer binary...
[2025-12-13 07:00:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 07:00:23] Running /usr/bin/apptainer --version
[2025-12-13 07:00:24] apptainer version 1.4.5-2.el9
[2025-12-13 07:00:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 07:00:25] c-8-14.aglt2.org
[2025-12-13 07:00:25] apptainer works
[2025-12-13 07:00:25] Set ATHENA_PROC_NUMBER=8
[2025-12-13 07:00:25] Set ATHENA_CORE_NUMBER=8
[2025-12-13 07:00:25] Starting ATLAS job with PandaID=6928821852
[2025-12-13 07:00:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 20:40:58]  *** The last 200 lines of the pilot log: ***
[2025-12-13 20:40:58] 2025-12-14 00:53:26,757 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.157175
[2025-12-13 20:40:58] 2025-12-14 00:53:26,791 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6928821852/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 20:40:58] 2025-12-14 00:53:26,816 | INFO     | extracted standard info from prmon json
[2025-12-13 20:40:58] 2025-12-14 00:53:26,816 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 20:40:58] 2025-12-14 00:53:26,816 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 20:40:58] 2025-12-14 00:53:26,821 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 20:40:58] 2025-12-14 00:53:26,821 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 20:40:58] 2025-12-14 00:53:26,879 | INFO     | fitting pss+swap vs Time
[2025-12-13 20:40:58] 2025-12-14 00:53:26,881 | INFO     | sum of square deviations: 133992287036.80428
[2025-12-13 20:40:58] 2025-12-14 00:53:26,992 | INFO     | sum of deviations: 175891135467.65573
[2025-12-13 20:40:58] 2025-12-14 00:53:26,992 | INFO     | mean x: 1765650488.1216931
[2025-12-13 20:40:58] 2025-12-14 00:53:26,992 | INFO     | mean y: 2474543.6124338624
[2025-12-13 20:40:58] 2025-12-14 00:53:26,993 | INFO     | intersect: -2315287740.043801
[2025-12-13 20:40:58] 2025-12-14 00:53:26,994 | INFO     | chi2: 5.309391978906765
[2025-12-13 20:40:58] 2025-12-14 00:53:27,012 | INFO     | sum of square deviations: 131351757501.09158
[2025-12-13 20:40:58] 2025-12-14 00:53:27,091 | INFO     | sum of deviations: 314294152807.3411
[2025-12-13 20:40:58] 2025-12-14 00:53:27,091 | INFO     | mean x: 1765650335.6298268
[2025-12-13 20:40:58] 2025-12-14 00:53:27,092 | INFO     | mean y: 2482514.6990679093
[2025-12-13 20:40:58] 2025-12-14 00:53:27,092 | INFO     | intersect: -4222307369.716161
[2025-12-13 20:40:58] 2025-12-14 00:53:27,111 | INFO     | chi2: 3.239181480684495
[2025-12-13 20:40:58] 2025-12-14 00:53:27,111 | INFO     | current chi2=3.239181480684495 (change=38.99147974846902 %)
[2025-12-13 20:40:58] 2025-12-14 00:53:27,112 | INFO     | sum of square deviations: 128745745104.15549
[2025-12-13 20:40:58] 2025-12-14 00:53:27,197 | INFO     | sum of deviations: 311704189234.6511
[2025-12-13 20:40:58] 2025-12-14 00:53:27,197 | INFO     | mean x: 1765650183.1260054
[2025-12-13 20:40:58] 2025-12-14 00:53:27,197 | INFO     | mean y: 2482363.1313672923
[2025-12-13 20:40:58] 2025-12-14 00:53:27,206 | INFO     | intersect: -4272304025.794048
[2025-12-13 20:40:58] 2025-12-14 00:53:27,207 | INFO     | chi2: 3.2394123904257492
[2025-12-13 20:40:58] 2025-12-14 00:53:27,208 | INFO     | current chi2=3.2394123904257492 (change=-0.007128644771248329 %)
[2025-12-13 20:40:58] 2025-12-14 00:53:27,208 | INFO     | right removable region: 745
[2025-12-13 20:40:58] 2025-12-14 00:53:27,209 | INFO     | sum of square deviations: 131350870187.20865
[2025-12-13 20:40:58] 2025-12-14 00:53:27,206 | INFO     | time since job start (46319s) is within the limit (174528.0s)
[2025-12-13 20:40:58] 2025-12-14 00:53:27,286 | INFO     | sum of deviations: -36703254827.882774
[2025-12-13 20:40:58] 2025-12-14 00:53:27,286 | INFO     | mean x: 1765650640.6391478
[2025-12-13 20:40:58] 2025-12-14 00:53:27,346 | INFO     | mean y: 2486807.6830892144
[2025-12-13 20:40:58] 2025-12-14 00:53:27,346 | INFO     | intersect: 495860968.8746307
[2025-12-13 20:40:58] 2025-12-14 00:53:27,351 | INFO     | chi2: 2.342291607529578
[2025-12-13 20:40:58] 2025-12-14 00:53:27,351 | INFO     | current chi2=2.342291607529578 (change=55.88399543987202 %)
[2025-12-13 20:40:58] 2025-12-14 00:53:27,352 | INFO     | sum of square deviations: 128744429795.96231
[2025-12-13 20:40:58] 2025-12-14 00:53:27,436 | INFO     | monitor loop #2086: job 0:6928821852 is in state 'finished'
[2025-12-13 20:40:58] 2025-12-14 00:53:27,436 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 20:40:58] 2025-12-14 00:53:27,591 | INFO     | sum of deviations: -86261670636.75067
[2025-12-13 20:40:58] 2025-12-14 00:53:27,591 | INFO     | mean x: 1765650793.155496
[2025-12-13 20:40:58] 2025-12-14 00:53:27,591 | INFO     | mean y: 2489704.609919571
[2025-12-13 20:40:58] 2025-12-14 00:53:27,591 | INFO     | intersect: 1185515544.4080284
[2025-12-13 20:40:58] 2025-12-14 00:53:27,592 | INFO     | chi2: 2.1800411799216213
[2025-12-13 20:40:58] 2025-12-14 00:53:27,593 | INFO     | current chi2=2.1800411799216213 (change=6.92699521641043 %)
[2025-12-13 20:40:58] 2025-12-14 00:53:27,593 | INFO     | left removable region: 20
[2025-12-13 20:40:58] 2025-12-14 00:53:27,645 | INFO     | sum of square deviations: 118175420068.47418
[2025-12-13 20:40:58] 2025-12-14 00:53:27,721 | INFO     | sum of deviations: 23049435937.251038
[2025-12-13 20:40:58] 2025-12-14 00:53:27,722 | INFO     | mean x: 1765650762.6772413
[2025-12-13 20:40:58] 2025-12-14 00:53:27,722 | INFO     | mean y: 2499537.4455172415
[2025-12-13 20:40:58] 2025-12-14 00:53:27,722 | INFO     | intersect: -341880487.76028585
[2025-12-13 20:40:58] 2025-12-14 00:53:27,751 | INFO     | chi2: 0.012383165004854741
[2025-12-13 20:40:58] 2025-12-14 00:53:27,752 | INFO     | current memory leak: 0.20 B/s (using 725 data points, chi2=0.01)
[2025-12-13 20:40:58] 2025-12-14 00:53:27,770 | INFO     | could have reported an average CPU frequency of 2600 MHz (28 samples)
[2025-12-13 20:40:58] 2025-12-14 00:53:27,770 | INFO     | ..............................
[2025-12-13 20:40:58] 2025-12-14 00:53:27,771 | INFO     | . Timing measurements:
[2025-12-13 20:40:58] 2025-12-14 00:53:27,771 | INFO     | . get job = 0 s
[2025-12-13 20:40:58] 2025-12-14 00:53:27,771 | INFO     | . initial setup = 5 s
[2025-12-13 20:40:58] 2025-12-14 00:53:27,771 | INFO     | . payload setup = 53 s
[2025-12-13 20:40:58] 2025-12-14 00:53:27,771 | INFO     | . stage-in = 0 s
[2025-12-13 20:40:58] 2025-12-14 00:53:27,771 | INFO     | . payload execution = 46119 s
[2025-12-13 20:40:58] 2025-12-14 00:53:27,771 | INFO     | . stage-out = 9 s
[2025-12-13 20:40:58] 2025-12-14 00:53:27,771 | INFO     | . log creation = 2 s
[2025-12-13 20:40:58] 2025-12-14 00:53:27,771 | INFO     | ..............................
[2025-12-13 20:40:58] 2025-12-14 00:53:28,310 | INFO     | 
[2025-12-13 20:40:58] 2025-12-14 00:53:28,311 | INFO     | job summary report
[2025-12-13 20:40:58] 2025-12-14 00:53:28,311 | INFO     | --------------------------------------------------
[2025-12-13 20:40:58] 2025-12-14 00:53:28,311 | INFO     | PanDA job id: 6928821852
[2025-12-13 20:40:58] 2025-12-14 00:53:28,311 | INFO     | task id: 47886831
[2025-12-13 20:40:58] 2025-12-14 00:53:28,311 | INFO     | errors: (none)
[2025-12-13 20:40:58] 2025-12-14 00:53:28,311 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 20:40:58] 2025-12-14 00:53:28,311 | INFO     | pilot state: finished 
[2025-12-13 20:40:58] 2025-12-14 00:53:28,311 | INFO     | transexitcode: 0
[2025-12-13 20:40:58] 2025-12-14 00:53:28,312 | INFO     | exeerrorcode: 0
[2025-12-13 20:40:58] 2025-12-14 00:53:28,312 | INFO     | exeerrordiag: 
[2025-12-13 20:40:58] 2025-12-14 00:53:28,312 | INFO     | exitcode: 0
[2025-12-13 20:40:58] 2025-12-14 00:53:28,312 | INFO     | exitmsg: OK
[2025-12-13 20:40:58] 2025-12-14 00:53:28,312 | INFO     | cpuconsumptiontime: 56763 s
[2025-12-13 20:40:58] 2025-12-14 00:53:28,312 | INFO     | nevents: 400
[2025-12-13 20:40:58] 2025-12-14 00:53:28,312 | INFO     | neventsw: 0
[2025-12-13 20:40:58] 2025-12-14 00:53:28,312 | INFO     | pid: 2322384
[2025-12-13 20:40:58] 2025-12-14 00:53:28,313 | INFO     | pgrp: 2322384
[2025-12-13 20:40:58] 2025-12-14 00:53:28,313 | INFO     | corecount: 8
[2025-12-13 20:40:58] 2025-12-14 00:53:28,313 | INFO     | event service: False
[2025-12-13 20:40:58] 2025-12-14 00:53:28,313 | INFO     | sizes: {0: 2283811, 1: 2283839, 2: 2284038, 13: 2284038, 25: 2284094, 28: 2284384, 35: 2284540, 46178: 2327850, 46179: 2327849, 46191: 2336903, 46193: 2336959, 462
[2025-12-13 20:40:58] 2025-12-14 00:53:28,313 | INFO     | --------------------------------------------------
[2025-12-13 20:40:58] 2025-12-14 00:53:28,313 | INFO     | 
[2025-12-13 20:40:58] 2025-12-14 00:53:28,313 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-13 20:40:58] 2025-12-14 00:53:28,581 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 20:40:58] 2025-12-14 00:53:28,582 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 20:40:58] 2025-12-14 00:53:28,582 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 20:40:58] 2025-12-14 00:53:28,582 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 20:40:58] 2025-12-14 00:53:28,582 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 20:40:58] 2025-12-14 00:53:28,582 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 20:40:58] 2025-12-14 00:53:28,582 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 20:40:58] 2025-12-14 00:53:28,582 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 20:40:58] 2025-12-14 00:53:28,582 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 20:40:58] 2025-12-14 00:53:28,583 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 20:40:58] 2025-12-14 00:53:28,583 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 20:40:58] 2025-12-14 00:53:28,583 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 20:40:58] 2025-12-14 00:53:28,583 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 20:40:58] 2025-12-14 00:53:28,583 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 20:40:58] 2025-12-14 00:53:28,583 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 20:40:58] 2025-12-14 00:53:28,583 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 20:40:58] 2025-12-14 00:53:28,583 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 20:40:58] 2025-12-14 00:53:28,583 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 20:40:58] 2025-12-14 00:53:28,583 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 20:40:58] 2025-12-14 00:53:28,584 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 20:40:58] 2025-12-14 00:53:28,584 | INFO     | job 6928821852 has completed (purged errors)
[2025-12-13 20:40:58] 2025-12-14 00:53:28,584 | INFO     | overall cleanup function is called
[2025-12-13 20:40:58] 2025-12-14 00:53:29,604 | INFO     | --- collectZombieJob: --- 10, [2322384]
[2025-12-13 20:40:58] 2025-12-14 00:53:29,604 | INFO     | zombie collector waiting for pid 2322384
[2025-12-13 20:40:58] 2025-12-14 00:53:29,604 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 20:40:58] 2025-12-14 00:53:29,604 | INFO     | collected zombie processes
[2025-12-13 20:40:58] 2025-12-14 00:53:29,604 | INFO     | will attempt to kill all subprocesses of pid=2322384
[2025-12-13 20:40:58] 2025-12-14 00:53:32,728 | INFO     | process IDs to be killed: [2322384] (in reverse order)
[2025-12-13 20:40:58] 2025-12-14 00:53:34,057 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 20:40:58] 2025-12-14 00:53:34,058 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 20:40:58] 2025-12-14 00:53:34,181 | INFO     | did not find any defunct processes belonging to 2322384
[2025-12-13 20:40:58] 2025-12-14 00:53:34,380 | INFO     | did not find any defunct processes belonging to 2322384
[2025-12-13 20:40:58] 2025-12-14 00:53:34,381 | INFO     | ready for new job
[2025-12-13 20:40:58] 2025-12-14 00:53:34,381 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 20:40:58] 2025-12-14 00:53:34,445 | INFO     | ***************************************
[2025-12-13 20:40:58] 2025-12-14 00:53:34,445 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 20:40:58] 2025-12-14 00:53:34,445 | INFO     | ***************************************
[2025-12-13 20:40:58] 2025-12-14 00:53:34,463 | INFO     | 
[2025-12-13 20:40:58] 2025-12-14 00:53:34,465 | INFO     | architecture information:
[2025-12-13 20:40:58] 2025-12-14 00:53:34,477 | INFO     | executing command: cat /etc/os-release
[2025-12-13 20:40:58] 2025-12-14 00:53:34,649 | INFO     | cat /etc/os-release:
[2025-12-13 20:40:58] NAME="CentOS Linux"
[2025-12-13 20:40:58] VERSION="7 (Core)"
[2025-12-13 20:40:58] ID="centos"
[2025-12-13 20:40:58] ID_LIKE="rhel fedora"
[2025-12-13 20:40:58] VERSION_ID="7"
[2025-12-13 20:40:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 20:40:58] ANSI_COLOR="0;31"
[2025-12-13 20:40:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 20:40:58] HOME_URL="https://www.centos.org/"
[2025-12-13 20:40:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 20:40:58] 
[2025-12-13 20:40:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 20:40:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 20:40:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 20:40:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 20:40:58] 
[2025-12-13 20:40:58] 2025-12-14 00:53:34,649 | INFO     | ***************************************
[2025-12-13 20:40:58] 2025-12-14 00:53:35,153 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-13 20:40:58] 2025-12-14 00:53:35,399 | INFO     | sufficient remaining disk space (75594989568 B)
[2025-12-13 20:40:58] 2025-12-14 00:53:35,399 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 20:40:58] 2025-12-14 00:53:35,400 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 20:40:58] 2025-12-14 00:53:35,400 | INFO     | update_server=False
[2025-12-13 20:40:58] 2025-12-14 00:53:35,400 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 20:40:58] 2025-12-14 00:53:35,421 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 20:40:58] 2025-12-14 00:53:35,458 | INFO     | all data control threads have been joined
[2025-12-13 20:40:58] 2025-12-14 00:53:36,111 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 20:40:58] 2025-12-14 00:53:36,118 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 20:40:58] 2025-12-14 00:53:36,118 | INFO     | aborting loop
[2025-12-13 20:40:58] 2025-12-14 00:53:36,294 | INFO     | all job control threads have been joined
[2025-12-13 20:40:58] 2025-12-14 00:53:36,405 | INFO     | [job] retrieve thread has finished
[2025-12-13 20:40:58] 2025-12-14 00:53:36,464 | INFO     | [data] control thread has finished
[2025-12-13 20:40:58] 2025-12-14 00:53:36,752 | INFO     | all payload control threads have been joined
[2025-12-13 20:40:58] 2025-12-14 00:53:36,830 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 20:40:58] 2025-12-14 00:53:36,954 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 20:40:58] 2025-12-14 00:53:37,053 | INFO     | [payload] validate_post thread has finished
[2025-12-13 20:40:58] 2025-12-14 00:53:37,053 | INFO     | [payload] failed_post thread has finished
[2025-12-13 20:40:58] 2025-12-14 00:53:37,136 | INFO     | [job] job monitor thread has finished
[2025-12-13 20:40:58] 2025-12-14 00:53:37,301 | INFO     | [job] control thread has finished
[2025-12-13 20:40:58] 2025-12-14 00:53:37,360 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 20:40:58] 2025-12-14 00:53:37,556 | INFO     | [job] validate thread has finished
[2025-12-13 20:40:58] 2025-12-14 00:53:37,630 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 20:40:58] 2025-12-14 00:53:37,680 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 20:40:58] 2025-12-14 00:53:37,758 | INFO     | [payload] control thread has finished
[2025-12-13 20:40:58] 2025-12-14 00:53:37,875 | INFO     | [data] copytool_in thread has finished
[2025-12-13 20:40:58] 2025-12-14 00:53:38,124 | INFO     | [data] copytool_out thread has finished
[2025-12-13 20:40:58] 2025-12-14 00:53:38,366 | INFO     | [job] queue monitor thread has finished
[2025-12-13 20:40:58] 2025-12-14 00:53:39,430 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 20:40:58] 2025-12-14 00:54:01,136 | INFO     | [monitor] cgroup control has ended
[2025-12-13 20:40:58] 2025-12-14 00:54:01,892 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140354853676864)>', '<ExcThread(monitor, started 140354196059904)>']
[2025-12-13 20:40:58] 2025-12-14 00:54:05,999 | INFO     | PID=2304606 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-13 20:40:58] 2025-12-14 00:54:05,999 | INFO     | .. there are 37 such processes running
[2025-12-13 20:40:58] 2025-12-14 00:54:06,078 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 20:40:58] 2025-12-14 00:54:06,082 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 20:40:58] 2025-12-14 00:54:06,082 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 20:40:58] 2025-12-14 00:54:06,082 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 20:40:58] 2025-12-14 00:54:06,082 | INFO     | [monitor] control thread has ended
[2025-12-13 20:40:58] 2025-12-14 00:54:06,918 | INFO     | all workflow threads have been joined
[2025-12-13 20:40:58] 2025-12-14 00:54:06,918 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 20:40:58] 2025-12-14 00:54:06,918 | INFO     | traces error code: 0
[2025-12-13 20:40:58] 2025-12-14 00:54:06,918 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 20:40:58] 2025-12-14 00:54:07,612 [wrapper] ==== pilot stdout END ====
[2025-12-13 20:40:58] 2025-12-14 00:54:07,688 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 20:40:58] 2025-12-14 00:54:07,766 [wrapper] pilotpid: 2304606
[2025-12-13 20:40:58] 2025-12-14 00:54:07,818 [wrapper] Pilot exit status: 0
[2025-12-13 20:40:58] 2025-12-14 00:54:08,022 [wrapper] pandaids: 6928821852 6928821852
[2025-12-13 20:40:58] 2025-12-14 00:54:08,852 [wrapper] cleanup supervisor_pilot  473962 2304607
[2025-12-13 20:40:58] 2025-12-14 00:54:08,890 [wrapper] Test setup, not cleaning
[2025-12-13 20:40:58] 2025-12-14 00:54:08,921 [wrapper] apfmon messages muted
[2025-12-13 20:40:58] 2025-12-14 00:54:08,999 [wrapper] ==== wrapper stdout END ====
[2025-12-13 20:40:58] 2025-12-14 00:54:09,039 [wrapper] ==== wrapper stderr END ====
[2025-12-13 20:40:58]  *** Error codes and diagnostics ***
[2025-12-13 20:40:58]     "exeErrorCode": 0,
[2025-12-13 20:40:58]     "exeErrorDiag": "",
[2025-12-13 20:40:58]     "pilotErrorCode": 0,
[2025-12-13 20:40:58]     "pilotErrorDiag": "",
[2025-12-13 20:40:58]  *** Listing of results directory ***
[2025-12-13 20:40:58] total 539768
[2025-12-13 20:40:58] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2025-12-13 20:40:58] -rw-r--r--. 1 boincer umatlas    579449 Dec 12 20:46 pilot3.tar.gz
[2025-12-13 20:40:58] -rw-r--r--. 1 boincer umatlas      5112 Dec 12 20:46 queuedata.json
[2025-12-13 20:40:58] -rwx------. 1 boincer umatlas     36322 Dec 12 20:49 runpilot2-wrapper.sh
[2025-12-13 20:40:58] -rw-r--r--. 1 boincer umatlas       100 Dec 13 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 20:40:58] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 13 00:00 run_atlas
[2025-12-13 20:40:58] -rw-r--r--. 1 boincer umatlas       105 Dec 13 00:00 job.xml
[2025-12-13 20:40:58] -rw-r--r--. 3 boincer umatlas 193048230 Dec 13 00:00 EVNT.47886829._000031.pool.root.1
[2025-12-13 20:40:58] -rw-r--r--. 3 boincer umatlas 193048230 Dec 13 00:00 ATLAS.root_0
[2025-12-13 20:40:58] drwxrwx--x. 2 boincer umatlas      4096 Dec 13 00:00 shared
[2025-12-13 20:40:58] -rw-r--r--. 2 boincer umatlas    592416 Dec 13 00:00 input.tar.gz
[2025-12-13 20:40:58] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 00:00 start_atlas.sh
[2025-12-13 20:40:58] -rw-r--r--. 1 boincer umatlas         0 Dec 13 00:00 boinc_lockfile
[2025-12-13 20:40:58] -rw-r--r--. 1 boincer umatlas      2533 Dec 13 07:00 pandaJob.out
[2025-12-13 20:40:58] -rw-------. 1 boincer umatlas        57 Dec 13 07:00 setup.sh.local
[2025-12-13 20:40:58] -rw-------. 1 boincer umatlas    991728 Dec 13 07:01 agis_schedconf.cvmfs.json
[2025-12-13 20:40:58] -rw-------. 1 boincer umatlas 151540861 Dec 13 19:48 HITS.47886831._000766.pool.root.1
[2025-12-13 20:40:58] -rw-r--r--. 1 boincer umatlas       531 Dec 13 19:49 boinc_task_state.xml
[2025-12-13 20:40:58] -rw-------. 1 boincer umatlas      1051 Dec 13 19:52 memory_monitor_summary.json
[2025-12-13 20:40:58] -rw-------. 1 boincer umatlas   1516240 Dec 13 19:52 agis_ddmendpoints.agis.ALL.json
[2025-12-13 20:40:58] -rw-------. 1 boincer umatlas    788644 Dec 13 19:52 log.47886831._000766.job.log.tgz.1
[2025-12-13 20:40:58] -rw-------. 1 boincer umatlas      7836 Dec 13 19:53 heartbeat.json
[2025-12-13 20:40:58] -rw-------. 1 boincer umatlas        96 Dec 13 19:54 pilot_heartbeat.json
[2025-12-13 20:40:58] -rw-------. 1 boincer umatlas      4824 Dec 13 19:54 pilotlog.txt
[2025-12-13 20:40:58] -rw-------. 1 boincer umatlas   4794433 Dec 13 19:54 log.47886831._000766.job.log.1
[2025-12-13 20:40:58] -rw-------. 1 boincer umatlas       357 Dec 13 19:54 output.list
[2025-12-13 20:40:58] -rw-r--r--. 1 boincer umatlas       620 Dec 13 19:54 runtime_log
[2025-12-13 20:40:58] -rw-------. 1 boincer umatlas   5601280 Dec 13 19:54 result.tar.gz
[2025-12-13 20:40:58] -rw-r--r--. 1 boincer umatlas      9418 Dec 13 19:54 runtime_log.err
[2025-12-13 20:40:58] -rw-------. 1 boincer umatlas       786 Dec 13 19:54 ewyNDm8vTo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6FRKDmCtkNPm.diag
[2025-12-13 20:40:58] -rw-r--r--. 1 boincer umatlas      6660 Dec 13 20:40 init_data.xml
[2025-12-13 20:40:58] -rw-r--r--. 1 boincer umatlas        28 Dec 13 20:40 wrapper_checkpoint.txt
[2025-12-13 20:40:58] -rw-r--r--. 1 boincer umatlas      8192 Dec 13 20:40 boinc_mmap_file
[2025-12-13 20:40:58] -rw-r--r--. 1 boincer umatlas     23372 Dec 13 20:40 stderr.txt
[2025-12-13 20:40:59] HITS file was successfully produced:
[2025-12-13 20:40:59] -rw-------. 1 boincer umatlas 151540861 Dec 13 19:48 shared/HITS.pool.root.1
[2025-12-13 20:40:59]  *** Contents of shared directory: ***
[2025-12-13 20:40:59] total 342588
[2025-12-13 20:40:59] -rw-r--r--. 3 boincer umatlas 193048230 Dec 13 00:00 ATLAS.root_0
[2025-12-13 20:40:59] -rw-r--r--. 2 boincer umatlas    592416 Dec 13 00:00 input.tar.gz
[2025-12-13 20:40:59] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 00:00 start_atlas.sh
[2025-12-13 20:40:59] -rw-------. 1 boincer umatlas 151540861 Dec 13 19:48 HITS.pool.root.1
[2025-12-13 20:40:59] -rw-------. 1 boincer umatlas   5601280 Dec 13 19:54 result.tar.gz
20:41:00 (2294411): run_atlas exited; CPU time 58423.810973
20:41:00 (2294411): called boinc_finish(0)

</stderr_txt>
]]>

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