Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:36:58 (9488): wrapper (7.7.26015): starting
06:36:58 (9488): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 06:36:58] Arguments: --nthreads 8
[2025-12-13 06:36:58] Threads: 8
[2025-12-13 06:36:58] Checking for CVMFS
[2025-12-13 06:36:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 06:37:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 06:37:00] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 06:37:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 06:37:01] 2.11.2.0 28366 196244 139628 153950 1 60 16818335 25165824 4650 130560 12 64229775 99.879 35269048 2165 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-13 06:37:01] CVMFS is ok
[2025-12-13 06:37:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 06:37:01] Checking for apptainer binary...
[2025-12-13 06:37:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 06:37:01] Running /usr/bin/apptainer --version
[2025-12-13 06:37:01] apptainer version 1.3.2-1.el7
[2025-12-13 06:37:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 06:37:28] cg-vwn288.simple-grid.lan
[2025-12-13 06:37:28] apptainer works
[2025-12-13 06:37:28] Set ATHENA_PROC_NUMBER=8
[2025-12-13 06:37:28] Set ATHENA_CORE_NUMBER=8
[2025-12-13 06:37:28] Starting ATLAS job with PandaID=6928799573
[2025-12-13 06:37:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 11:15:46]  *** The last 200 lines of the pilot log: ***
[2025-12-13 11:15:46] 2025-12-13 10:14:48,159 | INFO     | time since job start (16420s) is within the limit (174528.0s)
[2025-12-13 11:15:46] 2025-12-13 10:14:49,156 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-13 11:15:46] 2025-12-13 10:14:49,157 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-13 11:15:46] 2025-12-13 10:14:49,159 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6928799573/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 11:15:46] 2025-12-13 10:14:49,160 | INFO     | extracted standard info from prmon json
[2025-12-13 11:15:46] 2025-12-13 10:14:49,160 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 11:15:46] 2025-12-13 10:14:49,160 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 11:15:46] 2025-12-13 10:14:49,160 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 11:15:46] 2025-12-13 10:14:49,161 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 11:15:46] 2025-12-13 10:14:49,166 | INFO     | fitting pss+swap vs Time
[2025-12-13 11:15:46] 2025-12-13 10:14:49,167 | INFO     | sum of square deviations: 5449944045.0
[2025-12-13 11:15:46] 2025-12-13 10:14:49,170 | INFO     | sum of deviations: 111094827205.5
[2025-12-13 11:15:46] 2025-12-13 10:14:49,170 | INFO     | mean x: 1765612844.5
[2025-12-13 11:15:46] 2025-12-13 10:14:49,170 | INFO     | mean y: 2433962.3346153847
[2025-12-13 11:15:46] 2025-12-13 10:14:49,170 | INFO     | intersect: -35988844526.38588
[2025-12-13 11:15:46] 2025-12-13 10:14:49,171 | INFO     | chi2: 5.751690409901119
[2025-12-13 11:15:46] 2025-12-13 10:14:49,171 | INFO     | sum of square deviations: 5141528960.0
[2025-12-13 11:15:46] 2025-12-13 10:14:49,179 | INFO     | sum of deviations: 108755490473.0
[2025-12-13 11:15:46] 2025-12-13 10:14:49,179 | INFO     | mean x: 1765612692.0
[2025-12-13 11:15:46] 2025-12-13 10:14:49,179 | INFO     | mean y: 2432805.4784313724
[2025-12-13 11:15:46] 2025-12-13 10:14:49,180 | INFO     | intersect: -37344448987.406364
[2025-12-13 11:15:46] 2025-12-13 10:14:49,180 | INFO     | chi2: 5.759695522159091
[2025-12-13 11:15:46] 2025-12-13 10:14:49,180 | INFO     | current chi2=5.759695522159091 (change=-0.1391784273400982 %)
[2025-12-13 11:15:46] 2025-12-13 10:14:49,180 | INFO     | right removable region: 254
[2025-12-13 11:15:46] 2025-12-13 10:14:49,181 | INFO     | sum of square deviations: 5141528960.0
[2025-12-13 11:15:46] 2025-12-13 10:14:49,183 | INFO     | sum of deviations: 22457522100.0
[2025-12-13 11:15:46] 2025-12-13 10:14:49,184 | INFO     | mean x: 1765612997.0
[2025-12-13 11:15:46] 2025-12-13 10:14:49,184 | INFO     | mean y: 2477756.262745098
[2025-12-13 11:15:46] 2025-12-13 10:14:49,184 | INFO     | intersect: -7709487538.234931
[2025-12-13 11:15:46] 2025-12-13 10:14:49,184 | INFO     | chi2: 1.0932656847926725
[2025-12-13 11:15:46] 2025-12-13 10:14:49,184 | INFO     | current chi2=1.0932656847926725 (change=80.99227171701219 %)
[2025-12-13 11:15:46] 2025-12-13 10:14:49,185 | INFO     | sum of square deviations: 4844974562.5
[2025-12-13 11:15:46] 2025-12-13 10:14:49,187 | INFO     | sum of deviations: -13741847315.499998
[2025-12-13 11:15:46] 2025-12-13 10:14:49,187 | INFO     | mean x: 1765613149.5
[2025-12-13 11:15:46] 2025-12-13 10:14:49,188 | INFO     | mean y: 2496258.564
[2025-12-13 11:15:46] 2025-12-13 10:14:49,188 | INFO     | intersect: 5010321584.71979
[2025-12-13 11:15:46] 2025-12-13 10:14:49,188 | INFO     | chi2: 0.12466398576868928
[2025-12-13 11:15:46] 2025-12-13 10:14:49,188 | INFO     | current chi2=0.12466398576868928 (change=88.59710064051534 %)
[2025-12-13 11:15:46] 2025-12-13 10:14:49,189 | INFO     | sum of square deviations: 4560048290.0
[2025-12-13 11:15:46] 2025-12-13 10:14:49,191 | INFO     | sum of deviations: -10413612987.0
[2025-12-13 11:15:46] 2025-12-13 10:14:49,191 | INFO     | mean x: 1765613302.0
[2025-12-13 11:15:46] 2025-12-13 10:14:49,191 | INFO     | mean y: 2494448.5714285714
[2025-12-13 11:15:46] 2025-12-13 10:14:49,192 | INFO     | intersect: 4034559997.5367346
[2025-12-13 11:15:46] 2025-12-13 10:14:49,192 | INFO     | chi2: 0.10604134775559794
[2025-12-13 11:15:46] 2025-12-13 10:14:49,192 | INFO     | current chi2=0.10604134775559794 (change=14.938266170668694 %)
[2025-12-13 11:15:46] 2025-12-13 10:14:49,192 | INFO     | left removable region: 30
[2025-12-13 11:15:46] 2025-12-13 10:14:49,193 | INFO     | sum of square deviations: 3485088600.0
[2025-12-13 11:15:46] 2025-12-13 10:14:49,195 | INFO     | sum of deviations: 8108167793.500002
[2025-12-13 11:15:46] 2025-12-13 10:14:49,195 | INFO     | mean x: 1765613576.5
[2025-12-13 11:15:46] 2025-12-13 10:14:49,195 | INFO     | mean y: 2483396.816964286
[2025-12-13 11:15:46] 2025-12-13 10:14:49,195 | INFO     | intersect: -4105271894.323597
[2025-12-13 11:15:46] 2025-12-13 10:14:49,201 | INFO     | chi2: 0.0004392389053805548
[2025-12-13 11:15:46] 2025-12-13 10:14:49,201 | INFO     | current memory leak: 2.33 B/s (using 224 data points, chi2=0.00)
[2025-12-13 11:15:46] 2025-12-13 10:14:49,202 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2025-12-13 11:15:46] 2025-12-13 10:14:49,202 | INFO     | ..............................
[2025-12-13 11:15:46] 2025-12-13 10:14:49,202 | INFO     | . Timing measurements:
[2025-12-13 11:15:46] 2025-12-13 10:14:49,202 | INFO     | . get job = 0 s
[2025-12-13 11:15:46] 2025-12-13 10:14:49,202 | INFO     | . initial setup = 10 s
[2025-12-13 11:15:46] 2025-12-13 10:14:49,203 | INFO     | . payload setup = 133 s
[2025-12-13 11:15:46] 2025-12-13 10:14:49,203 | INFO     | . stage-in = 0 s
[2025-12-13 11:15:46] 2025-12-13 10:14:49,203 | INFO     | . payload execution = 16004 s
[2025-12-13 11:15:46] 2025-12-13 10:14:49,203 | INFO     | . stage-out = 5 s
[2025-12-13 11:15:46] 2025-12-13 10:14:49,203 | INFO     | . log creation = 0 s
[2025-12-13 11:15:46] 2025-12-13 10:14:49,203 | INFO     | ..............................
[2025-12-13 11:15:46] 2025-12-13 10:14:49,548 | INFO     | 
[2025-12-13 11:15:46] 2025-12-13 10:14:49,549 | INFO     | job summary report
[2025-12-13 11:15:46] 2025-12-13 10:14:49,549 | INFO     | --------------------------------------------------
[2025-12-13 11:15:46] 2025-12-13 10:14:49,549 | INFO     | PanDA job id: 6928799573
[2025-12-13 11:15:46] 2025-12-13 10:14:49,549 | INFO     | task id: 47886831
[2025-12-13 11:15:46] 2025-12-13 10:14:49,549 | INFO     | errors: (none)
[2025-12-13 11:15:46] 2025-12-13 10:14:49,549 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 11:15:46] 2025-12-13 10:14:49,549 | INFO     | pilot state: finished 
[2025-12-13 11:15:46] 2025-12-13 10:14:49,550 | INFO     | transexitcode: 0
[2025-12-13 11:15:46] 2025-12-13 10:14:49,550 | INFO     | exeerrorcode: 0
[2025-12-13 11:15:46] 2025-12-13 10:14:49,550 | INFO     | exeerrordiag: 
[2025-12-13 11:15:46] 2025-12-13 10:14:49,550 | INFO     | exitcode: 0
[2025-12-13 11:15:46] 2025-12-13 10:14:49,550 | INFO     | exitmsg: OK
[2025-12-13 11:15:46] 2025-12-13 10:14:49,550 | INFO     | cpuconsumptiontime: 60107 s
[2025-12-13 11:15:46] 2025-12-13 10:14:49,550 | INFO     | nevents: 400
[2025-12-13 11:15:46] 2025-12-13 10:14:49,550 | INFO     | neventsw: 0
[2025-12-13 11:15:46] 2025-12-13 10:14:49,550 | INFO     | pid: 19877
[2025-12-13 11:15:46] 2025-12-13 10:14:49,550 | INFO     | pgrp: 19877
[2025-12-13 11:15:46] 2025-12-13 10:14:49,550 | INFO     | corecount: 8
[2025-12-13 11:15:46] 2025-12-13 10:14:49,551 | INFO     | event service: False
[2025-12-13 11:15:46] 2025-12-13 10:14:49,551 | INFO     | sizes: {0: 2283811, 1: 2284010, 12: 2284010, 23: 2284038, 33: 2284066, 44: 2284122, 55: 2284278, 66: 2284306, 76: 2284334, 87: 2284390, 94: 2284680, 98: 2284988, 1
[2025-12-13 11:15:46] 2025-12-13 10:14:49,551 | INFO     | --------------------------------------------------
[2025-12-13 11:15:46] 2025-12-13 10:14:49,551 | INFO     | 
[2025-12-13 11:15:46] 2025-12-13 10:14:49,551 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-12-13 11:15:46] 2025-12-13 10:14:49,893 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 11:15:46] 2025-12-13 10:14:49,893 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 11:15:46] 2025-12-13 10:14:49,894 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 11:15:46] 2025-12-13 10:14:49,894 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 11:15:46] 2025-12-13 10:14:49,894 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 11:15:46] 2025-12-13 10:14:49,894 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 11:15:46] 2025-12-13 10:14:49,894 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 11:15:46] 2025-12-13 10:14:49,894 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 11:15:46] 2025-12-13 10:14:49,894 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 11:15:46] 2025-12-13 10:14:49,894 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 11:15:46] 2025-12-13 10:14:49,894 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 11:15:46] 2025-12-13 10:14:49,894 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 11:15:46] 2025-12-13 10:14:49,895 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 11:15:46] 2025-12-13 10:14:49,895 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 11:15:46] 2025-12-13 10:14:49,895 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 11:15:46] 2025-12-13 10:14:49,895 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 11:15:46] 2025-12-13 10:14:49,895 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 11:15:46] 2025-12-13 10:14:49,895 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 11:15:46] 2025-12-13 10:14:49,895 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 11:15:46] 2025-12-13 10:14:49,895 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 11:15:46] 2025-12-13 10:14:49,895 | INFO     | job 6928799573 has completed (purged errors)
[2025-12-13 11:15:46] 2025-12-13 10:14:49,896 | INFO     | overall cleanup function is called
[2025-12-13 11:15:46] 2025-12-13 10:14:50,905 | INFO     | --- collectZombieJob: --- 10, [19877]
[2025-12-13 11:15:46] 2025-12-13 10:14:50,905 | INFO     | zombie collector waiting for pid 19877
[2025-12-13 11:15:46] 2025-12-13 10:14:50,905 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 11:15:46] 2025-12-13 10:14:50,905 | INFO     | collected zombie processes
[2025-12-13 11:15:46] 2025-12-13 10:14:50,905 | INFO     | will attempt to kill all subprocesses of pid=19877
[2025-12-13 11:15:46] 2025-12-13 10:14:51,062 | INFO     | process IDs to be killed: [19877] (in reverse order)
[2025-12-13 11:15:46] 2025-12-13 10:14:51,708 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 11:15:46] 2025-12-13 10:14:51,709 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 11:15:46] 2025-12-13 10:14:51,712 | INFO     | did not find any defunct processes belonging to 19877
[2025-12-13 11:15:46] 2025-12-13 10:14:51,715 | INFO     | did not find any defunct processes belonging to 19877
[2025-12-13 11:15:46] 2025-12-13 10:14:51,715 | INFO     | ready for new job
[2025-12-13 11:15:46] 2025-12-13 10:14:51,715 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 11:15:46] 2025-12-13 10:14:51,717 | INFO     | ***************************************
[2025-12-13 11:15:46] 2025-12-13 10:14:51,717 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 11:15:46] 2025-12-13 10:14:51,718 | INFO     | ***************************************
[2025-12-13 11:15:46] 2025-12-13 10:14:51,718 | INFO     | 
[2025-12-13 11:15:46] 2025-12-13 10:14:51,718 | INFO     | pilot is running in a VM
[2025-12-13 11:15:46] 2025-12-13 10:14:51,718 | INFO     | architecture information:
[2025-12-13 11:15:46] 2025-12-13 10:14:51,730 | INFO     | executing command: cat /etc/os-release
[2025-12-13 11:15:46] 2025-12-13 10:14:51,943 | INFO     | cat /etc/os-release:
[2025-12-13 11:15:46] NAME="CentOS Linux"
[2025-12-13 11:15:46] VERSION="7 (Core)"
[2025-12-13 11:15:46] ID="centos"
[2025-12-13 11:15:46] ID_LIKE="rhel fedora"
[2025-12-13 11:15:46] VERSION_ID="7"
[2025-12-13 11:15:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 11:15:46] ANSI_COLOR="0;31"
[2025-12-13 11:15:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 11:15:46] HOME_URL="https://www.centos.org/"
[2025-12-13 11:15:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 11:15:46] 
[2025-12-13 11:15:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 11:15:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 11:15:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 11:15:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 11:15:46] 
[2025-12-13 11:15:46] 2025-12-13 10:14:51,944 | INFO     | ***************************************
[2025-12-13 11:15:46] 2025-12-13 10:14:52,447 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-12-13 11:15:46] 2025-12-13 10:14:52,624 | INFO     | sufficient remaining disk space (497202233344 B)
[2025-12-13 11:15:46] 2025-12-13 10:14:52,624 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 11:15:46] 2025-12-13 10:14:52,625 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 11:15:46] 2025-12-13 10:14:52,625 | INFO     | update_server=False
[2025-12-13 11:15:46] 2025-12-13 10:14:52,625 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 11:15:46] 2025-12-13 10:14:52,774 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 11:15:46] 2025-12-13 10:14:53,055 | INFO     | all data control threads have been joined
[2025-12-13 11:15:46] 2025-12-13 10:14:53,304 | INFO     | all payload control threads have been joined
[2025-12-13 11:15:46] 2025-12-13 10:14:53,536 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 11:15:46] 2025-12-13 10:14:53,537 | INFO     | aborting loop
[2025-12-13 11:15:46] 2025-12-13 10:14:53,631 | INFO     | [job] retrieve thread has finished
[2025-12-13 11:15:46] 2025-12-13 10:14:53,790 | INFO     | all job control threads have been joined
[2025-12-13 11:15:46] 2025-12-13 10:14:53,845 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 11:15:46] 2025-12-13 10:14:54,062 | INFO     | [data] control thread has finished
[2025-12-13 11:15:46] 2025-12-13 10:14:54,304 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 11:15:46] 2025-12-13 10:14:54,311 | INFO     | [payload] control thread has finished
[2025-12-13 11:15:46] 2025-12-13 10:14:54,322 | INFO     | [data] copytool_in thread has finished
[2025-12-13 11:15:46] 2025-12-13 10:14:54,390 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 11:15:46] 2025-12-13 10:14:54,474 | INFO     | [payload] failed_post thread has finished
[2025-12-13 11:15:46] 2025-12-13 10:14:54,479 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 11:15:46] 2025-12-13 10:14:54,481 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 11:15:46] 2025-12-13 10:14:54,543 | INFO     | [job] job monitor thread has finished
[2025-12-13 11:15:46] 2025-12-13 10:14:54,735 | INFO     | [payload] validate_post thread has finished
[2025-12-13 11:15:46] 2025-12-13 10:14:54,781 | INFO     | [data] copytool_out thread has finished
[2025-12-13 11:15:46] 2025-12-13 10:14:54,797 | INFO     | [job] control thread has finished
[2025-12-13 11:15:46] 2025-12-13 10:14:54,890 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 11:15:46] 2025-12-13 10:14:55,089 | INFO     | [job] validate thread has finished
[2025-12-13 11:15:46] 2025-12-13 10:14:55,397 | INFO     | [job] queue monitor thread has finished
[2025-12-13 11:15:46] 2025-12-13 10:14:57,858 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 11:15:46] 2025-12-13 10:15:21,441 | INFO     | PID=13277 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 11:15:46] 2025-12-13 10:15:21,441 | INFO     | .. there are 9 such processes running
[2025-12-13 11:15:46] 2025-12-13 10:15:21,442 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 11:15:46] 2025-12-13 10:15:21,443 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 11:15:46] 2025-12-13 10:15:21,443 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 11:15:46] 2025-12-13 10:15:35,999 | INFO     | [monitor] cgroup control has ended
[2025-12-13 11:15:46] 2025-12-13 10:15:37,007 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140659916015424)>', '<ExcThread(monitor, started 140659457496832)>']
[2025-12-13 11:15:46] 2025-12-13 10:15:37,534 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 11:15:46] 2025-12-13 10:15:37,535 | INFO     | [monitor] control thread has ended
[2025-12-13 11:15:46] 2025-12-13 10:15:42,032 | INFO     | all workflow threads have been joined
[2025-12-13 11:15:46] 2025-12-13 10:15:42,033 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 11:15:46] 2025-12-13 10:15:42,033 | INFO     | traces error code: 0
[2025-12-13 11:15:46] 2025-12-13 10:15:42,033 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 11:15:46] 2025-12-13 10:15:42,238 [wrapper] ==== pilot stdout END ====
[2025-12-13 11:15:46] 2025-12-13 10:15:42,250 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 11:15:46] 2025-12-13 10:15:42,288 [wrapper] pilotpid: 13277
[2025-12-13 11:15:46] 2025-12-13 10:15:42,296 [wrapper] Pilot exit status: 0
[2025-12-13 11:15:46] 2025-12-13 10:15:42,547 [wrapper] pandaids: 6928799573
[2025-12-13 11:15:46] 2025-12-13 10:15:43,322 [wrapper] cleanup supervisor_pilot 13695 13278
[2025-12-13 11:15:46] 2025-12-13 10:15:43,425 [wrapper] Test setup, not cleaning
[2025-12-13 11:15:46] 2025-12-13 10:15:43,488 [wrapper] apfmon messages muted
[2025-12-13 11:15:46] 2025-12-13 10:15:43,589 [wrapper] ==== wrapper stdout END ====
[2025-12-13 11:15:46] 2025-12-13 10:15:43,662 [wrapper] ==== wrapper stderr END ====
[2025-12-13 11:15:46]  *** Error codes and diagnostics ***
[2025-12-13 11:15:46]     "exeErrorCode": 0,
[2025-12-13 11:15:46]     "exeErrorDiag": "",
[2025-12-13 11:15:46]     "pilotErrorCode": 0,
[2025-12-13 11:15:46]     "pilotErrorDiag": "",
[2025-12-13 11:15:46]  *** Listing of results directory ***
[2025-12-13 11:15:46] total 343564
[2025-12-13 11:15:46] -rw-r--r--. 1 boinc boinc      5112 Dec 13 01:49 queuedata.json
[2025-12-13 11:15:46] -rwx------. 1 boinc boinc     36322 Dec 13 01:49 runpilot2-wrapper.sh
[2025-12-13 11:15:46] -rw-r--r--. 1 boinc boinc    579449 Dec 13 01:49 pilot3.tar.gz
[2025-12-13 11:15:46] -rw-r--r--. 1 boinc boinc       100 Dec 13 06:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 11:15:46] -rwxr-xr-x. 1 boinc boinc      7986 Dec 13 06:36 run_atlas
[2025-12-13 11:15:46] -rw-r--r--. 1 boinc boinc       105 Dec 13 06:36 job.xml
[2025-12-13 11:15:46] -rw-r--r--. 2 boinc boinc 191024721 Dec 13 06:36 EVNT.47886829._000030.pool.root.1
[2025-12-13 11:15:46] -rw-r--r--. 1 boinc boinc      6392 Dec 13 06:36 init_data.xml
[2025-12-13 11:15:46] -rw-r--r--. 2 boinc boinc     15847 Dec 13 06:36 start_atlas.sh
[2025-12-13 11:15:46] drwxrwx--x. 2 boinc boinc        68 Dec 13 06:36 shared
[2025-12-13 11:15:46] -rw-r--r--. 2 boinc boinc    592400 Dec 13 06:36 input.tar.gz
[2025-12-13 11:15:46] -rw-r--r--. 1 boinc boinc         0 Dec 13 06:36 boinc_lockfile
[2025-12-13 11:15:46] -rw-r--r--. 1 boinc boinc      2533 Dec 13 06:37 pandaJob.out
[2025-12-13 11:15:46] -rw-------. 1 boinc boinc    991736 Dec 13 06:41 agis_schedconf.cvmfs.json
[2025-12-13 11:15:46] drwx------. 5 boinc boinc      4096 Dec 13 06:41 pilot3
[2025-12-13 11:15:46] -rw-------. 1 boinc boinc 151528547 Dec 13 11:12 HITS.47886831._000597.pool.root.1
[2025-12-13 11:15:46] -rw-r--r--. 1 boinc boinc       531 Dec 13 11:13 boinc_task_state.xml
[2025-12-13 11:15:46] -rw-------. 1 boinc boinc      1016 Dec 13 11:13 memory_monitor_summary.json
[2025-12-13 11:15:46] -rw-------. 1 boinc boinc   1516240 Dec 13 11:13 agis_ddmendpoints.agis.ALL.json
[2025-12-13 11:15:46] -rw-------. 1 boinc boinc    493351 Dec 13 11:13 log.47886831._000597.job.log.tgz.1
[2025-12-13 11:15:46] -rw-------. 1 boinc boinc      7767 Dec 13 11:14 heartbeat.json
[2025-12-13 11:15:46] -rw-r--r--. 1 boinc boinc      8192 Dec 13 11:15 boinc_mmap_file
[2025-12-13 11:15:46] -rw-r--r--. 1 boinc boinc        28 Dec 13 11:15 wrapper_checkpoint.txt
[2025-12-13 11:15:46] -rw-------. 1 boinc boinc        95 Dec 13 11:15 pilot_heartbeat.json
[2025-12-13 11:15:46] -rw-------. 1 boinc boinc      4884 Dec 13 11:15 pilotlog.txt
[2025-12-13 11:15:46] -rw-------. 1 boinc boinc   2185396 Dec 13 11:15 log.47886831._000597.job.log.1
[2025-12-13 11:15:46] -rw-------. 1 boinc boinc       357 Dec 13 11:15 output.list
[2025-12-13 11:15:46] -rw-r--r--. 1 boinc boinc       620 Dec 13 11:15 runtime_log
[2025-12-13 11:15:46] -rw-------. 1 boinc boinc   2693120 Dec 13 11:15 result.tar.gz
[2025-12-13 11:15:46] -rw-r--r--. 1 boinc boinc      8817 Dec 13 11:15 runtime_log.err
[2025-12-13 11:15:46] -rw-------. 1 boinc boinc       656 Dec 13 11:15 hNdLDmW0So8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmeFRKDmLKY0rm.diag
[2025-12-13 11:15:46] -rw-r--r--. 1 boinc boinc     20769 Dec 13 11:15 stderr.txt
[2025-12-13 11:15:46] HITS file was successfully produced:
[2025-12-13 11:15:46] -rw-------. 1 boinc boinc 151528547 Dec 13 11:12 shared/HITS.pool.root.1
[2025-12-13 11:15:46]  *** Contents of shared directory: ***
[2025-12-13 11:15:46] total 337756
[2025-12-13 11:15:46] -rw-r--r--. 2 boinc boinc 191024721 Dec 13 06:36 ATLAS.root_0
[2025-12-13 11:15:46] -rw-r--r--. 2 boinc boinc     15847 Dec 13 06:36 start_atlas.sh
[2025-12-13 11:15:46] -rw-r--r--. 2 boinc boinc    592400 Dec 13 06:36 input.tar.gz
[2025-12-13 11:15:46] -rw-------. 1 boinc boinc 151528547 Dec 13 11:12 HITS.pool.root.1
[2025-12-13 11:15:46] -rw-------. 1 boinc boinc   2693120 Dec 13 11:15 result.tar.gz
11:15:48 (9488): run_atlas exited; CPU time 60331.005273
11:15:48 (9488): called boinc_finish(0)

</stderr_txt>
]]>

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