Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:21:27 (1546302): wrapper (7.7.26015): starting
23:21:27 (1546302): wrapper: running run_atlas (--nthreads 9)
[2025-12-11 23:21:27] Arguments: --nthreads 9
[2025-12-11 23:21:27] Threads: 9
[2025-12-11 23:21:27] Checking for CVMFS
[2025-12-11 23:21:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-11 23:21:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-11 23:21:27] Running cvmfs_config stat atlas.cern.ch
[2025-12-11 23:21:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-11 23:21:28] 2.13.2.0 6751 56899 329612 153898 3 882 27225384 40960000 26025 16776704 0 190680035 99.562 232239891 38594 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-11 23:21:28] CVMFS is ok
[2025-12-11 23:21:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-11 23:21:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-11 23:21:28] Further information can be found at the LHC@home message board.
[2025-12-11 23:21:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-11 23:21:28] Checking for apptainer binary...
[2025-12-11 23:21:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-11 23:21:28] Running /usr/bin/apptainer --version
[2025-12-11 23:21:28] apptainer version 1.4.4-1.el9
[2025-12-11 23:21:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-11 23:21:28] c-212-7.aglt2.org
[2025-12-11 23:21:28] apptainer works
[2025-12-11 23:21:28] Set ATHENA_PROC_NUMBER=9
[2025-12-11 23:21:28] Set ATHENA_CORE_NUMBER=9
[2025-12-11 23:21:28] Starting ATLAS job with PandaID=6926683490
[2025-12-11 23:21:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-12 01:12:26]  *** The last 200 lines of the pilot log: ***
[2025-12-12 01:12:26] 2025-12-12 06:11:40,335 | INFO     | extracted standard info from prmon json
[2025-12-12 01:12:26] 2025-12-12 06:11:40,335 | INFO     | extracted standard memory fields from prmon json
[2025-12-12 01:12:26] 2025-12-12 06:11:40,335 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-12 01:12:26] 2025-12-12 06:11:40,335 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-12 01:12:26] 2025-12-12 06:11:40,335 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-12 01:12:26] 2025-12-12 06:11:40,337 | INFO     | fitting pss+swap vs Time
[2025-12-12 01:12:26] 2025-12-12 06:11:40,338 | INFO     | sum of square deviations: 379828090.9906545
[2025-12-12 01:12:26] 2025-12-12 06:11:40,338 | INFO     | sum of deviations: 29176019740.5888
[2025-12-12 01:12:26] 2025-12-12 06:11:40,338 | INFO     | mean x: 1765516619.0093458
[2025-12-12 01:12:26] 2025-12-12 06:11:40,338 | INFO     | mean y: 2738331.4112149533
[2025-12-12 01:12:26] 2025-12-12 06:11:40,338 | INFO     | intersect: -135613212543.11655
[2025-12-12 01:12:26] 2025-12-12 06:11:40,339 | INFO     | chi2: 2.804969268555765
[2025-12-12 01:12:26] 2025-12-12 06:11:40,339 | INFO     | sum of square deviations: 329027443.49019575
[2025-12-12 01:12:26] 2025-12-12 06:11:40,339 | INFO     | sum of deviations: 28946904307.392178
[2025-12-12 01:12:26] 2025-12-12 06:11:40,339 | INFO     | mean x: 1765516466.509804
[2025-12-12 01:12:26] 2025-12-12 06:11:40,339 | INFO     | mean y: 2737642.6078431373
[2025-12-12 01:12:26] 2025-12-12 06:11:40,339 | INFO     | intersect: -155322409910.64575
[2025-12-12 01:12:26] 2025-12-12 06:11:40,340 | INFO     | chi2: 2.7968871354990132
[2025-12-12 01:12:26] 2025-12-12 06:11:40,340 | INFO     | current chi2=2.7968871354990132 (change=0.2881362426089298 %)
[2025-12-12 01:12:26] 2025-12-12 06:11:40,340 | INFO     | right removable region: 101
[2025-12-12 01:12:26] 2025-12-12 06:11:40,340 | INFO     | sum of square deviations: 329026833.49019575
[2025-12-12 01:12:26] 2025-12-12 06:11:40,340 | INFO     | sum of deviations: -248491549.2156899
[2025-12-12 01:12:26] 2025-12-12 06:11:40,340 | INFO     | mean x: 1765516771.509804
[2025-12-12 01:12:26] 2025-12-12 06:11:40,340 | INFO     | mean y: 2825868.7156862747
[2025-12-12 01:12:26] 2025-12-12 06:11:40,340 | INFO     | intersect: 1336200393.4163506
[2025-12-12 01:12:26] 2025-12-12 06:11:40,341 | INFO     | chi2: 0.1576582907421399
[2025-12-12 01:12:26] 2025-12-12 06:11:40,341 | INFO     | current chi2=0.1576582907421399 (change=94.37932199437908 %)
[2025-12-12 01:12:26] 2025-12-12 06:11:40,341 | INFO     | sum of square deviations: 282969850.9896903
[2025-12-12 01:12:26] 2025-12-12 06:11:40,341 | INFO     | sum of deviations: -6044004500.515465
[2025-12-12 01:12:26] 2025-12-12 06:11:40,341 | INFO     | mean x: 1765516924.0103092
[2025-12-12 01:12:26] 2025-12-12 06:11:40,341 | INFO     | mean y: 2844811.5154639175
[2025-12-12 01:12:26] 2025-12-12 06:11:40,341 | INFO     | intersect: 37712841820.50179
[2025-12-12 01:12:26] 2025-12-12 06:11:40,342 | INFO     | chi2: 0.028158684707074076
[2025-12-12 01:12:26] 2025-12-12 06:11:40,342 | INFO     | current chi2=0.028158684707074076 (change=82.13942027753593 %)
[2025-12-12 01:12:26] 2025-12-12 06:11:40,342 | INFO     | sum of square deviations: 241424580.9891305
[2025-12-12 01:12:26] 2025-12-12 06:11:40,342 | INFO     | sum of deviations: -6414588773.652174
[2025-12-12 01:12:26] 2025-12-12 06:11:40,342 | INFO     | mean x: 1765517076.5108695
[2025-12-12 01:12:26] 2025-12-12 06:11:40,344 | INFO     | mean y: 2846154.652173913
[2025-12-12 01:12:26] 2025-12-12 06:11:40,344 | INFO     | intersect: 46912178966.90509
[2025-12-12 01:12:26] 2025-12-12 06:11:40,344 | INFO     | chi2: 0.02254168988031781
[2025-12-12 01:12:26] 2025-12-12 06:11:40,345 | INFO     | current chi2=0.02254168988031781 (change=19.94764629523039 %)
[2025-12-12 01:12:26] 2025-12-12 06:11:40,345 | INFO     | left removable region: 30
[2025-12-12 01:12:26] 2025-12-12 06:11:40,345 | INFO     | sum of square deviations: 110960220.0
[2025-12-12 01:12:26] 2025-12-12 06:11:40,345 | INFO     | sum of deviations: -4526740337.999999
[2025-12-12 01:12:26] 2025-12-12 06:11:40,345 | INFO     | mean x: 1765517351.0
[2025-12-12 01:12:26] 2025-12-12 06:11:40,345 | INFO     | mean y: 2850786.732394366
[2025-12-12 01:12:26] 2025-12-12 06:11:40,345 | INFO     | intersect: 72029011245.05344
[2025-12-12 01:12:26] 2025-12-12 06:11:40,345 | INFO     | chi2: 0.013324307508589246
[2025-12-12 01:12:26] 2025-12-12 06:11:40,345 | INFO     | current memory leak: -40.80 B/s (using 71 data points, chi2=0.01)
[2025-12-12 01:12:26] 2025-12-12 06:11:40,346 | INFO     | could have reported an average CPU frequency of 2982 MHz (7 samples)
[2025-12-12 01:12:26] 2025-12-12 06:11:40,346 | INFO     | ..............................
[2025-12-12 01:12:26] 2025-12-12 06:11:40,346 | INFO     | . Timing measurements:
[2025-12-12 01:12:26] 2025-12-12 06:11:40,346 | INFO     | . get job = 0 s
[2025-12-12 01:12:26] 2025-12-12 06:11:40,346 | INFO     | . initial setup = 3 s
[2025-12-12 01:12:26] 2025-12-12 06:11:40,346 | INFO     | . payload setup = 21 s
[2025-12-12 01:12:26] 2025-12-12 06:11:40,346 | INFO     | . stage-in = 0 s
[2025-12-12 01:12:26] 2025-12-12 06:11:40,346 | INFO     | . payload execution = 6512 s
[2025-12-12 01:12:26] 2025-12-12 06:11:40,346 | INFO     | . stage-out = 1 s
[2025-12-12 01:12:26] 2025-12-12 06:11:40,346 | INFO     | . log creation = 0 s
[2025-12-12 01:12:26] 2025-12-12 06:11:40,346 | INFO     | ..............................
[2025-12-12 01:12:26] 2025-12-12 06:11:40,419 | INFO     | 
[2025-12-12 01:12:26] 2025-12-12 06:11:40,484 | INFO     | job summary report
[2025-12-12 01:12:26] 2025-12-12 06:11:40,484 | INFO     | --------------------------------------------------
[2025-12-12 01:12:26] 2025-12-12 06:11:40,484 | INFO     | PanDA job id: 6926683490
[2025-12-12 01:12:26] 2025-12-12 06:11:40,484 | INFO     | task id: 47875738
[2025-12-12 01:12:26] 2025-12-12 06:11:40,484 | INFO     | errors: (none)
[2025-12-12 01:12:26] 2025-12-12 06:11:40,484 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-12 01:12:26] 2025-12-12 06:11:40,485 | INFO     | pilot state: finished 
[2025-12-12 01:12:26] 2025-12-12 06:11:40,485 | INFO     | transexitcode: 0
[2025-12-12 01:12:26] 2025-12-12 06:11:40,485 | INFO     | exeerrorcode: 0
[2025-12-12 01:12:26] 2025-12-12 06:11:40,485 | INFO     | exeerrordiag: 
[2025-12-12 01:12:26] 2025-12-12 06:11:40,485 | INFO     | exitcode: 0
[2025-12-12 01:12:26] 2025-12-12 06:11:40,485 | INFO     | exitmsg: OK
[2025-12-12 01:12:26] 2025-12-12 06:11:40,485 | INFO     | cpuconsumptiontime: 45902 s
[2025-12-12 01:12:26] 2025-12-12 06:11:40,485 | INFO     | nevents: 400
[2025-12-12 01:12:26] 2025-12-12 06:11:40,485 | INFO     | neventsw: 0
[2025-12-12 01:12:26] 2025-12-12 06:11:40,485 | INFO     | pid: 1556686
[2025-12-12 01:12:26] 2025-12-12 06:11:40,485 | INFO     | pgrp: 1556686
[2025-12-12 01:12:26] 2025-12-12 06:11:40,485 | INFO     | corecount: 9
[2025-12-12 01:12:26] 2025-12-12 06:11:40,485 | INFO     | event service: False
[2025-12-12 01:12:26] 2025-12-12 06:11:40,486 | INFO     | sizes: {0: 2284002, 1: 2284030, 12: 2284320, 22: 2284320, 6538: 2311396, 6540: 2320394, 6542: 2320578, 6550: 2320772}
[2025-12-12 01:12:26] 2025-12-12 06:11:40,486 | INFO     | --------------------------------------------------
[2025-12-12 01:12:26] 2025-12-12 06:11:40,486 | INFO     | 
[2025-12-12 01:12:26] 2025-12-12 06:11:40,486 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-12 01:12:26] 2025-12-12 06:11:40,568 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-12 01:12:26] 2025-12-12 06:11:40,569 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-12 01:12:26] 2025-12-12 06:11:40,569 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-12 01:12:26] 2025-12-12 06:11:40,569 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-12 01:12:26] 2025-12-12 06:11:40,569 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-12 01:12:26] 2025-12-12 06:11:40,569 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-12 01:12:26] 2025-12-12 06:11:40,569 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-12 01:12:26] 2025-12-12 06:11:40,569 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-12 01:12:26] 2025-12-12 06:11:40,569 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-12 01:12:26] 2025-12-12 06:11:40,569 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-12 01:12:26] 2025-12-12 06:11:40,570 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-12 01:12:26] 2025-12-12 06:11:40,570 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-12 01:12:26] 2025-12-12 06:11:40,570 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-12 01:12:26] 2025-12-12 06:11:40,570 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-12 01:12:26] 2025-12-12 06:11:40,570 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-12 01:12:26] 2025-12-12 06:11:40,570 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-12 01:12:26] 2025-12-12 06:11:40,570 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-12 01:12:26] 2025-12-12 06:11:40,570 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-12 01:12:26] 2025-12-12 06:11:40,570 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-12 01:12:26] 2025-12-12 06:11:40,570 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-12 01:12:26] 2025-12-12 06:11:40,570 | INFO     | job 6926683490 has completed (purged errors)
[2025-12-12 01:12:26] 2025-12-12 06:11:40,571 | INFO     | overall cleanup function is called
[2025-12-12 01:12:26] 2025-12-12 06:11:41,389 | INFO     | PID=1550090 has CPU usage=16.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-12 01:12:26] 2025-12-12 06:11:41,389 | INFO     | .. there are 24 such processes running
[2025-12-12 01:12:26] 2025-12-12 06:11:41,598 | INFO     | --- collectZombieJob: --- 10, [1556686]
[2025-12-12 01:12:26] 2025-12-12 06:11:41,598 | INFO     | zombie collector waiting for pid 1556686
[2025-12-12 01:12:26] 2025-12-12 06:11:41,598 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-12 01:12:26] 2025-12-12 06:11:41,598 | INFO     | collected zombie processes
[2025-12-12 01:12:26] 2025-12-12 06:11:41,598 | INFO     | will attempt to kill all subprocesses of pid=1556686
[2025-12-12 01:12:26] 2025-12-12 06:11:42,031 | INFO     | process IDs to be killed: [1556686] (in reverse order)
[2025-12-12 01:12:26] 2025-12-12 06:11:42,164 | WARNING  | found no corresponding commands to process id(s)
[2025-12-12 01:12:26] 2025-12-12 06:11:42,164 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-12 01:12:26] 2025-12-12 06:11:42,185 | INFO     | did not find any defunct processes belonging to 1556686
[2025-12-12 01:12:26] 2025-12-12 06:11:42,209 | INFO     | did not find any defunct processes belonging to 1556686
[2025-12-12 01:12:26] 2025-12-12 06:11:42,210 | INFO     | ready for new job
[2025-12-12 01:12:26] 2025-12-12 06:11:42,210 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-12 01:12:26] 2025-12-12 06:11:42,212 | INFO     | ***************************************
[2025-12-12 01:12:26] 2025-12-12 06:11:42,212 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-12 01:12:26] 2025-12-12 06:11:42,213 | INFO     | ***************************************
[2025-12-12 01:12:26] 2025-12-12 06:11:42,213 | INFO     | 
[2025-12-12 01:12:26] 2025-12-12 06:11:42,219 | INFO     | architecture information:
[2025-12-12 01:12:26] 2025-12-12 06:11:42,220 | INFO     | executing command: cat /etc/os-release
[2025-12-12 01:12:26] 2025-12-12 06:11:42,238 | INFO     | cat /etc/os-release:
[2025-12-12 01:12:26] NAME="CentOS Linux"
[2025-12-12 01:12:26] VERSION="7 (Core)"
[2025-12-12 01:12:26] ID="centos"
[2025-12-12 01:12:26] ID_LIKE="rhel fedora"
[2025-12-12 01:12:26] VERSION_ID="7"
[2025-12-12 01:12:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-12 01:12:26] ANSI_COLOR="0;31"
[2025-12-12 01:12:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-12 01:12:26] HOME_URL="https://www.centos.org/"
[2025-12-12 01:12:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-12 01:12:26] 
[2025-12-12 01:12:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-12 01:12:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-12 01:12:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-12 01:12:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-12 01:12:26] 
[2025-12-12 01:12:26] 2025-12-12 06:11:42,238 | INFO     | ***************************************
[2025-12-12 01:12:26] 2025-12-12 06:11:42,741 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-12 01:12:26] 2025-12-12 06:11:42,763 | INFO     | sufficient remaining disk space (125972774912 B)
[2025-12-12 01:12:26] 2025-12-12 06:11:42,763 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-12 01:12:26] 2025-12-12 06:11:42,763 | INFO     | current server update state: UPDATING_FINAL
[2025-12-12 01:12:26] 2025-12-12 06:11:42,763 | INFO     | update_server=False
[2025-12-12 01:12:26] 2025-12-12 06:11:42,763 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-12 01:12:26] 2025-12-12 06:11:42,838 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-12 01:12:26] 2025-12-12 06:11:43,087 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-12 01:12:26] 2025-12-12 06:11:43,118 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-12 01:12:26] 2025-12-12 06:11:43,118 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-12 01:12:26] 2025-12-12 06:11:43,118 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-12 01:12:26] 2025-12-12 06:11:43,118 | INFO     | will abort loop
[2025-12-12 01:12:26] 2025-12-12 06:11:43,118 | INFO     | all job control threads have been joined
[2025-12-12 01:12:26] 2025-12-12 06:11:43,513 | INFO     | all payload control threads have been joined
[2025-12-12 01:12:26] 2025-12-12 06:11:43,625 | INFO     | all data control threads have been joined
[2025-12-12 01:12:26] 2025-12-12 06:11:43,769 | INFO     | [job] retrieve thread has finished
[2025-12-12 01:12:26] 2025-12-12 06:11:43,986 | INFO     | [payload] validate_pre thread has finished
[2025-12-12 01:12:26] 2025-12-12 06:11:44,046 | INFO     | [payload] execute_payloads thread has finished
[2025-12-12 01:12:26] 2025-12-12 06:11:44,112 | INFO     | [payload] failed_post thread has finished
[2025-12-12 01:12:26] 2025-12-12 06:11:44,124 | INFO     | [job] job monitor thread has finished
[2025-12-12 01:12:26] 2025-12-12 06:11:44,128 | INFO     | [job] control thread has finished
[2025-12-12 01:12:26] 2025-12-12 06:11:44,518 | INFO     | [payload] control thread has finished
[2025-12-12 01:12:26] 2025-12-12 06:11:44,562 | INFO     | [job] create_data_payload thread has finished
[2025-12-12 01:12:26] 2025-12-12 06:11:44,630 | INFO     | [data] control thread has finished
[2025-12-12 01:12:26] 2025-12-12 06:11:44,684 | INFO     | [data] copytool_in thread has finished
[2025-12-12 01:12:26] 2025-12-12 06:11:44,754 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-12 01:12:26] 2025-12-12 06:11:44,819 | INFO     | [job] validate thread has finished
[2025-12-12 01:12:26] 2025-12-12 06:11:44,843 | INFO     | [data] copytool_out thread has finished
[2025-12-12 01:12:26] 2025-12-12 06:11:45,204 | INFO     | [payload] validate_post thread has finished
[2025-12-12 01:12:26] 2025-12-12 06:11:45,433 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-12 01:12:26] 2025-12-12 06:11:46,438 | INFO     | [job] queue monitor thread has finished
[2025-12-12 01:12:26] 2025-12-12 06:11:47,105 | INFO     | [data] queue_monitor thread has finished
[2025-12-12 01:12:26] 2025-12-12 06:12:05,213 | INFO     | [monitor] cgroup control has ended
[2025-12-12 01:12:26] 2025-12-12 06:12:06,219 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140442392110912)>', '<ExcThread(monitor, started 140442033170176)>']
[2025-12-12 01:12:26] 2025-12-12 06:12:11,246 | INFO     | all workflow threads have been joined
[2025-12-12 01:12:26] 2025-12-12 06:12:11,246 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-12 01:12:26] 2025-12-12 06:12:11,246 | INFO     | traces error code: 0
[2025-12-12 01:12:26] 2025-12-12 06:12:11,247 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-12 01:12:26] 2025-12-12 06:12:14,096 | INFO     | PID=1550090 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-12 01:12:26] 2025-12-12 06:12:14,097 | INFO     | .. there are 24 such processes running
[2025-12-12 01:12:26] 2025-12-12 06:12:14,098 | INFO     | found 0 job(s) in 20 queues
[2025-12-12 01:12:26] 2025-12-12 06:12:14,098 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-12 01:12:26] 2025-12-12 06:12:14,098 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-12 01:12:26] 2025-12-12 06:12:14,099 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-12 01:12:26] 2025-12-12 06:12:14,099 | CRITICAL | thread 'MainThread' is not alive
[2025-12-12 01:12:26] 2025-12-12 06:12:14,099 | INFO     | [monitor] control thread has ended
[2025-12-12 01:12:26] 2025-12-12 06:12:14,334 [wrapper] ==== pilot stdout END ====
[2025-12-12 01:12:26] 2025-12-12 06:12:14,336 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-12 01:12:26] 2025-12-12 06:12:14,338 [wrapper] pilotpid: 1550090
[2025-12-12 01:12:26] 2025-12-12 06:12:14,339 [wrapper] Pilot exit status: 0
[2025-12-12 01:12:26] 2025-12-12 06:12:14,348 [wrapper] pandaids: 6926683490
[2025-12-12 01:12:26] 2025-12-12 06:12:14,430 [wrapper] cleanup supervisor_pilot 1829095 1550091
[2025-12-12 01:12:26] 2025-12-12 06:12:14,433 [wrapper] Test setup, not cleaning
[2025-12-12 01:12:26] 2025-12-12 06:12:14,435 [wrapper] apfmon messages muted
[2025-12-12 01:12:26] 2025-12-12 06:12:14,437 [wrapper] ==== wrapper stdout END ====
[2025-12-12 01:12:26] 2025-12-12 06:12:14,440 [wrapper] ==== wrapper stderr END ====
[2025-12-12 01:12:26]  *** Error codes and diagnostics ***
[2025-12-12 01:12:26]     "exeErrorCode": 0,
[2025-12-12 01:12:26]     "exeErrorDiag": "",
[2025-12-12 01:12:26]     "pilotErrorCode": 0,
[2025-12-12 01:12:26]     "pilotErrorDiag": "",
[2025-12-12 01:12:26]  *** Listing of results directory ***
[2025-12-12 01:12:26] total 499564
[2025-12-12 01:12:26] -rw-r--r--. 1 boincer umatlas    579449 Dec 11 05:23 pilot3.tar.gz
[2025-12-12 01:12:26] -rwx------. 1 boincer umatlas     36292 Dec 11 05:42 runpilot2-wrapper.sh
[2025-12-12 01:12:26] -rw-r--r--. 1 boincer umatlas      5112 Dec 11 05:42 queuedata.json
[2025-12-12 01:12:26] -rw-r--r--. 1 boincer umatlas       100 Dec 11 23:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-12 01:12:26] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 11 23:21 run_atlas
[2025-12-12 01:12:26] -rw-r--r--. 1 boincer umatlas       105 Dec 11 23:21 job.xml
[2025-12-12 01:12:26] -rw-r--r--. 2 boincer umatlas 296371984 Dec 11 23:21 EVNT.47875734._000004.pool.root.1
[2025-12-12 01:12:26] -rw-r--r--. 2 boincer umatlas     15847 Dec 11 23:21 start_atlas.sh
[2025-12-12 01:12:26] drwxrwx--x. 2 boincer umatlas      4096 Dec 11 23:21 shared
[2025-12-12 01:12:26] -rw-r--r--. 2 boincer umatlas    592372 Dec 11 23:21 input.tar.gz
[2025-12-12 01:12:26] -rw-r--r--. 1 boincer umatlas         0 Dec 11 23:21 boinc_lockfile
[2025-12-12 01:12:26] -rw-r--r--. 1 boincer umatlas      2538 Dec 11 23:21 pandaJob.out
[2025-12-12 01:12:26] -rw-------. 1 boincer umatlas        57 Dec 11 23:21 setup.sh.local
[2025-12-12 01:12:26] -rw-------. 1 boincer umatlas    990044 Dec 11 23:21 agis_schedconf.cvmfs.json
[2025-12-12 01:12:26] -rw-------. 1 boincer umatlas   1516240 Dec 11 23:21 agis_ddmendpoints.agis.ALL.json
[2025-12-12 01:12:26] drwx------. 5 boincer umatlas      4096 Dec 11 23:21 pilot3
[2025-12-12 01:12:26] -rw-------. 1 boincer umatlas 208680823 Dec 12 01:10 HITS.47875738._000062.pool.root.1
[2025-12-12 01:12:26] -rw-r--r--. 1 boincer umatlas       529 Dec 12 01:11 boinc_task_state.xml
[2025-12-12 01:12:26] -rw-r--r--. 1 boincer umatlas      6946 Dec 12 01:11 init_data.xml
[2025-12-12 01:12:26] -rw-------. 1 boincer umatlas      1035 Dec 12 01:11 memory_monitor_summary.json
[2025-12-12 01:12:26] -rw-------. 1 boincer umatlas    369622 Dec 12 01:11 log.47875738._000062.job.log.tgz.1
[2025-12-12 01:12:26] -rw-------. 1 boincer umatlas      7763 Dec 12 01:11 heartbeat.json
[2025-12-12 01:12:26] -rw-------. 1 boincer umatlas        95 Dec 12 01:12 pilot_heartbeat.json
[2025-12-12 01:12:26] -rw-------. 1 boincer umatlas       893 Dec 12 01:12 pilotlog.txt
[2025-12-12 01:12:26] -rw-------. 1 boincer umatlas    925304 Dec 12 01:12 log.47875738._000062.job.log.1
[2025-12-12 01:12:26] -rw-------. 1 boincer umatlas       357 Dec 12 01:12 output.list
[2025-12-12 01:12:26] -rw-r--r--. 1 boincer umatlas       620 Dec 12 01:12 runtime_log
[2025-12-12 01:12:26] -rw-------. 1 boincer umatlas   1310720 Dec 12 01:12 result.tar.gz
[2025-12-12 01:12:26] -rw-r--r--. 1 boincer umatlas      9337 Dec 12 01:12 runtime_log.err
[2025-12-12 01:12:26] -rw-------. 1 boincer umatlas       655 Dec 12 01:12 fDZNDmpItn8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbnQKDmG8elfn.diag
[2025-12-12 01:12:26] -rw-r--r--. 1 boincer umatlas        27 Dec 12 01:12 wrapper_checkpoint.txt
[2025-12-12 01:12:26] -rw-r--r--. 1 boincer umatlas      8192 Dec 12 01:12 boinc_mmap_file
[2025-12-12 01:12:26] -rw-r--r--. 1 boincer umatlas     21181 Dec 12 01:12 stderr.txt
[2025-12-12 01:12:26] HITS file was successfully produced:
[2025-12-12 01:12:26] -rw-------. 1 boincer umatlas 208680823 Dec 12 01:10 shared/HITS.pool.root.1
[2025-12-12 01:12:26]  *** Contents of shared directory: ***
[2025-12-12 01:12:26] total 495104
[2025-12-12 01:12:26] -rw-r--r--. 2 boincer umatlas 296371984 Dec 11 23:21 ATLAS.root_0
[2025-12-12 01:12:26] -rw-r--r--. 2 boincer umatlas     15847 Dec 11 23:21 start_atlas.sh
[2025-12-12 01:12:26] -rw-r--r--. 2 boincer umatlas    592372 Dec 11 23:21 input.tar.gz
[2025-12-12 01:12:26] -rw-------. 1 boincer umatlas 208680823 Dec 12 01:10 HITS.pool.root.1
[2025-12-12 01:12:26] -rw-------. 1 boincer umatlas   1310720 Dec 12 01:12 result.tar.gz
01:12:28 (1546302): run_atlas exited; CPU time 46110.483059
01:12:28 (1546302): called boinc_finish(0)

</stderr_txt>
]]>

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