Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:49:29 (18000): wrapper (7.7.26015): starting
16:49:29 (18000): wrapper: running run_atlas (--nthreads 8)
[2025-12-11 16:49:29] Arguments: --nthreads 8
[2025-12-11 16:49:29] Threads: 8
[2025-12-11 16:49:29] Checking for CVMFS
[2025-12-11 16:49:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-11 16:49:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-11 16:49:33] Running cvmfs_config stat atlas.cern.ch
[2025-12-11 16:49:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-11 16:49:34] 2.11.2.0 1415 105990 144872 153891 0 11 20516785 25165824 4209 130560 313 32133884 99.834 24008789 1813 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-11 16:49:34] CVMFS is ok
[2025-12-11 16:49:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-11 16:49:34] Checking for apptainer binary...
[2025-12-11 16:49:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-11 16:49:34] Running /usr/bin/apptainer --version
[2025-12-11 16:49:34] apptainer version 1.3.2-1.el7
[2025-12-11 16:49:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-11 16:49:39] cg-vwn377.simple-grid.lan
[2025-12-11 16:49:39] apptainer works
[2025-12-11 16:49:39] Set ATHENA_PROC_NUMBER=8
[2025-12-11 16:49:39] Set ATHENA_CORE_NUMBER=8
[2025-12-11 16:49:39] Starting ATLAS job with PandaID=6926945756
[2025-12-11 16:49:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-12 08:03:46]  *** The last 200 lines of the pilot log: ***
[2025-12-12 08:03:46] 2025-12-12 07:02:33,177 | INFO     | sum of square deviations: 213482478959.27695
[2025-12-12 08:03:46] 2025-12-12 07:02:33,216 | INFO     | sum of deviations: 2181013674371.7354
[2025-12-12 08:03:46] 2025-12-12 07:02:33,217 | INFO     | mean x: 1765495904.9558325
[2025-12-12 08:03:46] 2025-12-12 07:02:33,217 | INFO     | mean y: 3260254.711211778
[2025-12-12 08:03:46] 2025-12-12 07:02:33,217 | INFO     | intersect: -18033679964.118137
[2025-12-12 08:03:46] 2025-12-12 07:02:33,218 | INFO     | chi2: 15.18010053660205
[2025-12-12 08:03:46] 2025-12-12 07:02:33,219 | INFO     | sum of square deviations: 209876705972.18304
[2025-12-12 08:03:46] 2025-12-12 07:02:33,256 | INFO     | sum of deviations: 2505511607996.137
[2025-12-12 08:03:46] 2025-12-12 07:02:33,256 | INFO     | mean x: 1765495752.4612756
[2025-12-12 08:03:46] 2025-12-12 07:02:33,256 | INFO     | mean y: 3273973.2687927107
[2025-12-12 08:03:46] 2025-12-12 07:02:33,256 | INFO     | intersect: -21073243695.375603
[2025-12-12 08:03:46] 2025-12-12 07:02:33,257 | INFO     | chi2: 12.201057259920155
[2025-12-12 08:03:46] 2025-12-12 07:02:33,258 | INFO     | current chi2=12.201057259920155 (change=19.624661045550166 %)
[2025-12-12 08:03:46] 2025-12-12 07:02:33,258 | INFO     | right removable region: 877
[2025-12-12 08:03:46] 2025-12-12 07:02:33,259 | INFO     | sum of square deviations: 209876191132.18298
[2025-12-12 08:03:46] 2025-12-12 07:02:33,279 | INFO     | sum of deviations: 1745499147125.8389
[2025-12-12 08:03:46] 2025-12-12 07:02:33,279 | INFO     | mean x: 1765496057.4612756
[2025-12-12 08:03:46] 2025-12-12 07:02:33,280 | INFO     | mean y: 3278671.6423690207
[2025-12-12 08:03:46] 2025-12-12 07:02:33,280 | INFO     | intersect: -14680006011.239107
[2025-12-12 08:03:46] 2025-12-12 07:02:33,281 | INFO     | chi2: 9.99273403006822
[2025-12-12 08:03:46] 2025-12-12 07:02:33,281 | INFO     | current chi2=9.99273403006822 (change=34.17214855742307 %)
[2025-12-12 08:03:46] 2025-12-12 07:02:33,283 | INFO     | sum of square deviations: 206310741280.03702
[2025-12-12 08:03:46] 2025-12-12 07:02:33,302 | INFO     | sum of deviations: 1371609095467.3572
[2025-12-12 08:03:46] 2025-12-12 07:02:33,303 | INFO     | mean x: 1765496209.9667811
[2025-12-12 08:03:46] 2025-12-12 07:02:33,303 | INFO     | mean y: 3294660.7365406645
[2025-12-12 08:03:46] 2025-12-12 07:02:33,303 | INFO     | intersect: -11734197263.237751
[2025-12-12 08:03:46] 2025-12-12 07:02:33,304 | INFO     | chi2: 6.335213379178516
[2025-12-12 08:03:46] 2025-12-12 07:02:33,304 | INFO     | current chi2=6.335213379178516 (change=36.60180126764301 %)
[2025-12-12 08:03:46] 2025-12-12 07:02:33,306 | INFO     | sum of square deviations: 202785896840.3366
[2025-12-12 08:03:46] 2025-12-12 07:02:33,315 | INFO     | monitor loop #3791: job 0:6926945756 is in state 'finished'
[2025-12-12 08:03:46] 2025-12-12 07:02:33,315 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-12 08:03:46] 2025-12-12 07:02:33,327 | INFO     | sum of deviations: 1046317496226.7872
[2025-12-12 08:03:46] 2025-12-12 07:02:33,327 | INFO     | mean x: 1765496362.4723501
[2025-12-12 08:03:46] 2025-12-12 07:02:33,327 | INFO     | mean y: 3308726.1785714286
[2025-12-12 08:03:46] 2025-12-12 07:02:33,327 | INFO     | intersect: -9106149881.951445
[2025-12-12 08:03:46] 2025-12-12 07:02:33,328 | INFO     | chi2: 3.574852151491265
[2025-12-12 08:03:46] 2025-12-12 07:02:33,329 | INFO     | current chi2=3.574852151491265 (change=43.5717167279563 %)
[2025-12-12 08:03:46] 2025-12-12 07:02:33,330 | INFO     | sum of square deviations: 199301584097.43887
[2025-12-12 08:03:46] 2025-12-12 07:02:33,352 | INFO     | sum of deviations: 972847487579.5905
[2025-12-12 08:03:46] 2025-12-12 07:02:33,353 | INFO     | mean x: 1765496514.9745076
[2025-12-12 08:03:46] 2025-12-12 07:02:33,353 | INFO     | mean y: 3311941.390498262
[2025-12-12 08:03:46] 2025-12-12 07:02:33,353 | INFO     | intersect: -8614576655.439493
[2025-12-12 08:03:46] 2025-12-12 07:02:33,354 | INFO     | chi2: 3.495686077618783
[2025-12-12 08:03:46] 2025-12-12 07:02:33,354 | INFO     | current chi2=3.495686077618783 (change=2.21452721728526 %)
[2025-12-12 08:03:46] 2025-12-12 07:02:33,354 | INFO     | left removable region: 40
[2025-12-12 08:03:46] 2025-12-12 07:02:33,356 | INFO     | sum of square deviations: 181825864036.65494
[2025-12-12 08:03:46] 2025-12-12 07:02:33,375 | INFO     | sum of deviations: 1153192151817.669
[2025-12-12 08:03:46] 2025-12-12 07:02:33,375 | INFO     | mean x: 1765496941.9796894
[2025-12-12 08:03:46] 2025-12-12 07:02:33,375 | INFO     | mean y: 3335756.56869773
[2025-12-12 08:03:46] 2025-12-12 07:02:33,375 | INFO     | intersect: -11193955829.729698
[2025-12-12 08:03:46] 2025-12-12 07:02:33,376 | INFO     | chi2: 0.15604023888487914
[2025-12-12 08:03:46] 2025-12-12 07:02:33,377 | INFO     | current memory leak: 6.34 B/s (using 837 data points, chi2=0.16)
[2025-12-12 08:03:46] 2025-12-12 07:02:33,378 | INFO     | could have reported an average CPU frequency of 1999 MHz (32 samples)
[2025-12-12 08:03:46] 2025-12-12 07:02:33,378 | INFO     | ..............................
[2025-12-12 08:03:46] 2025-12-12 07:02:33,378 | INFO     | . Timing measurements:
[2025-12-12 08:03:46] 2025-12-12 07:02:33,378 | INFO     | . get job = 0 s
[2025-12-12 08:03:46] 2025-12-12 07:02:33,378 | INFO     | . initial setup = 6 s
[2025-12-12 08:03:46] 2025-12-12 07:02:33,378 | INFO     | . payload setup = 277 s
[2025-12-12 08:03:46] 2025-12-12 07:02:33,378 | INFO     | . stage-in = 0 s
[2025-12-12 08:03:46] 2025-12-12 07:02:33,378 | INFO     | . payload execution = 54019 s
[2025-12-12 08:03:46] 2025-12-12 07:02:33,379 | INFO     | . stage-out = 3 s
[2025-12-12 08:03:46] 2025-12-12 07:02:33,379 | INFO     | . log creation = 1 s
[2025-12-12 08:03:46] 2025-12-12 07:02:33,379 | INFO     | ..............................
[2025-12-12 08:03:46] 2025-12-12 07:02:33,491 | INFO     | 
[2025-12-12 08:03:46] 2025-12-12 07:02:33,491 | INFO     | job summary report
[2025-12-12 08:03:46] 2025-12-12 07:02:33,491 | INFO     | --------------------------------------------------
[2025-12-12 08:03:46] 2025-12-12 07:02:33,491 | INFO     | PanDA job id: 6926945756
[2025-12-12 08:03:46] 2025-12-12 07:02:33,491 | INFO     | task id: 47866640
[2025-12-12 08:03:46] 2025-12-12 07:02:33,491 | INFO     | errors: (none)
[2025-12-12 08:03:46] 2025-12-12 07:02:33,491 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-12 08:03:46] 2025-12-12 07:02:33,492 | INFO     | pilot state: finished 
[2025-12-12 08:03:46] 2025-12-12 07:02:33,492 | INFO     | transexitcode: 0
[2025-12-12 08:03:46] 2025-12-12 07:02:33,492 | INFO     | exeerrorcode: 0
[2025-12-12 08:03:46] 2025-12-12 07:02:33,492 | INFO     | exeerrordiag: 
[2025-12-12 08:03:46] 2025-12-12 07:02:33,492 | INFO     | exitcode: 0
[2025-12-12 08:03:46] 2025-12-12 07:02:33,492 | INFO     | exitmsg: OK
[2025-12-12 08:03:46] 2025-12-12 07:02:33,492 | INFO     | cpuconsumptiontime: 200261 s
[2025-12-12 08:03:46] 2025-12-12 07:02:33,492 | INFO     | nevents: 1000
[2025-12-12 08:03:46] 2025-12-12 07:02:33,492 | INFO     | neventsw: 0
[2025-12-12 08:03:46] 2025-12-12 07:02:33,492 | INFO     | pid: 29329
[2025-12-12 08:03:46] 2025-12-12 07:02:33,492 | INFO     | pgrp: 29329
[2025-12-12 08:03:46] 2025-12-12 07:02:33,492 | INFO     | corecount: 8
[2025-12-12 08:03:46] 2025-12-12 07:02:33,493 | INFO     | event service: False
[2025-12-12 08:03:46] 2025-12-12 07:02:33,493 | INFO     | sizes: {0: 2284458, 1: 2284657, 12: 2284657, 23: 2284685, 33: 2284713, 44: 2284769, 55: 2284925, 65: 2284953, 76: 2284981, 87: 2285037, 89: 2285327, 98: 2285635, 5
[2025-12-12 08:03:46] 2025-12-12 07:02:33,493 | INFO     | --------------------------------------------------
[2025-12-12 08:03:46] 2025-12-12 07:02:33,493 | INFO     | 
[2025-12-12 08:03:46] 2025-12-12 07:02:33,493 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-12-12 08:03:46] 2025-12-12 07:02:34,073 | INFO     | time since job start (54574s) is within the limit (174528.0s)
[2025-12-12 08:03:46] 2025-12-12 07:02:34,184 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-12 08:03:46] 2025-12-12 07:02:34,185 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-12 08:03:46] 2025-12-12 07:02:34,185 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-12 08:03:46] 2025-12-12 07:02:34,185 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-12 08:03:46] 2025-12-12 07:02:34,185 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-12 08:03:46] 2025-12-12 07:02:34,185 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-12 08:03:46] 2025-12-12 07:02:34,185 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-12 08:03:46] 2025-12-12 07:02:34,185 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-12 08:03:46] 2025-12-12 07:02:34,185 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-12 08:03:46] 2025-12-12 07:02:34,185 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-12 08:03:46] 2025-12-12 07:02:34,185 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-12 08:03:46] 2025-12-12 07:02:34,186 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-12 08:03:46] 2025-12-12 07:02:34,186 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-12 08:03:46] 2025-12-12 07:02:34,186 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-12 08:03:46] 2025-12-12 07:02:34,186 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-12 08:03:46] 2025-12-12 07:02:34,186 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-12 08:03:46] 2025-12-12 07:02:34,186 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-12 08:03:46] 2025-12-12 07:02:34,186 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-12 08:03:46] 2025-12-12 07:02:34,186 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-12 08:03:46] 2025-12-12 07:02:34,186 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-12 08:03:46] 2025-12-12 07:02:34,187 | INFO     | job 6926945756 has completed (purged errors)
[2025-12-12 08:03:46] 2025-12-12 07:02:34,187 | INFO     | overall cleanup function is called
[2025-12-12 08:03:46] 2025-12-12 07:02:35,207 | INFO     | --- collectZombieJob: --- 10, [29329]
[2025-12-12 08:03:46] 2025-12-12 07:02:35,207 | INFO     | zombie collector waiting for pid 29329
[2025-12-12 08:03:46] 2025-12-12 07:02:35,207 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-12 08:03:46] 2025-12-12 07:02:35,207 | INFO     | collected zombie processes
[2025-12-12 08:03:46] 2025-12-12 07:02:35,207 | INFO     | will attempt to kill all subprocesses of pid=29329
[2025-12-12 08:03:46] 2025-12-12 07:02:35,332 | INFO     | process IDs to be killed: [29329] (in reverse order)
[2025-12-12 08:03:46] 2025-12-12 07:02:35,947 | WARNING  | found no corresponding commands to process id(s)
[2025-12-12 08:03:46] 2025-12-12 07:02:35,947 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-12 08:03:46] 2025-12-12 07:02:35,950 | INFO     | did not find any defunct processes belonging to 29329
[2025-12-12 08:03:46] 2025-12-12 07:02:35,953 | INFO     | did not find any defunct processes belonging to 29329
[2025-12-12 08:03:46] 2025-12-12 07:02:35,954 | INFO     | ready for new job
[2025-12-12 08:03:46] 2025-12-12 07:02:35,954 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-12 08:03:46] 2025-12-12 07:02:35,958 | INFO     | ***************************************
[2025-12-12 08:03:46] 2025-12-12 07:02:35,958 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-12 08:03:46] 2025-12-12 07:02:35,958 | INFO     | ***************************************
[2025-12-12 08:03:46] 2025-12-12 07:02:35,958 | INFO     | 
[2025-12-12 08:03:46] 2025-12-12 07:02:35,959 | INFO     | pilot is running in a VM
[2025-12-12 08:03:46] 2025-12-12 07:02:35,959 | INFO     | architecture information:
[2025-12-12 08:03:46] 2025-12-12 07:02:35,970 | INFO     | executing command: cat /etc/os-release
[2025-12-12 08:03:46] 2025-12-12 07:02:36,161 | INFO     | cat /etc/os-release:
[2025-12-12 08:03:46] NAME="CentOS Linux"
[2025-12-12 08:03:46] VERSION="7 (Core)"
[2025-12-12 08:03:46] ID="centos"
[2025-12-12 08:03:46] ID_LIKE="rhel fedora"
[2025-12-12 08:03:46] VERSION_ID="7"
[2025-12-12 08:03:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-12 08:03:46] ANSI_COLOR="0;31"
[2025-12-12 08:03:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-12 08:03:46] HOME_URL="https://www.centos.org/"
[2025-12-12 08:03:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-12 08:03:46] 
[2025-12-12 08:03:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-12 08:03:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-12 08:03:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-12 08:03:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-12 08:03:46] 
[2025-12-12 08:03:46] 2025-12-12 07:02:36,162 | INFO     | ***************************************
[2025-12-12 08:03:46] 2025-12-12 07:02:36,665 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-12-12 08:03:46] 2025-12-12 07:02:36,860 | INFO     | sufficient remaining disk space (496281583616 B)
[2025-12-12 08:03:46] 2025-12-12 07:02:36,861 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-12 08:03:46] 2025-12-12 07:02:36,861 | INFO     | current server update state: UPDATING_FINAL
[2025-12-12 08:03:46] 2025-12-12 07:02:36,861 | INFO     | update_server=False
[2025-12-12 08:03:46] 2025-12-12 07:02:36,861 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-12 08:03:46] 2025-12-12 07:02:36,861 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-12 08:03:46] 2025-12-12 07:02:36,862 | INFO     | aborting loop
[2025-12-12 08:03:46] 2025-12-12 07:02:36,862 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-12 08:03:46] 2025-12-12 07:02:36,869 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-12 08:03:46] 2025-12-12 07:02:37,072 | INFO     | all data control threads have been joined
[2025-12-12 08:03:46] 2025-12-12 07:02:37,690 | INFO     | all job control threads have been joined
[2025-12-12 08:03:46] 2025-12-12 07:02:37,867 | INFO     | [job] retrieve thread has finished
[2025-12-12 08:03:46] 2025-12-12 07:02:37,868 | INFO     | [job] job monitor thread has finished
[2025-12-12 08:03:46] 2025-12-12 07:02:38,078 | INFO     | [data] control thread has finished
[2025-12-12 08:03:46] 2025-12-12 07:02:38,126 | INFO     | [job] validate thread has finished
[2025-12-12 08:03:46] 2025-12-12 07:02:38,150 | INFO     | [data] copytool_in thread has finished
[2025-12-12 08:03:46] 2025-12-12 07:02:38,161 | INFO     | all payload control threads have been joined
[2025-12-12 08:03:46] 2025-12-12 07:02:38,353 | INFO     | [payload] validate_post thread has finished
[2025-12-12 08:03:46] 2025-12-12 07:02:38,506 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-12 08:03:46] 2025-12-12 07:02:38,507 | INFO     | [payload] failed_post thread has finished
[2025-12-12 08:03:46] 2025-12-12 07:02:38,521 | INFO     | [payload] execute_payloads thread has finished
[2025-12-12 08:03:46] 2025-12-12 07:02:38,538 | INFO     | [job] create_data_payload thread has finished
[2025-12-12 08:03:46] 2025-12-12 07:02:38,696 | INFO     | [job] control thread has finished
[2025-12-12 08:03:46] 2025-12-12 07:02:38,726 | INFO     | [payload] validate_pre thread has finished
[2025-12-12 08:03:46] 2025-12-12 07:02:38,845 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-12 08:03:46] 2025-12-12 07:02:38,869 | INFO     | [data] copytool_out thread has finished
[2025-12-12 08:03:46] 2025-12-12 07:02:39,168 | INFO     | [payload] control thread has finished
[2025-12-12 08:03:46] 2025-12-12 07:02:39,512 | INFO     | [job] queue monitor thread has finished
[2025-12-12 08:03:46] 2025-12-12 07:02:40,879 | INFO     | [data] queue_monitor thread has finished
[2025-12-12 08:03:46] 2025-12-12 07:03:07,263 | INFO     | PID=22079 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-12 08:03:46] 2025-12-12 07:03:07,263 | INFO     | .. there are 9 such processes running
[2025-12-12 08:03:46] 2025-12-12 07:03:07,264 | INFO     | found 0 job(s) in 20 queues
[2025-12-12 08:03:46] 2025-12-12 07:03:07,264 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-12 08:03:46] 2025-12-12 07:03:07,264 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-12 08:03:46] 2025-12-12 07:03:35,476 | INFO     | [monitor] cgroup control has ended
[2025-12-12 08:03:46] 2025-12-12 07:03:37,059 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139896914773824)>', '<ExcThread(monitor, started 139896337458944)>']
[2025-12-12 08:03:46] 2025-12-12 07:03:37,443 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-12 08:03:46] 2025-12-12 07:03:37,443 | INFO     | [monitor] control thread has ended
[2025-12-12 08:03:46] 2025-12-12 07:03:42,085 | INFO     | all workflow threads have been joined
[2025-12-12 08:03:46] 2025-12-12 07:03:42,085 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-12 08:03:46] 2025-12-12 07:03:42,085 | INFO     | traces error code: 0
[2025-12-12 08:03:46] 2025-12-12 07:03:42,086 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-12 08:03:46] 2025-12-12 07:03:42,407 [wrapper] ==== pilot stdout END ====
[2025-12-12 08:03:46] 2025-12-12 07:03:42,481 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-12 08:03:46] 2025-12-12 07:03:42,535 [wrapper] pilotpid: 22079
[2025-12-12 08:03:46] 2025-12-12 07:03:42,632 [wrapper] Pilot exit status: 0
[2025-12-12 08:03:46] 2025-12-12 07:03:42,940 [wrapper] pandaids: 6926945756
[2025-12-12 08:03:46] 2025-12-12 07:03:43,793 [wrapper] cleanup supervisor_pilot 15402 22080
[2025-12-12 08:03:46] 2025-12-12 07:03:43,887 [wrapper] Test setup, not cleaning
[2025-12-12 08:03:46] 2025-12-12 07:03:43,976 [wrapper] apfmon messages muted
[2025-12-12 08:03:46] 2025-12-12 07:03:44,067 [wrapper] ==== wrapper stdout END ====
[2025-12-12 08:03:46] 2025-12-12 07:03:44,144 [wrapper] ==== wrapper stderr END ====
[2025-12-12 08:03:46]  *** Error codes and diagnostics ***
[2025-12-12 08:03:46]     "exeErrorCode": 0,
[2025-12-12 08:03:46]     "exeErrorDiag": "",
[2025-12-12 08:03:46]     "pilotErrorCode": 0,
[2025-12-12 08:03:46]     "pilotErrorDiag": "",
[2025-12-12 08:03:46]  *** Listing of results directory ***
[2025-12-12 08:03:46] total 939000
[2025-12-12 08:03:46] -rw-r--r--. 1 boinc boinc    579449 Dec 11 16:27 pilot3.tar.gz
[2025-12-12 08:03:46] -rw-r--r--. 1 boinc boinc      5112 Dec 11 16:45 queuedata.json
[2025-12-12 08:03:46] -rwx------. 1 boinc boinc     36322 Dec 11 16:47 runpilot2-wrapper.sh
[2025-12-12 08:03:46] -rw-r--r--. 1 boinc boinc       100 Dec 11 16:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-12 08:03:46] -rwxr-xr-x. 1 boinc boinc      7986 Dec 11 16:49 run_atlas
[2025-12-12 08:03:46] -rw-r--r--. 1 boinc boinc       105 Dec 11 16:49 job.xml
[2025-12-12 08:03:46] -rw-r--r--. 1 boinc boinc      6392 Dec 11 16:49 init_data.xml
[2025-12-12 08:03:46] -rw-r--r--. 2 boinc boinc 326452608 Dec 11 16:49 EVNT.47866638._000024.pool.root.1
[2025-12-12 08:03:46] -rw-r--r--. 2 boinc boinc     15847 Dec 11 16:49 start_atlas.sh
[2025-12-12 08:03:46] drwxrwx--x. 2 boinc boinc        68 Dec 11 16:49 shared
[2025-12-12 08:03:46] -rw-r--r--. 2 boinc boinc    592618 Dec 11 16:49 input.tar.gz
[2025-12-12 08:03:46] -rw-r--r--. 1 boinc boinc         0 Dec 11 16:49 boinc_lockfile
[2025-12-12 08:03:46] -rw-r--r--. 1 boinc boinc      2897 Dec 11 16:49 pandaJob.out
[2025-12-12 08:03:46] -rw-------. 1 boinc boinc    990029 Dec 11 16:52 agis_schedconf.cvmfs.json
[2025-12-12 08:03:46] drwx------. 5 boinc boinc      4096 Dec 11 16:53 pilot3
[2025-12-12 08:03:46] -rw-r--r--. 1 boinc boinc       533 Dec 12 07:52 boinc_task_state.xml
[2025-12-12 08:03:46] -rw-------. 1 boinc boinc 612097468 Dec 12 08:00 HITS.47866640._000235.pool.root.1
[2025-12-12 08:03:46] -rw-------. 1 boinc boinc      1028 Dec 12 08:01 memory_monitor_summary.json
[2025-12-12 08:03:46] -rw-------. 1 boinc boinc   1516240 Dec 12 08:01 agis_ddmendpoints.agis.ALL.json
[2025-12-12 08:03:46] -rw-------. 1 boinc boinc   2175740 Dec 12 08:01 log.47866640._000235.job.log.tgz.1
[2025-12-12 08:03:46] -rw-------. 1 boinc boinc     27796 Dec 12 08:02 heartbeat.json
[2025-12-12 08:03:46] -rw-------. 1 boinc boinc        95 Dec 12 08:03 pilot_heartbeat.json
[2025-12-12 08:03:46] -rw-r--r--. 1 boinc boinc      8192 Dec 12 08:03 boinc_mmap_file
[2025-12-12 08:03:46] -rw-r--r--. 1 boinc boinc        29 Dec 12 08:03 wrapper_checkpoint.txt
[2025-12-12 08:03:46] -rw-------. 1 boinc boinc      4884 Dec 12 08:03 pilotlog.txt
[2025-12-12 08:03:46] -rw-------. 1 boinc boinc   7346664 Dec 12 08:03 log.47866640._000235.job.log.1
[2025-12-12 08:03:46] -rw-------. 1 boinc boinc       353 Dec 12 08:03 output.list
[2025-12-12 08:03:46] -rw-r--r--. 1 boinc boinc       620 Dec 12 08:03 runtime_log
[2025-12-12 08:03:46] -rw-------. 1 boinc boinc   9564160 Dec 12 08:03 result.tar.gz
[2025-12-12 08:03:46] -rw-------. 1 boinc boinc       661 Dec 12 08:03 zRLODmO4xn8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmk4QKDm83AYHm.diag
[2025-12-12 08:03:46] -rw-r--r--. 1 boinc boinc      8817 Dec 12 08:03 runtime_log.err
[2025-12-12 08:03:46] -rw-r--r--. 1 boinc boinc     20801 Dec 12 08:03 stderr.txt
[2025-12-12 08:03:46] HITS file was successfully produced:
[2025-12-12 08:03:46] -rw-------. 1 boinc boinc 612097468 Dec 12 08:00 shared/HITS.pool.root.1
[2025-12-12 08:03:46]  *** Contents of shared directory: ***
[2025-12-12 08:03:46] total 926492
[2025-12-12 08:03:46] -rw-r--r--. 2 boinc boinc 326452608 Dec 11 16:49 ATLAS.root_0
[2025-12-12 08:03:46] -rw-r--r--. 2 boinc boinc     15847 Dec 11 16:49 start_atlas.sh
[2025-12-12 08:03:46] -rw-r--r--. 2 boinc boinc    592618 Dec 11 16:49 input.tar.gz
[2025-12-12 08:03:46] -rw-------. 1 boinc boinc 612097468 Dec 12 08:00 HITS.pool.root.1
[2025-12-12 08:03:46] -rw-------. 1 boinc boinc   9564160 Dec 12 08:03 result.tar.gz
08:03:48 (18000): run_atlas exited; CPU time 200549.432062
08:03:48 (18000): called boinc_finish(0)

</stderr_txt>
]]>

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