Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:06:03 (1422731): wrapper (7.7.26015): starting
16:06:03 (1422731): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 16:06:03] Arguments: --nthreads 4
[2025-12-16 16:06:03] Threads: 4
[2025-12-16 16:06:03] Checking for CVMFS
[2025-12-16 16:06:03] No cvmfs_config command found, will try listing directly
[2025-12-16 16:06:03] CVMFS is ok
[2025-12-16 16:06:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 16:06:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 16:06:03] Further information can be found at the LHC@home message board.
[2025-12-16 16:06:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 16:06:03] Checking for apptainer binary...
[2025-12-16 16:06:03] which: no apptainer in ((null))
[2025-12-16 16:06:03] apptainer is not installed, using version from CVMFS
[2025-12-16 16:06:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 16:06:03] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2025-12-16 16:06:03] apptainer works
[2025-12-16 16:06:03] Set ATHENA_PROC_NUMBER=4
[2025-12-16 16:06:03] Set ATHENA_CORE_NUMBER=4
[2025-12-16 16:06:03] Starting ATLAS job with PandaID=6926682976
[2025-12-16 16:06:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-17 03:18:32]  *** The last 200 lines of the pilot log: ***
[2025-12-17 03:18:32] 2025-12-17 02:10:29,384 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6926682976/HITS.47866687._000490.pool.root.1 since it does not exist
[2025-12-17 03:18:32] 2025-12-17 02:10:29,385 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2686.979078125001
[2025-12-17 03:18:32] 2025-12-17 02:10:29,403 | INFO     | using path: /scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6926682976/memory_monitor_summary.json (trf name=prmon)
[2025-12-17 03:18:32] 2025-12-17 02:10:29,404 | INFO     | extracted standard info from prmon json
[2025-12-17 03:18:32] 2025-12-17 02:10:29,404 | INFO     | extracted standard memory fields from prmon json
[2025-12-17 03:18:32] 2025-12-17 02:10:29,404 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-17 03:18:32] 2025-12-17 02:10:29,417 | INFO     | fitting pss+swap vs Time
[2025-12-17 03:18:32] 2025-12-17 02:10:29,418 | INFO     | sum of square deviations: 86340861318.9863
[2025-12-17 03:18:32] 2025-12-17 02:10:29,428 | INFO     | sum of deviations: 385976571762.4366
[2025-12-17 03:18:32] 2025-12-17 02:10:29,428 | INFO     | mean x: 1765917494.004594
[2025-12-17 03:18:32] 2025-12-17 02:10:29,428 | INFO     | mean y: 2663515.854517611
[2025-12-17 03:18:32] 2025-12-17 02:10:29,429 | INFO     | intersect: -7891661024.562389
[2025-12-17 03:18:32] 2025-12-17 02:10:29,430 | INFO     | chi2: 4.307364007601723
[2025-12-17 03:18:32] 2025-12-17 02:10:29,431 | INFO     | sum of square deviations: 84372676493.98589
[2025-12-17 03:18:32] 2025-12-17 02:10:29,440 | INFO     | sum of deviations: 540551046861.5094
[2025-12-17 03:18:32] 2025-12-17 02:10:29,441 | INFO     | mean x: 1765917341.5046296
[2025-12-17 03:18:32] 2025-12-17 02:10:29,441 | INFO     | mean y: 2675481.8302469137
[2025-12-17 03:18:32] 2025-12-17 02:10:29,441 | INFO     | intersect: -11311040134.25861
[2025-12-17 03:18:32] 2025-12-17 02:10:29,442 | INFO     | chi2: 2.324528144905179
[2025-12-17 03:18:32] 2025-12-17 02:10:29,442 | INFO     | current chi2=2.324528144905179 (change=46.033626579903526 %)
[2025-12-17 03:18:32] 2025-12-17 02:10:29,443 | INFO     | sum of square deviations: 82434631768.98595
[2025-12-17 03:18:32] 2025-12-17 02:10:29,452 | INFO     | sum of deviations: 567104197026.3849
[2025-12-17 03:18:32] 2025-12-17 02:10:29,453 | INFO     | mean x: 1765917189.0046656
[2025-12-17 03:18:32] 2025-12-17 02:10:29,453 | INFO     | mean y: 2677562.205287714
[2025-12-17 03:18:32] 2025-12-17 02:10:29,453 | INFO     | intersect: -12145845794.968931
[2025-12-17 03:18:32] 2025-12-17 02:10:29,454 | INFO     | chi2: 2.1704976474299484
[2025-12-17 03:18:32] 2025-12-17 02:10:29,454 | INFO     | current chi2=2.1704976474299484 (change=6.626312433034172 %)
[2025-12-17 03:18:32] 2025-12-17 02:10:29,454 | INFO     | right removable region: 642
[2025-12-17 03:18:32] 2025-12-17 02:10:29,455 | INFO     | sum of square deviations: 84372674663.98589
[2025-12-17 03:18:32] 2025-12-17 02:10:29,464 | INFO     | sum of deviations: 235986517345.99982
[2025-12-17 03:18:32] 2025-12-17 02:10:29,465 | INFO     | mean x: 1765917646.5046296
[2025-12-17 03:18:32] 2025-12-17 02:10:29,465 | INFO     | mean y: 2675107.6666666665
[2025-12-17 03:18:32] 2025-12-17 02:10:29,465 | INFO     | intersect: -4936515892.003663
[2025-12-17 03:18:32] 2025-12-17 02:10:29,466 | INFO     | chi2: 2.1784834962799158
[2025-12-17 03:18:32] 2025-12-17 02:10:29,466 | INFO     | current chi2=2.1784834962799158 (change=49.4242071848285 %)
[2025-12-17 03:18:32] 2025-12-17 02:10:29,467 | INFO     | sum of square deviations: 82434667513.99399
[2025-12-17 03:18:32] 2025-12-17 02:10:29,476 | INFO     | sum of deviations: 225910106541.15118
[2025-12-17 03:18:32] 2025-12-17 02:10:29,477 | INFO     | mean x: 1765917799.0031104
[2025-12-17 03:18:32] 2025-12-17 02:10:29,477 | INFO     | mean y: 2675900.4245723174
[2025-12-17 03:18:32] 2025-12-17 02:10:29,477 | INFO     | intersect: -4836776846.176058
[2025-12-17 03:18:32] 2025-12-17 02:10:29,478 | INFO     | chi2: 2.1765802026759404
[2025-12-17 03:18:32] 2025-12-17 02:10:29,478 | INFO     | current chi2=2.1765802026759404 (change=0.08736782294772942 %)
[2025-12-17 03:18:32] 2025-12-17 02:10:29,478 | INFO     | left removable region: 20
[2025-12-17 03:18:32] 2025-12-17 02:10:29,479 | INFO     | sum of square deviations: 74618796103.49828
[2025-12-17 03:18:32] 2025-12-17 02:10:29,488 | INFO     | sum of deviations: 373985694112.7011
[2025-12-17 03:18:32] 2025-12-17 02:10:29,488 | INFO     | mean x: 1765917768.5016077
[2025-12-17 03:18:32] 2025-12-17 02:10:29,488 | INFO     | mean y: 2692795.29903537
[2025-12-17 03:18:32] 2025-12-17 02:10:29,488 | INFO     | intersect: -8847999213.762524
[2025-12-17 03:18:32] 2025-12-17 02:10:29,489 | INFO     | chi2: 0.013526430403423434
[2025-12-17 03:18:32] 2025-12-17 02:10:29,489 | INFO     | current memory leak: 5.01 B/s (using 622 data points, chi2=0.01)
[2025-12-17 03:18:32] 2025-12-17 02:10:29,490 | INFO     | could have reported an average CPU frequency of 2588 MHz (25 samples)
[2025-12-17 03:18:32] 2025-12-17 02:10:29,491 | INFO     | ..............................
[2025-12-17 03:18:32] 2025-12-17 02:10:29,491 | INFO     | . Timing measurements:
[2025-12-17 03:18:32] 2025-12-17 02:10:29,491 | INFO     | . get job = 0 s
[2025-12-17 03:18:32] 2025-12-17 02:10:29,491 | INFO     | . initial setup = 1 s
[2025-12-17 03:18:32] 2025-12-17 02:10:29,491 | INFO     | . payload setup = 10 s
[2025-12-17 03:18:32] 2025-12-17 02:10:29,491 | INFO     | . stage-in = 0 s
[2025-12-17 03:18:32] 2025-12-17 02:10:29,491 | INFO     | . payload execution = 39813 s
[2025-12-17 03:18:32] 2025-12-17 02:10:29,491 | INFO     | . stage-out = 1 s
[2025-12-17 03:18:32] 2025-12-17 02:10:29,491 | INFO     | . log creation = 0 s
[2025-12-17 03:18:32] 2025-12-17 02:10:29,492 | INFO     | ..............................
[2025-12-17 03:18:32] 2025-12-17 02:10:29,597 | INFO     | 
[2025-12-17 03:18:32] 2025-12-17 02:10:29,597 | INFO     | job summary report
[2025-12-17 03:18:32] 2025-12-17 02:10:29,597 | INFO     | --------------------------------------------------
[2025-12-17 03:18:32] 2025-12-17 02:10:29,597 | INFO     | PanDA job id: 6926682976
[2025-12-17 03:18:32] 2025-12-17 02:10:29,597 | INFO     | task id: 47866687
[2025-12-17 03:18:32] 2025-12-17 02:10:29,598 | INFO     | errors: (none)
[2025-12-17 03:18:32] 2025-12-17 02:10:29,598 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-17 03:18:32] 2025-12-17 02:10:29,598 | INFO     | pilot state: finished 
[2025-12-17 03:18:32] 2025-12-17 02:10:29,598 | INFO     | transexitcode: 0
[2025-12-17 03:18:32] 2025-12-17 02:10:29,598 | INFO     | exeerrorcode: 0
[2025-12-17 03:18:32] 2025-12-17 02:10:29,598 | INFO     | exeerrordiag: 
[2025-12-17 03:18:32] 2025-12-17 02:10:29,598 | INFO     | exitcode: 0
[2025-12-17 03:18:32] 2025-12-17 02:10:29,598 | INFO     | exitmsg: OK
[2025-12-17 03:18:32] 2025-12-17 02:10:29,598 | INFO     | cpuconsumptiontime: 156607 s
[2025-12-17 03:18:32] 2025-12-17 02:10:29,598 | INFO     | nevents: 1000
[2025-12-17 03:18:32] 2025-12-17 02:10:29,598 | INFO     | neventsw: 0
[2025-12-17 03:18:32] 2025-12-17 02:10:29,598 | INFO     | pid: 1448228
[2025-12-17 03:18:32] 2025-12-17 02:10:29,599 | INFO     | pgrp: 1448228
[2025-12-17 03:18:32] 2025-12-17 02:10:29,599 | INFO     | corecount: 4
[2025-12-17 03:18:32] 2025-12-17 02:10:29,599 | INFO     | event service: False
[2025-12-17 03:18:32] 2025-12-17 02:10:29,599 | INFO     | sizes: {0: 2284399, 1: 2284598, 5: 2284860, 12: 2284916, 39829: 2347014, 39831: 2356030, 39833: 2356214, 39838: 2356552}
[2025-12-17 03:18:32] 2025-12-17 02:10:29,599 | INFO     | --------------------------------------------------
[2025-12-17 03:18:32] 2025-12-17 02:10:29,599 | INFO     | 
[2025-12-17 03:18:32] 2025-12-17 02:10:29,599 | INFO     | executing command: ls -lF /scratch/boinc/var/slot52/slots/0
[2025-12-17 03:18:32] 2025-12-17 02:10:29,620 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-17 03:18:32] 2025-12-17 02:10:29,620 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-17 03:18:32] 2025-12-17 02:10:29,621 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-17 03:18:32] 2025-12-17 02:10:29,621 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-17 03:18:32] 2025-12-17 02:10:29,621 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-17 03:18:32] 2025-12-17 02:10:29,621 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-17 03:18:32] 2025-12-17 02:10:29,621 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-17 03:18:32] 2025-12-17 02:10:29,621 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-17 03:18:32] 2025-12-17 02:10:29,621 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-17 03:18:32] 2025-12-17 02:10:29,621 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-17 03:18:32] 2025-12-17 02:10:29,621 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-17 03:18:32] 2025-12-17 02:10:29,622 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-17 03:18:32] 2025-12-17 02:10:29,622 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-17 03:18:32] 2025-12-17 02:10:29,622 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-17 03:18:32] 2025-12-17 02:10:29,622 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-17 03:18:32] 2025-12-17 02:10:29,622 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-17 03:18:32] 2025-12-17 02:10:29,622 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-17 03:18:32] 2025-12-17 02:10:29,622 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-17 03:18:32] 2025-12-17 02:10:29,622 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-17 03:18:32] 2025-12-17 02:10:29,622 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-17 03:18:32] 2025-12-17 02:10:29,622 | INFO     | job 6926682976 has completed (purged errors)
[2025-12-17 03:18:32] 2025-12-17 02:10:29,623 | INFO     | overall cleanup function is called
[2025-12-17 03:18:32] 2025-12-17 02:10:29,968 | INFO     | number of running child processes to parent process 1448228: 1
[2025-12-17 03:18:32] 2025-12-17 02:10:29,969 | INFO     | maximum number of monitored processes: 9
[2025-12-17 03:18:32] 2025-12-17 02:10:29,969 | INFO     | aborting job monitoring since job object (job id=6926682976) has expired
[2025-12-17 03:18:32] 2025-12-17 02:10:30,642 | INFO     | --- collectZombieJob: --- 10, [1448228]
[2025-12-17 03:18:32] 2025-12-17 02:10:30,642 | INFO     | zombie collector waiting for pid 1448228
[2025-12-17 03:18:32] 2025-12-17 02:10:30,642 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-17 03:18:32] 2025-12-17 02:10:30,642 | INFO     | collected zombie processes
[2025-12-17 03:18:32] 2025-12-17 02:10:30,642 | INFO     | will attempt to kill all subprocesses of pid=1448228
[2025-12-17 03:18:32] 2025-12-17 02:10:30,999 | INFO     | process IDs to be killed: [1448228] (in reverse order)
[2025-12-17 03:18:32] 2025-12-17 02:10:31,102 | WARNING  | found no corresponding commands to process id(s)
[2025-12-17 03:18:32] 2025-12-17 02:10:31,102 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-17 03:18:32] 2025-12-17 02:10:31,114 | INFO     | did not find any defunct processes belonging to 1448228
[2025-12-17 03:18:32] 2025-12-17 02:10:31,126 | INFO     | did not find any defunct processes belonging to 1448228
[2025-12-17 03:18:32] 2025-12-17 02:10:31,126 | INFO     | ready for new job
[2025-12-17 03:18:32] 2025-12-17 02:10:31,126 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-17 03:18:32] 2025-12-17 02:10:31,130 | INFO     | ***************************************
[2025-12-17 03:18:32] 2025-12-17 02:10:31,130 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-17 03:18:32] 2025-12-17 02:10:31,131 | INFO     | ***************************************
[2025-12-17 03:18:32] 2025-12-17 02:10:31,131 | INFO     | 
[2025-12-17 03:18:32] 2025-12-17 02:10:31,134 | INFO     | architecture information:
[2025-12-17 03:18:32] 2025-12-17 02:10:31,135 | INFO     | executing command: cat /etc/os-release
[2025-12-17 03:18:32] 2025-12-17 02:10:31,152 | INFO     | cat /etc/os-release:
[2025-12-17 03:18:32] NAME="CentOS Linux"
[2025-12-17 03:18:32] VERSION="7 (Core)"
[2025-12-17 03:18:32] ID="centos"
[2025-12-17 03:18:32] ID_LIKE="rhel fedora"
[2025-12-17 03:18:32] VERSION_ID="7"
[2025-12-17 03:18:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-17 03:18:32] ANSI_COLOR="0;31"
[2025-12-17 03:18:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-17 03:18:32] HOME_URL="https://www.centos.org/"
[2025-12-17 03:18:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-17 03:18:32] 
[2025-12-17 03:18:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-17 03:18:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-17 03:18:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-17 03:18:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-17 03:18:32] 
[2025-12-17 03:18:32] 2025-12-17 02:10:31,153 | INFO     | ***************************************
[2025-12-17 03:18:32] 2025-12-17 02:10:31,656 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/0
[2025-12-17 03:18:32] 2025-12-17 02:10:31,673 | INFO     | sufficient remaining disk space (624821272576 B)
[2025-12-17 03:18:32] 2025-12-17 02:10:31,674 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-17 03:18:32] 2025-12-17 02:10:31,674 | INFO     | current server update state: UPDATING_FINAL
[2025-12-17 03:18:32] 2025-12-17 02:10:31,674 | INFO     | update_server=False
[2025-12-17 03:18:32] 2025-12-17 02:10:31,674 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-17 03:18:32] 2025-12-17 02:10:31,675 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-17 03:18:32] 2025-12-17 02:10:31,675 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-17 03:18:32] 2025-12-17 02:10:31,675 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-17 03:18:32] 2025-12-17 02:10:31,675 | INFO     | aborting loop
[2025-12-17 03:18:32] 2025-12-17 02:10:31,796 | INFO     | all data control threads have been joined
[2025-12-17 03:18:32] 2025-12-17 02:10:32,310 | INFO     | all payload control threads have been joined
[2025-12-17 03:18:32] 2025-12-17 02:10:32,680 | INFO     | [job] retrieve thread has finished
[2025-12-17 03:18:32] 2025-12-17 02:10:32,681 | INFO     | [job] job monitor thread has finished
[2025-12-17 03:18:32] 2025-12-17 02:10:32,727 | INFO     | all job control threads have been joined
[2025-12-17 03:18:32] 2025-12-17 02:10:32,757 | INFO     | [payload] validate_post thread has finished
[2025-12-17 03:18:32] 2025-12-17 02:10:32,801 | INFO     | [data] control thread has finished
[2025-12-17 03:18:32] 2025-12-17 02:10:32,882 | INFO     | [payload] validate_pre thread has finished
[2025-12-17 03:18:32] 2025-12-17 02:10:33,316 | INFO     | [payload] control thread has finished
[2025-12-17 03:18:32] 2025-12-17 02:10:33,495 | INFO     | [payload] execute_payloads thread has finished
[2025-12-17 03:18:32] 2025-12-17 02:10:33,550 | INFO     | [job] create_data_payload thread has finished
[2025-12-17 03:18:32] 2025-12-17 02:10:33,677 | INFO     | [payload] failed_post thread has finished
[2025-12-17 03:18:32] 2025-12-17 02:10:33,678 | INFO     | [data] copytool_out thread has finished
[2025-12-17 03:18:32] 2025-12-17 02:10:33,729 | INFO     | [job] control thread has finished
[2025-12-17 03:18:32] 2025-12-17 02:10:33,984 | INFO     | [job] validate thread has finished
[2025-12-17 03:18:32] 2025-12-17 02:10:33,998 | INFO     | [data] copytool_in thread has finished
[2025-12-17 03:18:32] 2025-12-17 02:10:34,605 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-17 03:18:32] 2025-12-17 02:10:35,611 | INFO     | [job] queue monitor thread has finished
[2025-12-17 03:18:32] 2025-12-17 02:10:35,681 | INFO     | [data] queue_monitor thread has finished
[2025-12-17 03:18:32] 2025-12-17 02:10:42,334 | INFO     | job.realtimelogging is not enabled
[2025-12-17 03:18:32] 2025-12-17 02:10:43,340 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-17 03:18:32] 2025-12-17 02:11:01,635 | INFO     | PID=1428185 has CPU usage=9.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-17 03:18:32] 2025-12-17 02:11:01,635 | INFO     | .. there are 4 such processes running
[2025-12-17 03:18:32] 2025-12-17 02:11:01,636 | INFO     | found 0 job(s) in 20 queues
[2025-12-17 03:18:32] 2025-12-17 02:11:01,636 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-17 03:18:32] 2025-12-17 02:11:01,636 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-17 03:18:32] 2025-12-17 02:11:21,710 | INFO     | [monitor] cgroup control has ended
[2025-12-17 03:18:32] 2025-12-17 02:11:23,307 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22773398185792)>', '<ExcThread(monitor, started 22773158082304)>']
[2025-12-17 03:18:32] 2025-12-17 02:11:23,745 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-17 03:18:32] 2025-12-17 02:11:23,746 | INFO     | [monitor] control thread has ended
[2025-12-17 03:18:32] 2025-12-17 02:11:28,326 | INFO     | all workflow threads have been joined
[2025-12-17 03:18:32] 2025-12-17 02:11:28,326 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-17 03:18:32] 2025-12-17 02:11:28,326 | INFO     | traces error code: 0
[2025-12-17 03:18:32] 2025-12-17 02:11:28,326 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-17 03:18:32] 2025-12-17 02:11:28,505 [wrapper] ==== pilot stdout END ====
[2025-12-17 03:18:32] 2025-12-17 02:11:28,508 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-17 03:18:32] 2025-12-17 02:11:28,510 [wrapper] pilotpid: 1428185
[2025-12-17 03:18:32] 2025-12-17 02:11:28,513 [wrapper] Pilot exit status: 0
[2025-12-17 03:18:32] 2025-12-17 02:11:28,523 [wrapper] pandaids: 6926682976
[2025-12-17 03:18:32] 2025-12-17 02:11:28,602 [wrapper] cleanup supervisor_pilot 2063399 1428187
[2025-12-17 03:18:32] 2025-12-17 02:11:28,606 [wrapper] Test setup, not cleaning
[2025-12-17 03:18:32] 2025-12-17 02:11:28,609 [wrapper] apfmon messages muted
[2025-12-17 03:18:32] 2025-12-17 02:11:28,612 [wrapper] ==== wrapper stdout END ====
[2025-12-17 03:18:32] 2025-12-17 02:11:28,615 [wrapper] ==== wrapper stderr END ====
[2025-12-17 03:18:32]  *** Error codes and diagnostics ***
[2025-12-17 03:18:32]     "exeErrorCode": 0,
[2025-12-17 03:18:32]     "exeErrorDiag": "",
[2025-12-17 03:18:32]     "pilotErrorCode": 0,
[2025-12-17 03:18:32]     "pilotErrorDiag": "",
[2025-12-17 03:18:32]  *** Listing of results directory ***
[2025-12-17 03:18:32] total 937616
[2025-12-17 03:18:32] -rw-r--r-- 1 boinc boinc    579449 Dec 11 11:23 pilot3.tar.gz
[2025-12-17 03:18:32] -rwx------ 1 boinc boinc     36292 Dec 11 11:40 runpilot2-wrapper.sh
[2025-12-17 03:18:32] -rw-r--r-- 1 boinc boinc      5112 Dec 11 11:40 queuedata.json
[2025-12-17 03:18:32] -rw-r--r-- 1 boinc boinc       100 Dec 16 16:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-17 03:18:32] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 16:05 run_atlas
[2025-12-17 03:18:32] -rw-r--r-- 1 boinc boinc       105 Dec 16 16:05 job.xml
[2025-12-17 03:18:32] -rw-r--r-- 2 boinc boinc 328748758 Dec 16 16:06 EVNT.47866683._000049.pool.root.1
[2025-12-17 03:18:32] -rw-r--r-- 1 boinc boinc      6638 Dec 16 16:06 init_data.xml
[2025-12-17 03:18:32] -rw-r--r-- 2 boinc boinc     15847 Dec 16 16:06 start_atlas.sh
[2025-12-17 03:18:32] drwxrwx--x 2 boinc boinc      4096 Dec 16 16:06 shared
[2025-12-17 03:18:32] -rw-r--r-- 2 boinc boinc    592587 Dec 16 16:06 input.tar.gz
[2025-12-17 03:18:32] -rw-r--r-- 1 boinc boinc         0 Dec 16 16:06 boinc_lockfile
[2025-12-17 03:18:32] -rw-r--r-- 1 boinc boinc      2847 Dec 16 16:06 pandaJob.out
[2025-12-17 03:18:32] -rw------- 1 boinc boinc    987355 Dec 16 16:06 agis_schedconf.cvmfs.json
[2025-12-17 03:18:32] drwx------ 5 boinc boinc      4096 Dec 16 16:06 pilot3
[2025-12-17 03:18:32] -rw-r--r-- 1 boinc boinc       531 Dec 17 03:01 boinc_task_state.xml
[2025-12-17 03:18:32] -rw------- 1 boinc boinc 613159309 Dec 17 03:09 HITS.47866687._000490.pool.root.1
[2025-12-17 03:18:32] -rw------- 1 boinc boinc      1043 Dec 17 03:10 memory_monitor_summary.json
[2025-12-17 03:18:32] -rw------- 1 boinc boinc   1516240 Dec 17 03:10 agis_ddmendpoints.agis.ALL.json
[2025-12-17 03:18:32] -rw------- 1 boinc boinc   1533787 Dec 17 03:10 log.47866687._000490.job.log.tgz.1
[2025-12-17 03:18:32] -rw------- 1 boinc boinc     28008 Dec 17 03:10 heartbeat.json
[2025-12-17 03:18:32] -rw------- 1 boinc boinc        95 Dec 17 03:11 pilot_heartbeat.json
[2025-12-17 03:18:32] -rw------- 1 boinc boinc      4905 Dec 17 03:11 pilotlog.txt
[2025-12-17 03:18:32] -rw------- 1 boinc boinc   5591292 Dec 17 03:11 log.47866687._000490.job.log.1
[2025-12-17 03:18:32] -rw------- 1 boinc boinc       353 Dec 17 03:11 output.list
[2025-12-17 03:18:32] -rw-r--r-- 1 boinc boinc       620 Dec 17 03:11 runtime_log
[2025-12-17 03:18:32] -rw------- 1 boinc boinc   7168000 Dec 17 03:11 result.tar.gz
[2025-12-17 03:18:32] -rw-r--r-- 1 boinc boinc      9206 Dec 17 03:11 runtime_log.err
[2025-12-17 03:18:32] -rw------- 1 boinc boinc       669 Dec 17 03:11 5tNLDmiGtn8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXmQKDmZbdc6m.diag
[2025-12-17 03:18:32] -rw-r--r-- 1 boinc boinc        28 Dec 17 03:18 wrapper_checkpoint.txt
[2025-12-17 03:18:32] -rw-r--r-- 1 boinc boinc      8192 Dec 17 03:18 boinc_mmap_file
[2025-12-17 03:18:32] -rw-r--r-- 1 boinc boinc     21091 Dec 17 03:18 stderr.txt
[2025-12-17 03:18:32] HITS file was successfully produced:
[2025-12-17 03:18:32] -rw------- 1 boinc boinc 613159309 Dec 17 03:09 shared/HITS.pool.root.1
[2025-12-17 03:18:32]  *** Contents of shared directory: ***
[2025-12-17 03:18:32] total 927440
[2025-12-17 03:18:32] -rw-r--r-- 2 boinc boinc 328748758 Dec 16 16:06 ATLAS.root_0
[2025-12-17 03:18:32] -rw-r--r-- 2 boinc boinc     15847 Dec 16 16:06 start_atlas.sh
[2025-12-17 03:18:32] -rw-r--r-- 2 boinc boinc    592587 Dec 16 16:06 input.tar.gz
[2025-12-17 03:18:32] -rw------- 1 boinc boinc 613159309 Dec 17 03:09 HITS.pool.root.1
[2025-12-17 03:18:32] -rw------- 1 boinc boinc   7168000 Dec 17 03:11 result.tar.gz
03:18:34 (1422731): run_atlas exited; CPU time 158286.371689
03:18:34 (1422731): called boinc_finish(0)

</stderr_txt>
]]>

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