Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-12-11 19:37:33 (11660): vboxwrapper version 26210
2025-12-11 19:37:33 (11660): BOINC client version: 8.0.2
2025-12-11 19:37:33 (11660): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-12-11 19:37:33 (11660): Successfully copied 'init_data.xml' to the shared directory.
2025-12-11 19:37:34 (11660): Create VM. (boinc_70db81c0b1789501, slot#4)
2025-12-11 19:37:34 (11660): Setting Memory Size for VM. (4100MB)
2025-12-11 19:37:35 (11660): Setting CPU Count for VM. (1)
2025-12-11 19:37:35 (11660): Setting Chipset Options for VM.
2025-12-11 19:37:35 (11660): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-12-11 19:37:35 (11660): Setting Boot Options for VM.
2025-12-11 19:37:36 (11660): Setting Network Configuration for NAT. (Driver: virtio)
2025-12-11 19:37:36 (11660): Enabling VM Network Access.
2025-12-11 19:37:36 (11660): Disabling USB Support for VM.
2025-12-11 19:37:37 (11660): Disabling COM Port Support for VM.
2025-12-11 19:37:37 (11660): Disabling LPT Port Support for VM.
2025-12-11 19:37:37 (11660): Disabling Audio Support for VM.
2025-12-11 19:37:37 (11660): Disabling Clipboard Support for VM.
2025-12-11 19:37:38 (11660): Disabling Drag and Drop Support for VM.
2025-12-11 19:37:38 (11660): Adding storage controller(s) to VM.
2025-12-11 19:37:38 (11660): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-12-11 19:37:39 (11660): Adding VirtualBox Guest Additions to VM.
2025-12-11 19:37:39 (11660): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-12-11 19:37:39 (11660): forwarding host port 52833 to guest port 80
2025-12-11 19:37:40 (11660): Enabling remote desktop for VM.
2025-12-11 19:37:40 (11660): Enabling shared directory for VM.
2025-12-11 19:37:41 (11660): Starting VM using VBoxManage interface. (boinc_70db81c0b1789501, slot#4)
2025-12-11 19:37:52 (11660): Successfully started VM. (PID = '10664')
2025-12-11 19:37:52 (11660): Reporting VM Process ID to BOINC.
2025-12-11 19:37:52 (11660): Guest Log: BIOS: VirtualBox 7.1.4
2025-12-11 19:37:52 (11660): Guest Log: CPUID EDX: 0x178bfbff
2025-12-11 19:37:52 (11660): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-12-11 19:37:52 (11660): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-12-11 19:37:52 (11660): VM state change detected. (old = 'poweredoff', new = 'running')
2025-12-11 19:37:52 (11660): Detected: Web Application Enabled (http://localhost:52833)
2025-12-11 19:37:52 (11660): Detected: Remote Desktop Enabled (localhost:52834)
2025-12-11 19:37:52 (11660): Preference change detected
2025-12-11 19:37:52 (11660): Setting CPU throttle for VM. (100%)
2025-12-11 19:37:53 (11660): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-12-11 19:37:54 (11660): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-12-11 19:37:54 (11660): Guest Log: BIOS: Booting from Hard Disk...
2025-12-11 19:38:19 (11660): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-12-11 19:38:19 (11660): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-12-11 19:38:19 (11660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-12-11 19:38:26 (11660): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-12-11 19:38:26 (11660): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-12-11 19:38:44 (11660): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-12-11 19:38:44 (11660): Guest Log: 00:00:00.000263 main     Log opened 2025-12-11T19:38:42.764335000Z
2025-12-11 19:38:44 (11660): Guest Log: 00:00:00.000441 main     OS Product: Linux
2025-12-11 19:38:44 (11660): Guest Log: 00:00:00.000499 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-12-11 19:38:44 (11660): Guest Log: 00:00:00.000545 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-12-11 19:38:44 (11660): Guest Log: 00:00:00.000592 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-12-11 19:38:44 (11660): Guest Log: 00:00:00.000593 main     Process ID: 1262
2025-12-11 19:38:44 (11660): Guest Log: 00:00:00.000595 main     Package type: LINUX_64BITS_GENERIC
2025-12-11 19:38:44 (11660): Guest Log: 00:00:00.002183 main     5.2.32 r132073 started. Verbose level = 0
2025-12-11 19:38:45 (11660): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-12-11 19:38:45 (11660): Guest Log: [INFO] Mounting shared directory
2025-12-11 19:38:45 (11660): Guest Log: [INFO] Checking for init_data.xml
2025-12-11 19:38:51 (11660): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-12-11 19:38:51 (11660): Guest Log: [INFO] Detected branch: prod
2025-12-11 19:38:52 (11660): Guest Log: This is the prod version of the ATLAS job wrapper
2025-12-11 19:38:52 (11660): Guest Log: Copying input files
2025-12-11 19:38:54 (11660): Guest Log: 00:00:10.037825 timesync vgsvcTimeSyncWorker: Radical guest time change: 28 812 023 395 000ns (GuestNow=1 765 510 734 823 615 000 ns GuestLast=1 765 481 922 800 220 000 ns fSetTimeLastLoop=true )
2025-12-11 19:38:55 (11660): Guest Log: Copied input files into RunAtlas.
2025-12-11 19:38:55 (11660): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-12-11 19:38:55 (11660): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-12-11 19:38:55 (11660): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-12-11 19:38:55 (11660): Guest Log: Further information can be found at the LHC@home message board.
2025-12-11 19:39:42 (11660): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-12-11 19:39:56 (11660): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-12-11 19:39:56 (11660): Guest Log: 2.6.3.0 1538 0 32108 153909 3 1 3117737 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-12-11 19:40:03 (11660): Guest Log: copied the webapp to /var/www
2025-12-11 19:40:03 (11660): Guest Log: core_number=1
2025-12-11 19:40:03 (11660): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-12-11 19:40:03 (11660): Guest Log:  *** Starting ATLAS job. (PandaID=6926683015 taskID=47866709) ***
2025-12-11 19:54:35 (11660): Guest Log:  *** Job finished ***
2025-12-11 19:54:35 (11660): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-12-11 19:54:35 (11660): Guest Log: 2025-12-12 03:53:53,564 | INFO     | [job] queue monitor thread has finished
2025-12-11 19:54:35 (11660): Guest Log: 2025-12-12 03:53:56,058 | INFO     | [data] queue_monitor thread has finished
2025-12-11 19:54:35 (11660): Guest Log: 2025-12-12 03:54:27,724 | INFO     | [monitor] cgroup control has ended
2025-12-11 19:54:35 (11660): Guest Log: 2025-12-12 03:54:28,726 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140344073844544)>', '<ExcThread(monitor, started 140343416710912)>']
2025-12-11 19:54:35 (11660): Guest Log: 2025-12-12 03:54:28,981 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-12-11 19:54:35 (11660): Guest Log: 2025-12-12 03:54:28,981 | INFO     | [monitor] control thread has ended
2025-12-11 19:54:35 (11660): Guest Log: 2025-12-12 03:54:33,733 | INFO     | all workflow threads have been joined
2025-12-11 19:54:35 (11660): Guest Log: 2025-12-12 03:54:33,733 | INFO     | end of generic workflow (traces error code: 0)
2025-12-11 19:54:35 (11660): Guest Log: 2025-12-12 03:54:33,734 | INFO     | traces error code: 0
2025-12-11 19:54:35 (11660): Guest Log: 2025-12-12 03:54:33,734 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-12-11 19:54:35 (11660): Guest Log: 2025-12-12 03:54:33,882 [wrapper] ==== pilot stdout END ====
2025-12-11 19:54:35 (11660): Guest Log: 2025-12-12 03:54:33,894 [wrapper] ==== wrapper stdout RESUME ====
2025-12-11 19:54:35 (11660): Guest Log: 2025-12-12 03:54:33,903 [wrapper] pilotpid: 5899
2025-12-11 19:54:35 (11660): Guest Log: 2025-12-12 03:54:33,910 [wrapper] Pilot exit status: 0
2025-12-11 19:54:35 (11660): Guest Log: 2025-12-12 03:54:33,948 [wrapper] pandaids: 6926683015
2025-12-11 19:54:35 (11660): Guest Log: 2025-12-12 03:54:34,013 [wrapper] cleanup supervisor_pilot  5905 5900
2025-12-11 19:54:35 (11660): Guest Log: 2025-12-12 03:54:34,022 [wrapper] Test setup, not cleaning
2025-12-11 19:54:35 (11660): Guest Log: 2025-12-12 03:54:34,029 [wrapper] apfmon messages muted
2025-12-11 19:54:35 (11660): Guest Log: 2025-12-12 03:54:34,037 [wrapper] ==== wrapper stdout END ====
2025-12-11 19:54:35 (11660): Guest Log: 2025-12-12 03:54:34,044 [wrapper] ==== wrapper stderr END ====
2025-12-11 19:54:35 (11660): Guest Log:  *** Error codes and diagnostics ***
2025-12-11 19:54:35 (11660): Guest Log:     "exeErrorCode": 0,
2025-12-11 19:54:35 (11660): Guest Log:     "exeErrorDiag": "",
2025-12-11 19:54:35 (11660): Guest Log:     "pilotErrorCode": 1305,
2025-12-11 19:54:35 (11660): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139)",
2025-12-11 19:54:35 (11660): Guest Log:  *** Listing of results directory ***
2025-12-11 19:54:35 (11660): Guest Log: total 4136
2025-12-11 19:54:35 (11660): Guest Log: -rw-r--r--. 1 atlas atlas  579449 Dec 11 10:23 pilot3.tar.gz
2025-12-11 19:54:35 (11660): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Dec 11 10:38 queuedata.json
2025-12-11 19:54:35 (11660): Guest Log: -rwx------. 1 atlas atlas   36292 Dec 11 10:40 runpilot2-wrapper.sh
2025-12-11 19:54:35 (11660): Guest Log: -rwxr-xr-x. 1 atlas atlas    8222 Dec 12 03:38 init_data.xml
2025-12-11 19:54:35 (11660): Guest Log: -rwxr-xr-x. 1 atlas atlas  592582 Dec 12 03:38 input.tar.gz
2025-12-11 19:54:35 (11660): Guest Log: -rwxr-xr-x. 1 atlas atlas   15847 Dec 12 03:38 start_atlas.sh
2025-12-11 19:54:35 (11660): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Dec 12 03:38 EVNT.47866705._000003.pool.root.1 -> /data/./ATLAS.root_0
2025-12-11 19:54:35 (11660): Guest Log: -rw-r--r--. 1 atlas atlas    2845 Dec 12 03:40 pandaJob.out
2025-12-11 19:54:35 (11660): Guest Log: -rw-------. 1 atlas atlas  990114 Dec 12 03:41 agis_schedconf.cvmfs.json
2025-12-11 19:54:35 (11660): Guest Log: -rw-------. 1 atlas atlas 1516240 Dec 12 03:41 agis_ddmendpoints.agis.ALL.json
2025-12-11 19:54:35 (11660): Guest Log: drwx------. 5 atlas atlas    4096 Dec 12 03:41 pilot3
2025-12-11 19:54:35 (11660): Guest Log: -rw-------. 1 atlas atlas    1008 Dec 12 03:49 memory_monitor_summary.json
2025-12-11 19:54:35 (11660): Guest Log: -rw-------. 1 atlas atlas   56146 Dec 12 03:49 log.47866709._000045.job.log.tgz.1
2025-12-11 19:54:35 (11660): Guest Log: -rw-------. 1 atlas atlas      95 Dec 12 03:53 pilot_heartbeat.json
2025-12-11 19:54:35 (11660): Guest Log: -rw-------. 1 atlas atlas    7565 Dec 12 03:53 heartbeat.json
2025-12-11 19:54:35 (11660): Guest Log: -rw-------. 1 atlas atlas    4612 Dec 12 03:54 pilotlog.txt
2025-12-11 19:54:35 (11660): Guest Log: -rw-------. 1 atlas atlas  142740 Dec 12 03:54 log.47866709._000045.job.log.1
2025-12-11 19:54:35 (11660): Guest Log: -rw-------. 1 atlas atlas     186 Dec 12 03:54 output.list
2025-12-11 19:54:35 (11660): Guest Log: -rw-r--r--. 1 atlas atlas     620 Dec 12 03:54 runtime_log
2025-12-11 19:54:35 (11660): Guest Log: -rw-------. 1 atlas atlas  215040 Dec 12 03:54 result.tar.gz
2025-12-11 19:54:35 (11660): Guest Log: -rw-r--r--. 1 atlas atlas    8459 Dec 12 03:54 runtime_log.err
2025-12-11 19:54:35 (11660): Guest Log: -rw-------. 1 atlas atlas     643 Dec 12 03:54 hfeLDmmGtn8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwBNKDmBfGu3n.diag
2025-12-11 19:54:35 (11660): Guest Log: Looking for outputfile HITS.47866709._000045.pool.root.1
2025-12-11 19:54:35 (11660): Guest Log: No HITS file was produced
2025-12-11 19:54:35 (11660): Guest Log: Successfully finished the ATLAS job!
2025-12-11 19:54:35 (11660): Guest Log: Copying the results back to the shared directory!
2025-12-11 19:54:35 (11660): Guest Log:  *** Contents of shared directory: ***
2025-12-11 19:54:35 (11660): Guest Log: total 319864
2025-12-11 19:54:35 (11660): Guest Log: -rwxrwxrwx. 1 root root 326700799 Dec 12 03:37 ATLAS.root_0
2025-12-11 19:54:35 (11660): Guest Log: -rwxrwxrwx. 1 root root      8222 Dec 12 03:37 init_data.xml
2025-12-11 19:54:35 (11660): Guest Log: -rwxrwxrwx. 1 root root    592582 Dec 11 10:43 input.tar.gz
2025-12-11 19:54:35 (11660): Guest Log: -rwxrwxrwx. 1 root root    215040 Dec 12 03:54 result.tar.gz
2025-12-11 19:54:35 (11660): Guest Log: -rwxrwxrwx. 1 root root     15847 Dec 11 10:43 start_atlas.sh
2025-12-11 19:54:35 (11660): Guest Log:  *** Success! Shutting down the machine. ***
2025-12-11 19:54:35 (11660): VM Completion File Detected.
2025-12-11 19:54:35 (11660): Powering off VM.
2025-12-11 19:55:01 (11660): Guest Log: 00:16:09.264910 control  Guest control service stopped
2025-12-11 19:55:01 (11660): Guest Log: 00:16:09.347039 control  Guest control worker returned with rc=VINF_SUCCESS
2025-12-11 19:55:01 (11660): Guest Log: 00:16:09.347386 main     Session 0 is about to close ...
2025-12-11 19:55:01 (11660): Guest Log: 00:16:09.347455 main     Stopping all guest processes ...
2025-12-11 19:55:01 (11660): Guest Log: 00:16:09.347518 main     Closing all guest files ...
2025-12-11 19:55:01 (11660): Guest Log: 00:16:09.432785 main     Ended.
2025-12-11 19:55:01 (11660): Successfully stopped VM.
2025-12-11 19:55:01 (11660): Deregistering VM. (boinc_70db81c0b1789501, slot#4)
2025-12-11 19:55:03 (11660): Removing network bandwidth throttle group from VM.
2025-12-11 19:55:04 (11660): Removing VM from VirtualBox.
2025-12-11 19:55:09 (11660): called boinc_finish(0)

</stderr_txt>
]]>

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