Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:13:17 (102923): wrapper (7.7.26015): starting
17:13:17 (102923): wrapper: running run_atlas (--nthreads 4)
[2025-12-15 17:13:17] Arguments: --nthreads 4
[2025-12-15 17:13:17] Threads: 4
[2025-12-15 17:13:17] Checking for CVMFS
[2025-12-15 17:13:17] No cvmfs_config command found, will try listing directly
[2025-12-15 17:13:17] CVMFS is ok
[2025-12-15 17:13:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 17:13:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 17:13:17] Further information can be found at the LHC@home message board.
[2025-12-15 17:13:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 17:13:17] Checking for apptainer binary...
[2025-12-15 17:13:17] which: no apptainer in ((null))
[2025-12-15 17:13:17] apptainer is not installed, using version from CVMFS
[2025-12-15 17:13:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 17:13:18] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2025-12-15 17:13:18] apptainer works
[2025-12-15 17:13:18] Set ATHENA_PROC_NUMBER=4
[2025-12-15 17:13:18] Set ATHENA_CORE_NUMBER=4
[2025-12-15 17:13:18] Starting ATLAS job with PandaID=6926683009
[2025-12-15 17:13:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 03:50:39]  *** The last 200 lines of the pilot log: ***
[2025-12-16 03:50:39] 2025-12-16 02:41:49,045 | INFO     | pfn file=/scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6926683009/HITS.47866709._000039.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-16 03:50:39] 2025-12-16 02:41:49,045 | INFO     | total size of present files: 0 B (workdir size: 6840068 B)
[2025-12-16 03:50:39] 2025-12-16 02:41:49,045 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6926683009/HITS.47866709._000039.pool.root.1 since it does not exist
[2025-12-16 03:50:39] 2025-12-16 02:41:49,063 | INFO     | using path: /scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6926683009/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 03:50:39] 2025-12-16 02:41:49,064 | INFO     | extracted standard info from prmon json
[2025-12-16 03:50:39] 2025-12-16 02:41:49,064 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 03:50:39] 2025-12-16 02:41:49,065 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 03:50:39] 2025-12-16 02:41:49,078 | INFO     | fitting pss+swap vs Time
[2025-12-16 03:50:39] 2025-12-16 02:41:49,079 | INFO     | sum of square deviations: 73188477374.5
[2025-12-16 03:50:39] 2025-12-16 02:41:49,088 | INFO     | sum of deviations: 244968334435.00003
[2025-12-16 03:50:39] 2025-12-16 02:41:49,088 | INFO     | mean x: 1765834063.5
[2025-12-16 03:50:39] 2025-12-16 02:41:49,088 | INFO     | mean y: 2669583.501618123
[2025-12-16 03:50:39] 2025-12-16 02:41:49,088 | INFO     | intersect: -5907733869.910003
[2025-12-16 03:50:39] 2025-12-16 02:41:49,089 | INFO     | chi2: 4.647416517590372
[2025-12-16 03:50:39] 2025-12-16 02:41:49,090 | INFO     | sum of square deviations: 71426388522.0
[2025-12-16 03:50:39] 2025-12-16 02:41:49,100 | INFO     | sum of deviations: 389784126004.99994
[2025-12-16 03:50:39] 2025-12-16 02:41:49,100 | INFO     | mean x: 1765833911.0
[2025-12-16 03:50:39] 2025-12-16 02:41:49,101 | INFO     | mean y: 2682090.3784665577
[2025-12-16 03:50:39] 2025-12-16 02:41:49,101 | INFO     | intersect: -9633728792.37427
[2025-12-16 03:50:39] 2025-12-16 02:41:49,102 | INFO     | chi2: 2.5378035277866373
[2025-12-16 03:50:39] 2025-12-16 02:41:49,102 | INFO     | current chi2=2.5378035277866373 (change=45.3932412087209 %)
[2025-12-16 03:50:39] 2025-12-16 02:41:49,103 | INFO     | sum of square deviations: 69692811832.0
[2025-12-16 03:50:39] 2025-12-16 02:41:49,111 | INFO     | sum of deviations: 387538235812.99994
[2025-12-16 03:50:39] 2025-12-16 02:41:49,112 | INFO     | mean x: 1765833758.5
[2025-12-16 03:50:39] 2025-12-16 02:41:49,112 | INFO     | mean y: 2681890.601973684
[2025-12-16 03:50:39] 2025-12-16 02:41:49,112 | INFO     | intersect: -9816524445.307611
[2025-12-16 03:50:39] 2025-12-16 02:41:49,113 | INFO     | chi2: 2.5316572644656676
[2025-12-16 03:50:39] 2025-12-16 02:41:49,113 | INFO     | current chi2=2.5316572644656676 (change=0.24218830392793195 %)
[2025-12-16 03:50:39] 2025-12-16 02:41:49,113 | INFO     | right removable region: 607
[2025-12-16 03:50:39] 2025-12-16 02:41:49,114 | INFO     | sum of square deviations: 71426388522.0
[2025-12-16 03:50:39] 2025-12-16 02:41:49,123 | INFO     | sum of deviations: 84258427212.0
[2025-12-16 03:50:39] 2025-12-16 02:41:49,123 | INFO     | mean x: 1765834216.0
[2025-12-16 03:50:39] 2025-12-16 02:41:49,124 | INFO     | mean y: 2683464.7226753673
[2025-12-16 03:50:39] 2025-12-16 02:41:49,124 | INFO     | intersect: -2080389988.0456595
[2025-12-16 03:50:39] 2025-12-16 02:41:49,125 | INFO     | chi2: 2.221944916938804
[2025-12-16 03:50:39] 2025-12-16 02:41:49,125 | INFO     | current chi2=2.221944916938804 (change=52.1896755212538 %)
[2025-12-16 03:50:39] 2025-12-16 02:41:49,126 | INFO     | sum of square deviations: 69692811832.0
[2025-12-16 03:50:39] 2025-12-16 02:41:49,133 | INFO     | sum of deviations: 75213190259.00002
[2025-12-16 03:50:39] 2025-12-16 02:41:49,134 | INFO     | mean x: 1765834368.5
[2025-12-16 03:50:39] 2025-12-16 02:41:49,134 | INFO     | mean y: 2684258.4013157897
[2025-12-16 03:50:39] 2025-12-16 02:41:49,134 | INFO     | intersect: -1903022124.116731
[2025-12-16 03:50:39] 2025-12-16 02:41:49,135 | INFO     | chi2: 2.217699930403362
[2025-12-16 03:50:39] 2025-12-16 02:41:49,135 | INFO     | current chi2=2.217699930403362 (change=0.19104823450306327 %)
[2025-12-16 03:50:39] 2025-12-16 02:41:49,135 | INFO     | left removable region: 20
[2025-12-16 03:50:39] 2025-12-16 02:41:49,136 | INFO     | sum of square deviations: 62717894078.0
[2025-12-16 03:50:39] 2025-12-16 02:41:49,143 | INFO     | sum of deviations: 214626919794.99997
[2025-12-16 03:50:39] 2025-12-16 02:41:49,144 | INFO     | mean x: 1765834338.0
[2025-12-16 03:50:39] 2025-12-16 02:41:49,144 | INFO     | mean y: 2697179.7751277685
[2025-12-16 03:50:39] 2025-12-16 02:41:49,144 | INFO     | intersect: -6040164915.7193365
[2025-12-16 03:50:39] 2025-12-16 02:41:49,145 | INFO     | chi2: 0.07102069220717308
[2025-12-16 03:50:39] 2025-12-16 02:41:49,145 | INFO     | current memory leak: 3.42 B/s (using 587 data points, chi2=0.07)
[2025-12-16 03:50:39] 2025-12-16 02:41:49,146 | INFO     | could have reported an average CPU frequency of 2576 MHz (24 samples)
[2025-12-16 03:50:39] 2025-12-16 02:41:49,147 | INFO     | ..............................
[2025-12-16 03:50:39] 2025-12-16 02:41:49,147 | INFO     | . Timing measurements:
[2025-12-16 03:50:39] 2025-12-16 02:41:49,147 | INFO     | . get job = 0 s
[2025-12-16 03:50:39] 2025-12-16 02:41:49,147 | INFO     | . initial setup = 1 s
[2025-12-16 03:50:39] 2025-12-16 02:41:49,147 | INFO     | . payload setup = 11 s
[2025-12-16 03:50:39] 2025-12-16 02:41:49,147 | INFO     | . stage-in = 0 s
[2025-12-16 03:50:39] 2025-12-16 02:41:49,147 | INFO     | . payload execution = 37656 s
[2025-12-16 03:50:39] 2025-12-16 02:41:49,147 | INFO     | . stage-out = 1 s
[2025-12-16 03:50:39] 2025-12-16 02:41:49,147 | INFO     | . log creation = 0 s
[2025-12-16 03:50:39] 2025-12-16 02:41:49,147 | INFO     | ..............................
[2025-12-16 03:50:39] 2025-12-16 02:41:49,256 | INFO     | 
[2025-12-16 03:50:39] 2025-12-16 02:41:49,257 | INFO     | job summary report
[2025-12-16 03:50:39] 2025-12-16 02:41:49,257 | INFO     | --------------------------------------------------
[2025-12-16 03:50:39] 2025-12-16 02:41:49,257 | INFO     | PanDA job id: 6926683009
[2025-12-16 03:50:39] 2025-12-16 02:41:49,257 | INFO     | task id: 47866709
[2025-12-16 03:50:39] 2025-12-16 02:41:49,257 | INFO     | errors: (none)
[2025-12-16 03:50:39] 2025-12-16 02:41:49,257 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 03:50:39] 2025-12-16 02:41:49,257 | INFO     | pilot state: finished 
[2025-12-16 03:50:39] 2025-12-16 02:41:49,257 | INFO     | transexitcode: 0
[2025-12-16 03:50:39] 2025-12-16 02:41:49,257 | INFO     | exeerrorcode: 0
[2025-12-16 03:50:39] 2025-12-16 02:41:49,258 | INFO     | exeerrordiag: 
[2025-12-16 03:50:39] 2025-12-16 02:41:49,258 | INFO     | exitcode: 0
[2025-12-16 03:50:39] 2025-12-16 02:41:49,258 | INFO     | exitmsg: OK
[2025-12-16 03:50:39] 2025-12-16 02:41:49,258 | INFO     | cpuconsumptiontime: 148912 s
[2025-12-16 03:50:39] 2025-12-16 02:41:49,258 | INFO     | nevents: 1000
[2025-12-16 03:50:39] 2025-12-16 02:41:49,258 | INFO     | neventsw: 0
[2025-12-16 03:50:39] 2025-12-16 02:41:49,258 | INFO     | pid: 114820
[2025-12-16 03:50:39] 2025-12-16 02:41:49,258 | INFO     | pgrp: 114820
[2025-12-16 03:50:39] 2025-12-16 02:41:49,258 | INFO     | corecount: 4
[2025-12-16 03:50:39] 2025-12-16 02:41:49,258 | INFO     | event service: False
[2025-12-16 03:50:39] 2025-12-16 02:41:49,258 | INFO     | sizes: {0: 2284395, 1: 2284594, 5: 2284856, 12: 2284912, 37672: 2345579, 37674: 2354779, 37681: 2354997}
[2025-12-16 03:50:39] 2025-12-16 02:41:49,258 | INFO     | --------------------------------------------------
[2025-12-16 03:50:39] 2025-12-16 02:41:49,259 | INFO     | 
[2025-12-16 03:50:39] 2025-12-16 02:41:49,259 | INFO     | executing command: ls -lF /scratch/boinc/var/slot52/slots/0
[2025-12-16 03:50:39] 2025-12-16 02:41:49,278 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 03:50:39] 2025-12-16 02:41:49,279 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 03:50:39] 2025-12-16 02:41:49,279 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 03:50:39] 2025-12-16 02:41:49,279 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 03:50:39] 2025-12-16 02:41:49,279 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 03:50:39] 2025-12-16 02:41:49,279 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 03:50:39] 2025-12-16 02:41:49,279 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 03:50:39] 2025-12-16 02:41:49,279 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 03:50:39] 2025-12-16 02:41:49,279 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 03:50:39] 2025-12-16 02:41:49,279 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 03:50:39] 2025-12-16 02:41:49,279 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 03:50:39] 2025-12-16 02:41:49,280 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 03:50:39] 2025-12-16 02:41:49,280 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 03:50:39] 2025-12-16 02:41:49,280 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 03:50:39] 2025-12-16 02:41:49,280 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 03:50:39] 2025-12-16 02:41:49,280 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 03:50:39] 2025-12-16 02:41:49,280 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 03:50:39] 2025-12-16 02:41:49,280 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 03:50:39] 2025-12-16 02:41:49,280 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 03:50:39] 2025-12-16 02:41:49,280 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 03:50:39] 2025-12-16 02:41:49,281 | INFO     | job 6926683009 has completed (purged errors)
[2025-12-16 03:50:39] 2025-12-16 02:41:49,282 | INFO     | overall cleanup function is called
[2025-12-16 03:50:39] 2025-12-16 02:41:49,628 | INFO     | number of running child processes to parent process 114820: 1
[2025-12-16 03:50:39] 2025-12-16 02:41:49,628 | INFO     | maximum number of monitored processes: 12
[2025-12-16 03:50:39] 2025-12-16 02:41:49,629 | INFO     | aborting job monitoring since job object (job id=6926683009) has expired
[2025-12-16 03:50:39] 2025-12-16 02:41:50,298 | INFO     | --- collectZombieJob: --- 10, [114820]
[2025-12-16 03:50:39] 2025-12-16 02:41:50,298 | INFO     | zombie collector waiting for pid 114820
[2025-12-16 03:50:39] 2025-12-16 02:41:50,298 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 03:50:39] 2025-12-16 02:41:50,298 | INFO     | collected zombie processes
[2025-12-16 03:50:39] 2025-12-16 02:41:50,298 | INFO     | will attempt to kill all subprocesses of pid=114820
[2025-12-16 03:50:39] 2025-12-16 02:41:50,710 | INFO     | process IDs to be killed: [114820] (in reverse order)
[2025-12-16 03:50:39] 2025-12-16 02:41:50,825 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 03:50:39] 2025-12-16 02:41:50,826 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 03:50:39] 2025-12-16 02:41:50,839 | INFO     | did not find any defunct processes belonging to 114820
[2025-12-16 03:50:39] 2025-12-16 02:41:50,851 | INFO     | did not find any defunct processes belonging to 114820
[2025-12-16 03:50:39] 2025-12-16 02:41:50,852 | INFO     | ready for new job
[2025-12-16 03:50:39] 2025-12-16 02:41:50,852 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 03:50:39] 2025-12-16 02:41:50,856 | INFO     | ***************************************
[2025-12-16 03:50:39] 2025-12-16 02:41:50,856 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 03:50:39] 2025-12-16 02:41:50,856 | INFO     | ***************************************
[2025-12-16 03:50:39] 2025-12-16 02:41:50,857 | INFO     | 
[2025-12-16 03:50:39] 2025-12-16 02:41:50,861 | INFO     | architecture information:
[2025-12-16 03:50:39] 2025-12-16 02:41:50,861 | INFO     | executing command: cat /etc/os-release
[2025-12-16 03:50:39] 2025-12-16 02:41:50,877 | INFO     | cat /etc/os-release:
[2025-12-16 03:50:39] NAME="CentOS Linux"
[2025-12-16 03:50:39] VERSION="7 (Core)"
[2025-12-16 03:50:39] ID="centos"
[2025-12-16 03:50:39] ID_LIKE="rhel fedora"
[2025-12-16 03:50:39] VERSION_ID="7"
[2025-12-16 03:50:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 03:50:39] ANSI_COLOR="0;31"
[2025-12-16 03:50:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 03:50:39] HOME_URL="https://www.centos.org/"
[2025-12-16 03:50:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 03:50:39] 
[2025-12-16 03:50:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 03:50:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 03:50:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 03:50:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 03:50:39] 
[2025-12-16 03:50:39] 2025-12-16 02:41:50,877 | INFO     | ***************************************
[2025-12-16 03:50:39] 2025-12-16 02:41:51,380 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/0
[2025-12-16 03:50:39] 2025-12-16 02:41:51,397 | INFO     | sufficient remaining disk space (637240606720 B)
[2025-12-16 03:50:39] 2025-12-16 02:41:51,397 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 03:50:39] 2025-12-16 02:41:51,398 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 03:50:39] 2025-12-16 02:41:51,398 | INFO     | update_server=False
[2025-12-16 03:50:39] 2025-12-16 02:41:51,398 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 03:50:39] 2025-12-16 02:41:51,398 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 03:50:39] 2025-12-16 02:41:51,398 | INFO     | aborting loop
[2025-12-16 03:50:39] 2025-12-16 02:41:51,501 | INFO     | all data control threads have been joined
[2025-12-16 03:50:39] 2025-12-16 02:41:51,722 | INFO     | all job control threads have been joined
[2025-12-16 03:50:39] 2025-12-16 02:41:52,403 | INFO     | [job] retrieve thread has finished
[2025-12-16 03:50:39] 2025-12-16 02:41:52,404 | INFO     | [job] job monitor thread has finished
[2025-12-16 03:50:39] 2025-12-16 02:41:52,414 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 03:50:39] 2025-12-16 02:41:52,470 | INFO     | all payload control threads have been joined
[2025-12-16 03:50:39] 2025-12-16 02:41:52,506 | INFO     | [data] control thread has finished
[2025-12-16 03:50:39] 2025-12-16 02:41:52,511 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 03:50:39] 2025-12-16 02:41:52,652 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 03:50:39] 2025-12-16 02:41:52,728 | INFO     | [job] control thread has finished
[2025-12-16 03:50:39] 2025-12-16 02:41:52,790 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 03:50:39] 2025-12-16 02:41:52,961 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 03:50:39] 2025-12-16 02:41:52,963 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 03:50:39] 2025-12-16 02:41:52,988 | INFO     | [payload] failed_post thread has finished
[2025-12-16 03:50:39] 2025-12-16 02:41:53,132 | INFO     | [data] copytool_in thread has finished
[2025-12-16 03:50:39] 2025-12-16 02:41:53,197 | INFO     | [job] validate thread has finished
[2025-12-16 03:50:39] 2025-12-16 02:41:53,476 | INFO     | [payload] control thread has finished
[2025-12-16 03:50:39] 2025-12-16 02:41:53,699 | INFO     | [payload] validate_post thread has finished
[2025-12-16 03:50:39] 2025-12-16 02:41:54,266 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 03:50:39] 2025-12-16 02:41:54,420 | INFO     | [data] copytool_out thread has finished
[2025-12-16 03:50:39] 2025-12-16 02:41:55,268 | INFO     | [job] queue monitor thread has finished
[2025-12-16 03:50:39] 2025-12-16 02:41:56,517 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 03:50:39] 2025-12-16 02:42:20,949 | INFO     | PID=107106 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 03:50:39] 2025-12-16 02:42:20,950 | INFO     | .. there are 4 such processes running
[2025-12-16 03:50:39] 2025-12-16 02:42:20,950 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 03:50:39] 2025-12-16 02:42:20,950 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 03:50:39] 2025-12-16 02:42:20,951 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 03:50:39] 2025-12-16 02:42:32,334 | INFO     | [monitor] cgroup control has ended
[2025-12-16 03:50:39] 2025-12-16 02:42:33,370 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22785513342784)>', '<ExcThread(monitor, started 22785277531904)>']
[2025-12-16 03:50:39] 2025-12-16 02:42:34,016 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 03:50:39] 2025-12-16 02:42:34,016 | INFO     | [monitor] control thread has ended
[2025-12-16 03:50:39] 2025-12-16 02:42:38,394 | INFO     | all workflow threads have been joined
[2025-12-16 03:50:39] 2025-12-16 02:42:38,395 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 03:50:39] 2025-12-16 02:42:38,395 | INFO     | traces error code: 0
[2025-12-16 03:50:39] 2025-12-16 02:42:38,395 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 03:50:39] 2025-12-16 02:42:38,544 [wrapper] ==== pilot stdout END ====
[2025-12-16 03:50:39] 2025-12-16 02:42:38,547 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 03:50:39] 2025-12-16 02:42:38,550 [wrapper] pilotpid: 107106
[2025-12-16 03:50:39] 2025-12-16 02:42:38,553 [wrapper] Pilot exit status: 0
[2025-12-16 03:50:39] 2025-12-16 02:42:38,564 [wrapper] pandaids: 6926683009
[2025-12-16 03:50:39] 2025-12-16 02:42:38,639 [wrapper] cleanup supervisor_pilot  685811 107107
[2025-12-16 03:50:39] 2025-12-16 02:42:38,642 [wrapper] Test setup, not cleaning
[2025-12-16 03:50:39] 2025-12-16 02:42:38,645 [wrapper] apfmon messages muted
[2025-12-16 03:50:39] 2025-12-16 02:42:38,648 [wrapper] ==== wrapper stdout END ====
[2025-12-16 03:50:39] 2025-12-16 02:42:38,650 [wrapper] ==== wrapper stderr END ====
[2025-12-16 03:50:39]  *** Error codes and diagnostics ***
[2025-12-16 03:50:39]     "exeErrorCode": 0,
[2025-12-16 03:50:39]     "exeErrorDiag": "",
[2025-12-16 03:50:39]     "pilotErrorCode": 0,
[2025-12-16 03:50:39]     "pilotErrorDiag": "",
[2025-12-16 03:50:39]  *** Listing of results directory ***
[2025-12-16 03:50:39] total 911872
[2025-12-16 03:50:39] -rw-r--r-- 1 boinc boinc    579449 Dec 11 11:23 pilot3.tar.gz
[2025-12-16 03:50:39] -rw-r--r-- 1 boinc boinc      5112 Dec 11 11:38 queuedata.json
[2025-12-16 03:50:39] -rwx------ 1 boinc boinc     36292 Dec 11 11:40 runpilot2-wrapper.sh
[2025-12-16 03:50:39] -rw-r--r-- 1 boinc boinc       100 Dec 15 17:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 03:50:39] -rwxr-xr-x 1 boinc boinc      7986 Dec 15 17:13 run_atlas
[2025-12-16 03:50:39] -rw-r--r-- 1 boinc boinc       105 Dec 15 17:13 job.xml
[2025-12-16 03:50:39] -rw-r--r-- 1 boinc boinc      6638 Dec 15 17:13 init_data.xml
[2025-12-16 03:50:39] -rw-r--r-- 2 boinc boinc 328161159 Dec 15 17:13 EVNT.47866705._000010.pool.root.1
[2025-12-16 03:50:39] -rw-r--r-- 2 boinc boinc     15847 Dec 15 17:13 start_atlas.sh
[2025-12-16 03:50:39] drwxrwx--x 2 boinc boinc      4096 Dec 15 17:13 shared
[2025-12-16 03:50:39] -rw-r--r-- 2 boinc boinc    592580 Dec 15 17:13 input.tar.gz
[2025-12-16 03:50:39] -rw-r--r-- 1 boinc boinc         0 Dec 15 17:13 boinc_lockfile
[2025-12-16 03:50:39] -rw-r--r-- 1 boinc boinc      2845 Dec 15 17:13 pandaJob.out
[2025-12-16 03:50:39] -rw------- 1 boinc boinc    994489 Dec 15 17:13 agis_schedconf.cvmfs.json
[2025-12-16 03:50:39] drwx------ 5 boinc boinc      4096 Dec 15 17:13 pilot3
[2025-12-16 03:50:39] -rw-r--r-- 1 boinc boinc       531 Dec 16 03:36 boinc_task_state.xml
[2025-12-16 03:50:39] -rw------- 1 boinc boinc 588055102 Dec 16 03:41 HITS.47866709._000039.pool.root.1
[2025-12-16 03:50:39] -rw------- 1 boinc boinc      1043 Dec 16 03:41 memory_monitor_summary.json
[2025-12-16 03:50:39] -rw------- 1 boinc boinc   1516240 Dec 16 03:41 agis_ddmendpoints.agis.ALL.json
[2025-12-16 03:50:39] -rw------- 1 boinc boinc   1497785 Dec 16 03:41 log.47866709._000039.job.log.tgz.1
[2025-12-16 03:50:39] -rw------- 1 boinc boinc     27519 Dec 16 03:41 heartbeat.json
[2025-12-16 03:50:39] -rw------- 1 boinc boinc        95 Dec 16 03:42 pilot_heartbeat.json
[2025-12-16 03:50:39] -rw------- 1 boinc boinc      4832 Dec 16 03:42 pilotlog.txt
[2025-12-16 03:50:39] -rw------- 1 boinc boinc   5290782 Dec 16 03:42 log.47866709._000039.job.log.1
[2025-12-16 03:50:39] -rw------- 1 boinc boinc       353 Dec 16 03:42 output.list
[2025-12-16 03:50:39] -rw-r--r-- 1 boinc boinc       620 Dec 16 03:42 runtime_log
[2025-12-16 03:50:39] -rw------- 1 boinc boinc   6830080 Dec 16 03:42 result.tar.gz
[2025-12-16 03:50:39] -rw------- 1 boinc boinc       669 Dec 16 03:42 vYVLDmmGtn8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrBNKDmoJaOMn.diag
[2025-12-16 03:50:39] -rw-r--r-- 1 boinc boinc      9206 Dec 16 03:42 runtime_log.err
[2025-12-16 03:50:39] -rw-r--r-- 1 boinc boinc        27 Dec 16 03:50 wrapper_checkpoint.txt
[2025-12-16 03:50:39] -rw-r--r-- 1 boinc boinc      8192 Dec 16 03:50 boinc_mmap_file
[2025-12-16 03:50:39] -rw-r--r-- 1 boinc boinc     21099 Dec 16 03:50 stderr.txt
[2025-12-16 03:50:39] HITS file was successfully produced:
[2025-12-16 03:50:39] -rw------- 1 boinc boinc 588055102 Dec 16 03:41 shared/HITS.pool.root.1
[2025-12-16 03:50:39]  *** Contents of shared directory: ***
[2025-12-16 03:50:39] total 902024
[2025-12-16 03:50:39] -rw-r--r-- 2 boinc boinc 328161159 Dec 15 17:13 ATLAS.root_0
[2025-12-16 03:50:39] -rw-r--r-- 2 boinc boinc     15847 Dec 15 17:13 start_atlas.sh
[2025-12-16 03:50:39] -rw-r--r-- 2 boinc boinc    592580 Dec 15 17:13 input.tar.gz
[2025-12-16 03:50:39] -rw------- 1 boinc boinc 588055102 Dec 16 03:41 HITS.pool.root.1
[2025-12-16 03:50:39] -rw------- 1 boinc boinc   6830080 Dec 16 03:42 result.tar.gz
03:50:41 (102923): run_atlas exited; CPU time 150285.240607
03:50:41 (102923): called boinc_finish(0)

</stderr_txt>
]]>

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