Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:34:16 (2133573): wrapper (7.7.26015): starting
23:34:16 (2133573): wrapper: running run_atlas (--nthreads 4)
[2025-12-11 23:34:16] Arguments: --nthreads 4
[2025-12-11 23:34:16] Threads: 4
[2025-12-11 23:34:16] Checking for CVMFS
[2025-12-11 23:34:16] No cvmfs_config command found, will try listing directly
[2025-12-11 23:34:16] CVMFS is ok
[2025-12-11 23:34:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-11 23:34:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-11 23:34:16] Further information can be found at the LHC@home message board.
[2025-12-11 23:34:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-11 23:34:16] Checking for apptainer binary...
[2025-12-11 23:34:16] which: no apptainer in ((null))
[2025-12-11 23:34:16] apptainer is not installed, using version from CVMFS
[2025-12-11 23:34:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-11 23:34:16] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2025-12-11 23:34:16] apptainer works
[2025-12-11 23:34:16] Set ATHENA_PROC_NUMBER=4
[2025-12-11 23:34:16] Set ATHENA_CORE_NUMBER=4
[2025-12-11 23:34:16] Starting ATLAS job with PandaID=6926682444
[2025-12-11 23:34:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:10:15 (2334131): wrapper (7.7.26015): starting
04:10:15 (2334131): wrapper: running run_atlas (--nthreads 4)
[2025-12-12 04:10:15] Arguments: --nthreads 4
[2025-12-12 04:10:15] Threads: 4
[2025-12-12 04:10:15] This job has been restarted, cleaning up previous attempt
[2025-12-12 04:10:15] Checking for CVMFS
[2025-12-12 04:10:15] No cvmfs_config command found, will try listing directly
[2025-12-12 04:10:15] CVMFS is ok
[2025-12-12 04:10:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-12 04:10:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-12 04:10:15] Further information can be found at the LHC@home message board.
[2025-12-12 04:10:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-12 04:10:15] Checking for apptainer binary...
[2025-12-12 04:10:15] which: no apptainer in ((null))
[2025-12-12 04:10:15] apptainer is not installed, using version from CVMFS
[2025-12-12 04:10:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-12 04:10:16] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2025-12-12 04:10:16] apptainer works
[2025-12-12 04:10:16] Set ATHENA_PROC_NUMBER=4
[2025-12-12 04:10:16] Set ATHENA_CORE_NUMBER=4
[2025-12-12 04:10:16] Starting ATLAS job with PandaID=6926682444
[2025-12-12 04:10:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-12 15:30:11]  *** The last 200 lines of the pilot log: ***
[2025-12-12 15:30:11] 2025-12-12 14:19:00,647 | INFO     | monitor loop #2886: job 0:6926682444 is in state 'finished'
[2025-12-12 15:30:11] 2025-12-12 14:19:00,647 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-12 15:30:11] 2025-12-12 14:19:01,116 | INFO     | time since job start (40115s) is within the limit (174528.0s)
[2025-12-12 15:30:11] 2025-12-12 14:19:02,520 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-12 15:30:11] 2025-12-12 14:19:02,531 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2571.2183281250013
[2025-12-12 15:30:11] 2025-12-12 14:19:02,544 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6926682444/memory_monitor_summary.json (trf name=prmon)
[2025-12-12 15:30:11] 2025-12-12 14:19:02,545 | INFO     | extracted standard info from prmon json
[2025-12-12 15:30:11] 2025-12-12 14:19:02,545 | INFO     | extracted standard memory fields from prmon json
[2025-12-12 15:30:11] 2025-12-12 14:19:02,546 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-12 15:30:11] 2025-12-12 14:19:02,558 | INFO     | fitting pss+swap vs Time
[2025-12-12 15:30:11] 2025-12-12 14:19:02,559 | INFO     | sum of square deviations: 87937380888.0
[2025-12-12 15:30:11] 2025-12-12 14:19:02,569 | INFO     | sum of deviations: 314724297187.99994
[2025-12-12 15:30:11] 2025-12-12 14:19:02,569 | INFO     | mean x: 1765529066.0
[2025-12-12 15:30:11] 2025-12-12 14:19:02,570 | INFO     | mean y: 2666784.6057838663
[2025-12-12 15:30:11] 2025-12-12 14:19:02,570 | INFO     | intersect: -6316089685.632245
[2025-12-12 15:30:11] 2025-12-12 14:19:02,571 | INFO     | chi2: 4.423875452324585
[2025-12-12 15:30:11] 2025-12-12 14:19:02,572 | INFO     | sum of square deviations: 85944915623.0
[2025-12-12 15:30:11] 2025-12-12 14:19:02,581 | INFO     | sum of deviations: 459573528195.49994
[2025-12-12 15:30:11] 2025-12-12 14:19:02,582 | INFO     | mean x: 1765528913.5
[2025-12-12 15:30:11] 2025-12-12 14:19:02,582 | INFO     | mean y: 2677852.486196319
[2025-12-12 15:30:11] 2025-12-12 14:19:02,582 | INFO     | intersect: -9438140676.76283
[2025-12-12 15:30:11] 2025-12-12 14:19:02,583 | INFO     | chi2: 2.5081586373201143
[2025-12-12 15:30:11] 2025-12-12 14:19:02,583 | INFO     | current chi2=2.5081586373201143 (change=43.30404044259048 %)
[2025-12-12 15:30:11] 2025-12-12 14:19:02,584 | INFO     | sum of square deviations: 83982776508.0
[2025-12-12 15:30:11] 2025-12-12 14:19:02,594 | INFO     | sum of deviations: 466785090722.00006
[2025-12-12 15:30:11] 2025-12-12 14:19:02,594 | INFO     | mean x: 1765528761.0
[2025-12-12 15:30:11] 2025-12-12 14:19:02,594 | INFO     | mean y: 2678407.1051004636
[2025-12-12 15:30:11] 2025-12-12 14:19:02,594 | INFO     | intersect: -9810315841.747595
[2025-12-12 15:30:11] 2025-12-12 14:19:02,595 | INFO     | chi2: 2.4510926310508987
[2025-12-12 15:30:11] 2025-12-12 14:19:02,595 | INFO     | current chi2=2.4510926310508987 (change=2.2752151885491907 %)
[2025-12-12 15:30:11] 2025-12-12 14:19:02,596 | INFO     | right removable region: 646
[2025-12-12 15:30:11] 2025-12-12 14:19:02,596 | INFO     | sum of square deviations: 85944915623.0
[2025-12-12 15:30:11] 2025-12-12 14:19:02,606 | INFO     | sum of deviations: 147192777136.5
[2025-12-12 15:30:11] 2025-12-12 14:19:02,607 | INFO     | mean x: 1765529218.5
[2025-12-12 15:30:11] 2025-12-12 14:19:02,607 | INFO     | mean y: 2679581.9739263803
[2025-12-12 15:30:11] 2025-12-12 14:19:02,607 | INFO     | intersect: -3021037957.369425
[2025-12-12 15:30:11] 2025-12-12 14:19:02,608 | INFO     | chi2: 2.0620463973518635
[2025-12-12 15:30:11] 2025-12-12 14:19:02,608 | INFO     | current chi2=2.0620463973518635 (change=53.38823573190032 %)
[2025-12-12 15:30:11] 2025-12-12 14:19:02,609 | INFO     | sum of square deviations: 83982776508.0
[2025-12-12 15:30:11] 2025-12-12 14:19:02,618 | INFO     | sum of deviations: 126785549308.00006
[2025-12-12 15:30:11] 2025-12-12 14:19:02,619 | INFO     | mean x: 1765529371.0
[2025-12-12 15:30:11] 2025-12-12 14:19:02,619 | INFO     | mean y: 2681167.2596599692
[2025-12-12 15:30:11] 2025-12-12 14:19:02,619 | INFO     | intersect: -2662670234.885517
[2025-12-12 15:30:11] 2025-12-12 14:19:02,620 | INFO     | chi2: 2.0436578447577296
[2025-12-12 15:30:11] 2025-12-12 14:19:02,620 | INFO     | current chi2=2.0436578447577296 (change=0.8917623103800641 %)
[2025-12-12 15:30:11] 2025-12-12 14:19:02,620 | INFO     | left removable region: 20
[2025-12-12 15:30:11] 2025-12-12 14:19:02,621 | INFO     | sum of square deviations: 76067705312.5
[2025-12-12 15:30:11] 2025-12-12 14:19:02,630 | INFO     | sum of deviations: 249656348982.49997
[2025-12-12 15:30:11] 2025-12-12 14:19:02,630 | INFO     | mean x: 1765529340.5
[2025-12-12 15:30:11] 2025-12-12 14:19:02,631 | INFO     | mean y: 2695525.7044728436
[2025-12-12 15:30:11] 2025-12-12 14:19:02,631 | INFO     | intersect: -5791821442.566418
[2025-12-12 15:30:11] 2025-12-12 14:19:02,632 | INFO     | chi2: 0.04229467333123007
[2025-12-12 15:30:11] 2025-12-12 14:19:02,632 | INFO     | current memory leak: 3.28 B/s (using 626 data points, chi2=0.04)
[2025-12-12 15:30:11] 2025-12-12 14:19:02,633 | INFO     | could have reported an average CPU frequency of 2626 MHz (26 samples)
[2025-12-12 15:30:11] 2025-12-12 14:19:02,633 | INFO     | ..............................
[2025-12-12 15:30:11] 2025-12-12 14:19:02,633 | INFO     | . Timing measurements:
[2025-12-12 15:30:11] 2025-12-12 14:19:02,633 | INFO     | . get job = 0 s
[2025-12-12 15:30:11] 2025-12-12 14:19:02,633 | INFO     | . initial setup = 1 s
[2025-12-12 15:30:11] 2025-12-12 14:19:02,633 | INFO     | . payload setup = 10 s
[2025-12-12 15:30:11] 2025-12-12 14:19:02,633 | INFO     | . stage-in = 0 s
[2025-12-12 15:30:11] 2025-12-12 14:19:02,634 | INFO     | . payload execution = 40074 s
[2025-12-12 15:30:11] 2025-12-12 14:19:02,634 | INFO     | . stage-out = 2 s
[2025-12-12 15:30:11] 2025-12-12 14:19:02,634 | INFO     | . log creation = 0 s
[2025-12-12 15:30:11] 2025-12-12 14:19:02,634 | INFO     | ..............................
[2025-12-12 15:30:11] 2025-12-12 14:19:02,736 | INFO     | 
[2025-12-12 15:30:11] 2025-12-12 14:19:02,736 | INFO     | job summary report
[2025-12-12 15:30:11] 2025-12-12 14:19:02,736 | INFO     | --------------------------------------------------
[2025-12-12 15:30:11] 2025-12-12 14:19:02,736 | INFO     | PanDA job id: 6926682444
[2025-12-12 15:30:11] 2025-12-12 14:19:02,736 | INFO     | task id: 47866687
[2025-12-12 15:30:11] 2025-12-12 14:19:02,736 | INFO     | errors: (none)
[2025-12-12 15:30:11] 2025-12-12 14:19:02,736 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-12 15:30:11] 2025-12-12 14:19:02,736 | INFO     | pilot state: finished 
[2025-12-12 15:30:11] 2025-12-12 14:19:02,736 | INFO     | transexitcode: 0
[2025-12-12 15:30:11] 2025-12-12 14:19:02,736 | INFO     | exeerrorcode: 0
[2025-12-12 15:30:11] 2025-12-12 14:19:02,737 | INFO     | exeerrordiag: 
[2025-12-12 15:30:11] 2025-12-12 14:19:02,737 | INFO     | exitcode: 0
[2025-12-12 15:30:11] 2025-12-12 14:19:02,737 | INFO     | exitmsg: OK
[2025-12-12 15:30:11] 2025-12-12 14:19:02,737 | INFO     | cpuconsumptiontime: 158178 s
[2025-12-12 15:30:11] 2025-12-12 14:19:02,737 | INFO     | nevents: 1000
[2025-12-12 15:30:11] 2025-12-12 14:19:02,737 | INFO     | neventsw: 0
[2025-12-12 15:30:11] 2025-12-12 14:19:02,737 | INFO     | pid: 2345951
[2025-12-12 15:30:11] 2025-12-12 14:19:02,737 | INFO     | pgrp: 2345951
[2025-12-12 15:30:11] 2025-12-12 14:19:02,737 | INFO     | corecount: 4
[2025-12-12 15:30:11] 2025-12-12 14:19:02,737 | INFO     | event service: False
[2025-12-12 15:30:11] 2025-12-12 14:19:02,737 | INFO     | sizes: {0: 2284399, 1: 2284598, 5: 2284860, 11: 2284916, 40088: 2347072, 40091: 2356088, 40095: 2356272, 40100: 2356518}
[2025-12-12 15:30:11] 2025-12-12 14:19:02,737 | INFO     | --------------------------------------------------
[2025-12-12 15:30:11] 2025-12-12 14:19:02,737 | INFO     | 
[2025-12-12 15:30:11] 2025-12-12 14:19:02,737 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2025-12-12 15:30:11] 2025-12-12 14:19:02,756 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-12 15:30:11] 2025-12-12 14:19:02,757 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-12 15:30:11] 2025-12-12 14:19:02,757 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-12 15:30:11] 2025-12-12 14:19:02,757 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-12 15:30:11] 2025-12-12 14:19:02,757 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-12 15:30:11] 2025-12-12 14:19:02,757 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-12 15:30:11] 2025-12-12 14:19:02,757 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-12 15:30:11] 2025-12-12 14:19:02,757 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-12 15:30:11] 2025-12-12 14:19:02,757 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-12 15:30:11] 2025-12-12 14:19:02,757 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-12 15:30:11] 2025-12-12 14:19:02,758 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-12 15:30:11] 2025-12-12 14:19:02,758 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-12 15:30:11] 2025-12-12 14:19:02,758 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-12 15:30:11] 2025-12-12 14:19:02,758 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-12 15:30:11] 2025-12-12 14:19:02,758 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-12 15:30:11] 2025-12-12 14:19:02,758 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-12 15:30:11] 2025-12-12 14:19:02,758 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-12 15:30:11] 2025-12-12 14:19:02,758 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-12 15:30:11] 2025-12-12 14:19:02,758 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-12 15:30:11] 2025-12-12 14:19:02,758 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-12 15:30:11] 2025-12-12 14:19:02,758 | INFO     | job 6926682444 has completed (purged errors)
[2025-12-12 15:30:11] 2025-12-12 14:19:02,759 | INFO     | overall cleanup function is called
[2025-12-12 15:30:11] 2025-12-12 14:19:03,774 | INFO     | --- collectZombieJob: --- 10, [2345951]
[2025-12-12 15:30:11] 2025-12-12 14:19:03,774 | INFO     | zombie collector waiting for pid 2345951
[2025-12-12 15:30:11] 2025-12-12 14:19:03,774 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-12 15:30:11] 2025-12-12 14:19:03,774 | INFO     | collected zombie processes
[2025-12-12 15:30:11] 2025-12-12 14:19:03,774 | INFO     | will attempt to kill all subprocesses of pid=2345951
[2025-12-12 15:30:11] 2025-12-12 14:19:04,183 | INFO     | process IDs to be killed: [2345951] (in reverse order)
[2025-12-12 15:30:11] 2025-12-12 14:19:04,304 | WARNING  | found no corresponding commands to process id(s)
[2025-12-12 15:30:11] 2025-12-12 14:19:04,304 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-12 15:30:11] 2025-12-12 14:19:04,321 | INFO     | did not find any defunct processes belonging to 2345951
[2025-12-12 15:30:11] 2025-12-12 14:19:04,336 | INFO     | did not find any defunct processes belonging to 2345951
[2025-12-12 15:30:11] 2025-12-12 14:19:04,337 | INFO     | ready for new job
[2025-12-12 15:30:11] 2025-12-12 14:19:04,337 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-12 15:30:11] 2025-12-12 14:19:04,341 | INFO     | ***************************************
[2025-12-12 15:30:11] 2025-12-12 14:19:04,342 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-12 15:30:11] 2025-12-12 14:19:04,342 | INFO     | ***************************************
[2025-12-12 15:30:11] 2025-12-12 14:19:04,342 | INFO     | 
[2025-12-12 15:30:11] 2025-12-12 14:19:04,346 | INFO     | architecture information:
[2025-12-12 15:30:11] 2025-12-12 14:19:04,347 | INFO     | executing command: cat /etc/os-release
[2025-12-12 15:30:11] 2025-12-12 14:19:04,362 | INFO     | cat /etc/os-release:
[2025-12-12 15:30:11] NAME="CentOS Linux"
[2025-12-12 15:30:11] VERSION="7 (Core)"
[2025-12-12 15:30:11] ID="centos"
[2025-12-12 15:30:11] ID_LIKE="rhel fedora"
[2025-12-12 15:30:11] VERSION_ID="7"
[2025-12-12 15:30:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-12 15:30:11] ANSI_COLOR="0;31"
[2025-12-12 15:30:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-12 15:30:11] HOME_URL="https://www.centos.org/"
[2025-12-12 15:30:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-12 15:30:11] 
[2025-12-12 15:30:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-12 15:30:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-12 15:30:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-12 15:30:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-12 15:30:11] 
[2025-12-12 15:30:11] 2025-12-12 14:19:04,363 | INFO     | ***************************************
[2025-12-12 15:30:11] 2025-12-12 14:19:04,865 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-12-12 15:30:11] 2025-12-12 14:19:04,883 | INFO     | sufficient remaining disk space (685024215040 B)
[2025-12-12 15:30:11] 2025-12-12 14:19:04,883 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-12 15:30:11] 2025-12-12 14:19:04,883 | INFO     | current server update state: UPDATING_FINAL
[2025-12-12 15:30:11] 2025-12-12 14:19:04,883 | INFO     | update_server=False
[2025-12-12 15:30:11] 2025-12-12 14:19:04,884 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-12 15:30:11] 2025-12-12 14:19:04,884 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-12 15:30:11] 2025-12-12 14:19:04,884 | INFO     | aborting loop
[2025-12-12 15:30:11] 2025-12-12 14:19:04,884 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-12 15:30:11] 2025-12-12 14:19:05,356 | INFO     | all data control threads have been joined
[2025-12-12 15:30:11] 2025-12-12 14:19:05,679 | INFO     | all payload control threads have been joined
[2025-12-12 15:30:11] 2025-12-12 14:19:05,885 | INFO     | [job] job monitor thread has finished
[2025-12-12 15:30:11] 2025-12-12 14:19:05,886 | INFO     | [job] retrieve thread has finished
[2025-12-12 15:30:11] 2025-12-12 14:19:05,978 | INFO     | all job control threads have been joined
[2025-12-12 15:30:11] 2025-12-12 14:19:06,248 | INFO     | [payload] failed_post thread has finished
[2025-12-12 15:30:11] 2025-12-12 14:19:06,362 | INFO     | [data] control thread has finished
[2025-12-12 15:30:11] 2025-12-12 14:19:06,462 | INFO     | [payload] validate_post thread has finished
[2025-12-12 15:30:11] 2025-12-12 14:19:06,685 | INFO     | [payload] control thread has finished
[2025-12-12 15:30:11] 2025-12-12 14:19:06,731 | INFO     | [data] copytool_in thread has finished
[2025-12-12 15:30:11] 2025-12-12 14:19:06,731 | INFO     | [payload] validate_pre thread has finished
[2025-12-12 15:30:11] 2025-12-12 14:19:06,769 | INFO     | [job] validate thread has finished
[2025-12-12 15:30:11] 2025-12-12 14:19:06,891 | INFO     | [data] copytool_out thread has finished
[2025-12-12 15:30:11] 2025-12-12 14:19:06,983 | INFO     | [job] control thread has finished
[2025-12-12 15:30:11] 2025-12-12 14:19:07,037 | INFO     | [payload] execute_payloads thread has finished
[2025-12-12 15:30:11] 2025-12-12 14:19:07,068 | INFO     | [job] create_data_payload thread has finished
[2025-12-12 15:30:11] 2025-12-12 14:19:07,746 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-12 15:30:11] 2025-12-12 14:19:08,150 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-12 15:30:11] 2025-12-12 14:19:08,751 | INFO     | [job] queue monitor thread has finished
[2025-12-12 15:30:11] 2025-12-12 14:19:12,156 | INFO     | [data] queue_monitor thread has finished
[2025-12-12 15:30:11] 2025-12-12 14:19:15,548 | INFO     | job.realtimelogging is not enabled
[2025-12-12 15:30:11] 2025-12-12 14:19:16,553 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-12 15:30:11] 2025-12-12 14:19:30,043 | INFO     | [monitor] cgroup control has ended
[2025-12-12 15:30:11] 2025-12-12 14:19:30,770 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22806295422784)>', '<ExcThread(monitor, started 22806054004480)>']
[2025-12-12 15:30:11] 2025-12-12 14:19:34,686 | INFO     | PID=2338333 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-12 15:30:11] 2025-12-12 14:19:34,686 | INFO     | .. there are 3 such processes running
[2025-12-12 15:30:11] 2025-12-12 14:19:34,687 | INFO     | found 0 job(s) in 20 queues
[2025-12-12 15:30:11] 2025-12-12 14:19:34,687 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-12 15:30:11] 2025-12-12 14:19:34,688 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-12 15:30:11] 2025-12-12 14:19:34,688 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-12 15:30:11] 2025-12-12 14:19:34,688 | INFO     | [monitor] control thread has ended
[2025-12-12 15:30:11] 2025-12-12 14:19:35,795 | INFO     | all workflow threads have been joined
[2025-12-12 15:30:11] 2025-12-12 14:19:35,797 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-12 15:30:11] 2025-12-12 14:19:35,797 | INFO     | traces error code: 0
[2025-12-12 15:30:11] 2025-12-12 14:19:35,797 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-12 15:30:11] 2025-12-12 14:19:35,985 [wrapper] ==== pilot stdout END ====
[2025-12-12 15:30:11] 2025-12-12 14:19:35,989 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-12 15:30:11] 2025-12-12 14:19:35,992 [wrapper] pilotpid: 2338333
[2025-12-12 15:30:11] 2025-12-12 14:19:35,995 [wrapper] Pilot exit status: 0
[2025-12-12 15:30:11] 2025-12-12 14:19:36,008 [wrapper] pandaids: 6926682444 6926682444
[2025-12-12 15:30:11] 2025-12-12 14:19:36,088 [wrapper] cleanup supervisor_pilot 2829952 2338334
[2025-12-12 15:30:11] 2025-12-12 14:19:36,092 [wrapper] Test setup, not cleaning
[2025-12-12 15:30:11] 2025-12-12 14:19:36,095 [wrapper] apfmon messages muted
[2025-12-12 15:30:11] 2025-12-12 14:19:36,098 [wrapper] ==== wrapper stdout END ====
[2025-12-12 15:30:11] 2025-12-12 14:19:36,101 [wrapper] ==== wrapper stderr END ====
[2025-12-12 15:30:11]  *** Error codes and diagnostics ***
[2025-12-12 15:30:11]     "exeErrorCode": 0,
[2025-12-12 15:30:11]     "exeErrorDiag": "",
[2025-12-12 15:30:11]     "pilotErrorCode": 0,
[2025-12-12 15:30:11]     "pilotErrorDiag": "",
[2025-12-12 15:30:11]  *** Listing of results directory ***
[2025-12-12 15:30:11] total 1251568
[2025-12-12 15:30:11] drwx------ 5 boinc boinc      4096 Dec  3 15:30 pilot3
[2025-12-12 15:30:11] -rw-r--r-- 1 boinc boinc    579449 Dec 11 11:23 pilot3.tar.gz
[2025-12-12 15:30:11] -rw-r--r-- 1 boinc boinc      5112 Dec 11 11:38 queuedata.json
[2025-12-12 15:30:11] -rwx------ 1 boinc boinc     36292 Dec 11 11:39 runpilot2-wrapper.sh
[2025-12-12 15:30:11] -rw-r--r-- 1 boinc boinc       100 Dec 11 23:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-12 15:30:11] -rwxr-xr-x 1 boinc boinc      7986 Dec 11 23:34 run_atlas
[2025-12-12 15:30:11] -rw-r--r-- 1 boinc boinc       105 Dec 11 23:34 job.xml
[2025-12-12 15:30:11] -rw-r--r-- 3 boinc boinc 328333826 Dec 11 23:34 EVNT.47866683._000033.pool.root.1
[2025-12-12 15:30:11] -rw-r--r-- 3 boinc boinc 328333826 Dec 11 23:34 ATLAS.root_0
[2025-12-12 15:30:11] -rw-r--r-- 2 boinc boinc     15847 Dec 11 23:34 start_atlas.sh
[2025-12-12 15:30:11] drwxrwx--x 2 boinc boinc      4096 Dec 11 23:34 shared
[2025-12-12 15:30:11] -rw-r--r-- 2 boinc boinc    592585 Dec 11 23:34 input.tar.gz
[2025-12-12 15:30:11] -rw-r--r-- 1 boinc boinc         0 Dec 11 23:34 boinc_lockfile
[2025-12-12 15:30:11] -rw-r--r-- 1 boinc boinc      2847 Dec 12 04:10 pandaJob.out
[2025-12-12 15:30:11] -rw------- 1 boinc boinc    990101 Dec 12 04:10 agis_schedconf.cvmfs.json
[2025-12-12 15:30:11] -rw-r--r-- 1 boinc boinc      6645 Dec 12 05:35 init_data.xml
[2025-12-12 15:30:11] -rw-r--r-- 1 boinc boinc       531 Dec 12 15:12 boinc_task_state.xml
[2025-12-12 15:30:11] -rw------- 1 boinc boinc 606634489 Dec 12 15:18 HITS.47866687._000323.pool.root.1
[2025-12-12 15:30:11] -rw------- 1 boinc boinc      1040 Dec 12 15:18 memory_monitor_summary.json
[2025-12-12 15:30:11] -rw------- 1 boinc boinc   1516240 Dec 12 15:18 agis_ddmendpoints.agis.ALL.json
[2025-12-12 15:30:11] -rw------- 1 boinc boinc   1535563 Dec 12 15:18 log.47866687._000323.job.log.tgz.1
[2025-12-12 15:30:11] -rw------- 1 boinc boinc     27892 Dec 12 15:19 heartbeat.json
[2025-12-12 15:30:11] -rw------- 1 boinc boinc        97 Dec 12 15:19 pilot_heartbeat.json
[2025-12-12 15:30:11] -rw------- 1 boinc boinc      4905 Dec 12 15:19 pilotlog.txt
[2025-12-12 15:30:11] -rw------- 1 boinc boinc   5637962 Dec 12 15:19 log.47866687._000323.job.log.1
[2025-12-12 15:30:11] -rw------- 1 boinc boinc       353 Dec 12 15:19 output.list
[2025-12-12 15:30:11] -rw-r--r-- 1 boinc boinc       620 Dec 12 15:19 runtime_log
[2025-12-12 15:30:11] -rw------- 1 boinc boinc   7208960 Dec 12 15:19 result.tar.gz
[2025-12-12 15:30:11] -rw------- 1 boinc boinc       794 Dec 12 15:19 v8wKDmoFtn8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7ANKDmkvgnLn.diag
[2025-12-12 15:30:11] -rw-r--r-- 1 boinc boinc      9283 Dec 12 15:19 runtime_log.err
[2025-12-12 15:30:11] -rw-r--r-- 1 boinc boinc        27 Dec 12 15:30 wrapper_checkpoint.txt
[2025-12-12 15:30:11] -rw-r--r-- 1 boinc boinc      8192 Dec 12 15:30 boinc_mmap_file
[2025-12-12 15:30:11] -rw-r--r-- 1 boinc boinc     22853 Dec 12 15:30 stderr.txt
[2025-12-12 15:30:11] HITS file was successfully produced:
[2025-12-12 15:30:11] -rw------- 1 boinc boinc 606634489 Dec 12 15:18 shared/HITS.pool.root.1
[2025-12-12 15:30:11]  *** Contents of shared directory: ***
[2025-12-12 15:30:11] total 920704
[2025-12-12 15:30:11] -rw-r--r-- 3 boinc boinc 328333826 Dec 11 23:34 ATLAS.root_0
[2025-12-12 15:30:11] -rw-r--r-- 2 boinc boinc     15847 Dec 11 23:34 start_atlas.sh
[2025-12-12 15:30:11] -rw-r--r-- 2 boinc boinc    592585 Dec 11 23:34 input.tar.gz
[2025-12-12 15:30:11] -rw------- 1 boinc boinc 606634489 Dec 12 15:18 HITS.pool.root.1
[2025-12-12 15:30:11] -rw------- 1 boinc boinc   7208960 Dec 12 15:19 result.tar.gz
15:30:13 (2334131): run_atlas exited; CPU time 159838.437295
15:30:13 (2334131): called boinc_finish(0)

</stderr_txt>
]]>

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