Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:26:33 (222144): wrapper (7.7.26015): starting
05:26:33 (222144): wrapper: running run_atlas (--nthreads 12)
[2025-12-11 05:26:33] Arguments: --nthreads 12
[2025-12-11 05:26:33] Threads: 12
[2025-12-11 05:26:33] Checking for CVMFS
[2025-12-11 05:26:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-11 05:26:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-11 05:26:35] Running cvmfs_config stat atlas.cern.ch
[2025-12-11 05:26:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-11 05:26:36] 2.13.3.0 9890 51394 352172 153877 1 514 16999400 32935937 24886 16776704 0 269066826 99.734 178915074 33613 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-11 05:26:36] CVMFS is ok
[2025-12-11 05:26:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-11 05:26:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-11 05:26:36] Further information can be found at the LHC@home message board.
[2025-12-11 05:26:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-11 05:26:36] Checking for apptainer binary...
[2025-12-11 05:26:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-11 05:26:36] Running /usr/bin/apptainer --version
[2025-12-11 05:26:38] apptainer version 1.4.4-1.el9
[2025-12-11 05:26:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-11 05:26:39] c-8-36.aglt2.org
[2025-12-11 05:26:39] apptainer works
[2025-12-11 05:26:39] Set ATHENA_PROC_NUMBER=12
[2025-12-11 05:26:39] Set ATHENA_CORE_NUMBER=12
[2025-12-11 05:26:39] Starting ATLAS job with PandaID=6926675702
[2025-12-11 05:26:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 02:04:30]  *** The last 200 lines of the pilot log: ***
[2025-12-13 02:04:30] 2025-12-13 07:03:22,374 | INFO     | monitor loop #7515: job 0:6926675702 is in state 'finished'
[2025-12-13 02:04:30] 2025-12-13 07:03:22,374 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 02:04:30] 2025-12-13 07:03:23,766 | INFO     | time since job start (160550s) is within the limit (174528.0s)
[2025-12-13 02:04:30] 2025-12-13 07:03:24,929 | INFO     | monitor loop #7516: job 0:6926675702 is in state 'finished'
[2025-12-13 02:04:30] 2025-12-13 07:03:24,933 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 02:04:30] 2025-12-13 07:03:25,773 | INFO     | time since job start (160552s) is within the limit (174528.0s)
[2025-12-13 02:04:30] 2025-12-13 07:03:27,469 | INFO     | monitor loop #7517: job 0:6926675702 is in state 'finished'
[2025-12-13 02:04:30] 2025-12-13 07:03:27,469 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 02:04:30] 2025-12-13 07:03:27,781 | INFO     | time since job start (160554s) is within the limit (174528.0s)
[2025-12-13 02:04:30] 2025-12-13 07:03:29,802 | INFO     | time since job start (160556s) is within the limit (174528.0s)
[2025-12-13 02:04:30] 2025-12-13 07:03:29,975 | INFO     | monitor loop #7518: job 0:6926675702 is in state 'finished'
[2025-12-13 02:04:30] 2025-12-13 07:03:29,975 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 02:04:30] 2025-12-13 07:03:31,369 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-13 02:04:30] 2025-12-13 07:03:31,400 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1889500000007
[2025-12-13 02:04:30] 2025-12-13 07:03:31,449 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6926675702/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 02:04:30] 2025-12-13 07:03:31,450 | INFO     | extracted standard info from prmon json
[2025-12-13 02:04:30] 2025-12-13 07:03:31,450 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 02:04:30] 2025-12-13 07:03:31,450 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 02:04:30] 2025-12-13 07:03:31,629 | INFO     | fitting pss+swap vs Time
[2025-12-13 02:04:30] 2025-12-13 07:03:31,633 | INFO     | sum of square deviations: 5634740559880.755
[2025-12-13 02:04:30] 2025-12-13 07:03:31,841 | INFO     | time since job start (160558s) is within the limit (174528.0s)
[2025-12-13 02:04:30] 2025-12-13 07:03:31,849 | INFO     | sum of deviations: 11507017848577.322
[2025-12-13 02:04:30] 2025-12-13 07:03:31,850 | INFO     | mean x: 1765529164.2453403
[2025-12-13 02:04:30] 2025-12-13 07:03:31,850 | INFO     | mean y: 4029829.4785089386
[2025-12-13 02:04:30] 2025-12-13 07:03:31,850 | INFO     | intersect: -3601455709.6081157
[2025-12-13 02:04:30] 2025-12-13 07:03:31,853 | INFO     | chi2: 38.32088584677533
[2025-12-13 02:04:30] 2025-12-13 07:03:31,857 | INFO     | sum of square deviations: 5602659702527.77
[2025-12-13 02:04:30] 2025-12-13 07:03:32,513 | INFO     | monitor loop #7519: job 0:6926675702 is in state 'finished'
[2025-12-13 02:04:30] 2025-12-13 07:03:32,513 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 02:04:30] 2025-12-13 07:03:33,043 | INFO     | sum of deviations: 13022390207414.49
[2025-12-13 02:04:30] 2025-12-13 07:03:33,043 | INFO     | mean x: 1765529011.7591465
[2025-12-13 02:04:30] 2025-12-13 07:03:33,043 | INFO     | mean y: 4037032.3029725607
[2025-12-13 02:04:30] 2025-12-13 07:03:33,043 | INFO     | intersect: -4099622467.7136683
[2025-12-13 02:04:30] 2025-12-13 07:03:33,047 | INFO     | chi2: 33.51886844036105
[2025-12-13 02:04:30] 2025-12-13 07:03:33,047 | INFO     | current chi2=33.51886844036105 (change=12.531070982061788 %)
[2025-12-13 02:04:30] 2025-12-13 07:03:33,047 | INFO     | right removable region: 2623
[2025-12-13 02:04:30] 2025-12-13 07:03:33,051 | INFO     | sum of square deviations: 5602648083247.787
[2025-12-13 02:04:30] 2025-12-13 07:03:33,281 | INFO     | sum of deviations: 10072390986385.012
[2025-12-13 02:04:30] 2025-12-13 07:03:33,282 | INFO     | mean x: 1765529316.7591465
[2025-12-13 02:04:30] 2025-12-13 07:03:33,282 | INFO     | mean y: 4036646.7911585364
[2025-12-13 02:04:30] 2025-12-13 07:03:33,282 | INFO     | intersect: -3170016285.3385115
[2025-12-13 02:04:30] 2025-12-13 07:03:33,285 | INFO     | chi2: 34.52494627548263
[2025-12-13 02:04:30] 2025-12-13 07:03:33,286 | INFO     | current chi2=34.52494627548263 (change=9.905667594613112 %)
[2025-12-13 02:04:30] 2025-12-13 07:03:33,286 | INFO     | left removable region: 10
[2025-12-13 02:04:30] 2025-12-13 07:03:33,289 | INFO     | sum of square deviations: 5532487862115.7
[2025-12-13 02:04:30] 2025-12-13 07:03:33,654 | INFO     | sum of deviations: 10865526933871.336
[2025-12-13 02:04:30] 2025-12-13 07:03:33,655 | INFO     | mean x: 1765529286.2897053
[2025-12-13 02:04:30] 2025-12-13 07:03:33,655 | INFO     | mean y: 4050269.888633754
[2025-12-13 02:04:30] 2025-12-13 07:03:33,655 | INFO     | intersect: -3463360141.27193
[2025-12-13 02:04:30] 2025-12-13 07:03:33,666 | INFO     | chi2: 26.833875620150557
[2025-12-13 02:04:30] 2025-12-13 07:03:33,667 | INFO     | current memory leak: 1.96 B/s (using 2613 data points, chi2=26.83)
[2025-12-13 02:04:30] 2025-12-13 07:03:33,669 | INFO     | could have reported an average CPU frequency of 2600 MHz (89 samples)
[2025-12-13 02:04:30] 2025-12-13 07:03:33,669 | INFO     | ..............................
[2025-12-13 02:04:30] 2025-12-13 07:03:33,669 | INFO     | . Timing measurements:
[2025-12-13 02:04:30] 2025-12-13 07:03:33,669 | INFO     | . get job = 0 s
[2025-12-13 02:04:30] 2025-12-13 07:03:33,669 | INFO     | . initial setup = 5 s
[2025-12-13 02:04:30] 2025-12-13 07:03:33,670 | INFO     | . payload setup = 56 s
[2025-12-13 02:04:30] 2025-12-13 07:03:33,670 | INFO     | . stage-in = 0 s
[2025-12-13 02:04:30] 2025-12-13 07:03:33,670 | INFO     | . payload execution = 160354 s
[2025-12-13 02:04:30] 2025-12-13 07:03:33,670 | INFO     | . stage-out = 20 s
[2025-12-13 02:04:30] 2025-12-13 07:03:33,670 | INFO     | . log creation = 4 s
[2025-12-13 02:04:30] 2025-12-13 07:03:33,670 | INFO     | ..............................
[2025-12-13 02:04:30] 2025-12-13 07:03:33,903 | INFO     | time since job start (160560s) is within the limit (174528.0s)
[2025-12-13 02:04:30] 2025-12-13 07:03:35,376 | INFO     | 
[2025-12-13 02:04:30] 2025-12-13 07:03:35,376 | INFO     | job summary report
[2025-12-13 02:04:30] 2025-12-13 07:03:35,376 | INFO     | --------------------------------------------------
[2025-12-13 02:04:30] 2025-12-13 07:03:35,376 | INFO     | PanDA job id: 6926675702
[2025-12-13 02:04:30] 2025-12-13 07:03:35,376 | INFO     | task id: 47866687
[2025-12-13 02:04:30] 2025-12-13 07:03:35,377 | INFO     | errors: (none)
[2025-12-13 02:04:30] 2025-12-13 07:03:35,377 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 02:04:30] 2025-12-13 07:03:35,377 | INFO     | pilot state: finished 
[2025-12-13 02:04:30] 2025-12-13 07:03:35,378 | INFO     | transexitcode: 0
[2025-12-13 02:04:30] 2025-12-13 07:03:35,378 | INFO     | exeerrorcode: 0
[2025-12-13 02:04:30] 2025-12-13 07:03:35,378 | INFO     | exeerrordiag: 
[2025-12-13 02:04:30] 2025-12-13 07:03:35,378 | INFO     | exitcode: 0
[2025-12-13 02:04:30] 2025-12-13 07:03:35,378 | INFO     | exitmsg: OK
[2025-12-13 02:04:30] 2025-12-13 07:03:35,378 | INFO     | cpuconsumptiontime: 202693 s
[2025-12-13 02:04:30] 2025-12-13 07:03:35,378 | INFO     | nevents: 1000
[2025-12-13 02:04:30] 2025-12-13 07:03:35,378 | INFO     | neventsw: 0
[2025-12-13 02:04:30] 2025-12-13 07:03:35,378 | INFO     | pid: 236652
[2025-12-13 02:04:30] 2025-12-13 07:03:35,379 | INFO     | pgrp: 236652
[2025-12-13 02:04:30] 2025-12-13 07:03:35,379 | INFO     | corecount: 12
[2025-12-13 02:04:30] 2025-12-13 07:03:35,379 | INFO     | event service: False
[2025-12-13 02:04:30] 2025-12-13 07:03:35,379 | INFO     | sizes: {0: 2283731, 1: 2284416, 2: 2284444, 3: 2284615, 14: 2284643, 26: 2284671, 28: 2285089, 36: 2285117, 160419: 2398767, 160422: 2398766, 160444: 2407816, 1604
[2025-12-13 02:04:30] 2025-12-13 07:03:35,379 | INFO     | --------------------------------------------------
[2025-12-13 02:04:30] 2025-12-13 07:03:35,379 | INFO     | 
[2025-12-13 02:04:30] 2025-12-13 07:03:35,379 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 02:04:30] 2025-12-13 07:03:35,515 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 02:04:30] 2025-12-13 07:03:35,515 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 02:04:30] 2025-12-13 07:03:35,515 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 02:04:30] 2025-12-13 07:03:35,515 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 02:04:30] 2025-12-13 07:03:35,516 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 02:04:30] 2025-12-13 07:03:35,516 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 02:04:30] 2025-12-13 07:03:35,516 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 02:04:30] 2025-12-13 07:03:35,516 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 02:04:30] 2025-12-13 07:03:35,516 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 02:04:30] 2025-12-13 07:03:35,516 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 02:04:30] 2025-12-13 07:03:35,516 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 02:04:30] 2025-12-13 07:03:35,516 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 02:04:30] 2025-12-13 07:03:35,517 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 02:04:30] 2025-12-13 07:03:35,517 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 02:04:30] 2025-12-13 07:03:35,517 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 02:04:30] 2025-12-13 07:03:35,517 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 02:04:30] 2025-12-13 07:03:35,517 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 02:04:30] 2025-12-13 07:03:35,517 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 02:04:30] 2025-12-13 07:03:35,517 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 02:04:30] 2025-12-13 07:03:35,517 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 02:04:30] 2025-12-13 07:03:35,538 | INFO     | job 6926675702 has completed (purged errors)
[2025-12-13 02:04:30] 2025-12-13 07:03:35,538 | INFO     | overall cleanup function is called
[2025-12-13 02:04:30] 2025-12-13 07:03:36,639 | INFO     | --- collectZombieJob: --- 10, [236652]
[2025-12-13 02:04:30] 2025-12-13 07:03:36,639 | INFO     | zombie collector waiting for pid 236652
[2025-12-13 02:04:30] 2025-12-13 07:03:36,639 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 02:04:30] 2025-12-13 07:03:36,639 | INFO     | collected zombie processes
[2025-12-13 02:04:30] 2025-12-13 07:03:36,639 | INFO     | will attempt to kill all subprocesses of pid=236652
[2025-12-13 02:04:30] 2025-12-13 07:03:39,940 | INFO     | PID=226707 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-13 02:04:30] 2025-12-13 07:03:39,940 | INFO     | .. there are 33 such processes running
[2025-12-13 02:04:30] 2025-12-13 07:03:40,011 | INFO     | process IDs to be killed: [236652] (in reverse order)
[2025-12-13 02:04:30] 2025-12-13 07:03:41,110 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 02:04:30] 2025-12-13 07:03:41,110 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 02:04:30] 2025-12-13 07:03:41,171 | INFO     | did not find any defunct processes belonging to 236652
[2025-12-13 02:04:30] 2025-12-13 07:03:41,202 | INFO     | did not find any defunct processes belonging to 236652
[2025-12-13 02:04:30] 2025-12-13 07:03:41,203 | INFO     | ready for new job
[2025-12-13 02:04:30] 2025-12-13 07:03:41,203 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 02:04:30] 2025-12-13 07:03:41,218 | INFO     | ***************************************
[2025-12-13 02:04:30] 2025-12-13 07:03:41,219 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 02:04:30] 2025-12-13 07:03:41,219 | INFO     | ***************************************
[2025-12-13 02:04:30] 2025-12-13 07:03:41,219 | INFO     | 
[2025-12-13 02:04:30] 2025-12-13 07:03:41,225 | INFO     | architecture information:
[2025-12-13 02:04:30] 2025-12-13 07:03:41,225 | INFO     | executing command: cat /etc/os-release
[2025-12-13 02:04:30] 2025-12-13 07:03:41,395 | INFO     | cat /etc/os-release:
[2025-12-13 02:04:30] NAME="CentOS Linux"
[2025-12-13 02:04:30] VERSION="7 (Core)"
[2025-12-13 02:04:30] ID="centos"
[2025-12-13 02:04:30] ID_LIKE="rhel fedora"
[2025-12-13 02:04:30] VERSION_ID="7"
[2025-12-13 02:04:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 02:04:30] ANSI_COLOR="0;31"
[2025-12-13 02:04:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 02:04:30] HOME_URL="https://www.centos.org/"
[2025-12-13 02:04:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 02:04:30] 
[2025-12-13 02:04:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 02:04:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 02:04:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 02:04:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 02:04:30] 
[2025-12-13 02:04:30] 2025-12-13 07:03:41,395 | INFO     | ***************************************
[2025-12-13 02:04:30] 2025-12-13 07:03:41,899 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 02:04:30] 2025-12-13 07:03:42,146 | INFO     | sufficient remaining disk space (73816604672 B)
[2025-12-13 02:04:30] 2025-12-13 07:03:42,147 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 02:04:30] 2025-12-13 07:03:42,147 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 02:04:30] 2025-12-13 07:03:42,147 | INFO     | update_server=False
[2025-12-13 02:04:30] 2025-12-13 07:03:42,147 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 02:04:30] 2025-12-13 07:03:42,147 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 02:04:30] 2025-12-13 07:03:42,148 | INFO     | aborting loop
[2025-12-13 02:04:30] 2025-12-13 07:03:42,206 | INFO     | all job control threads have been joined
[2025-12-13 02:04:30] 2025-12-13 07:03:42,245 | INFO     | all data control threads have been joined
[2025-12-13 02:04:30] 2025-12-13 07:03:42,656 | INFO     | all payload control threads have been joined
[2025-12-13 02:04:30] 2025-12-13 07:03:43,153 | INFO     | [job] retrieve thread has finished
[2025-12-13 02:04:30] 2025-12-13 07:03:43,163 | INFO     | [job] job monitor thread has finished
[2025-12-13 02:04:30] 2025-12-13 07:03:43,220 | INFO     | [job] control thread has finished
[2025-12-13 02:04:30] 2025-12-13 07:03:43,273 | INFO     | [data] control thread has finished
[2025-12-13 02:04:30] 2025-12-13 07:03:43,314 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 02:04:30] 2025-12-13 07:03:43,453 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 02:04:30] 2025-12-13 07:03:43,509 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 02:04:30] 2025-12-13 07:03:43,700 | INFO     | [payload] control thread has finished
[2025-12-13 02:04:30] 2025-12-13 07:03:43,896 | INFO     | [payload] failed_post thread has finished
[2025-12-13 02:04:30] 2025-12-13 07:03:43,953 | INFO     | [data] copytool_in thread has finished
[2025-12-13 02:04:30] 2025-12-13 07:03:43,961 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 02:04:30] 2025-12-13 07:03:44,198 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 02:04:30] 2025-12-13 07:03:44,230 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 02:04:30] 2025-12-13 07:03:44,243 | INFO     | [job] validate thread has finished
[2025-12-13 02:04:30] 2025-12-13 07:03:44,304 | INFO     | [payload] validate_post thread has finished
[2025-12-13 02:04:30] 2025-12-13 07:03:44,526 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 02:04:30] 2025-12-13 07:03:45,528 | INFO     | [data] copytool_out thread has finished
[2025-12-13 02:04:30] 2025-12-13 07:03:45,532 | INFO     | [job] queue monitor thread has finished
[2025-12-13 02:04:30] 2025-12-13 07:03:47,345 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 02:04:30] 2025-12-13 07:03:55,641 | INFO     | [monitor] cgroup control has ended
[2025-12-13 02:04:30] 2025-12-13 07:03:55,641 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139958413440832)>', '<ExcThread(monitor, started 139958069221120)>']
[2025-12-13 02:04:30] 2025-12-13 07:04:00,668 | INFO     | all workflow threads have been joined
[2025-12-13 02:04:30] 2025-12-13 07:04:00,668 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 02:04:30] 2025-12-13 07:04:00,668 | INFO     | traces error code: 0
[2025-12-13 02:04:30] 2025-12-13 07:04:00,669 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 02:04:30] 2025-12-13 07:04:26,056 | INFO     | PID=226707 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-13 02:04:30] 2025-12-13 07:04:26,080 | INFO     | .. there are 33 such processes running
[2025-12-13 02:04:30] 2025-12-13 07:04:26,090 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 02:04:30] 2025-12-13 07:04:26,091 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 02:04:30] 2025-12-13 07:04:26,091 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 02:04:30] 2025-12-13 07:04:26,091 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 02:04:30] 2025-12-13 07:04:26,091 | INFO     | [monitor] control thread has ended
[2025-12-13 02:04:30] 2025-12-13 07:04:27,833 [wrapper] ==== pilot stdout END ====
[2025-12-13 02:04:30] 2025-12-13 07:04:27,896 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 02:04:30] 2025-12-13 07:04:27,950 [wrapper] pilotpid: 226707
[2025-12-13 02:04:30] 2025-12-13 07:04:27,994 [wrapper] Pilot exit status: 0
[2025-12-13 02:04:30] 2025-12-13 07:04:28,239 [wrapper] pandaids: 6926675702
[2025-12-13 02:04:30] 2025-12-13 07:04:28,419 [wrapper] cleanup supervisor_pilot 3929291 226708
[2025-12-13 02:04:30] 2025-12-13 07:04:28,424 [wrapper] Test setup, not cleaning
[2025-12-13 02:04:30] 2025-12-13 07:04:28,427 [wrapper] apfmon messages muted
[2025-12-13 02:04:30] 2025-12-13 07:04:28,430 [wrapper] ==== wrapper stdout END ====
[2025-12-13 02:04:30] 2025-12-13 07:04:28,433 [wrapper] ==== wrapper stderr END ====
[2025-12-13 02:04:30]  *** Error codes and diagnostics ***
[2025-12-13 02:04:30]     "exeErrorCode": 0,
[2025-12-13 02:04:30]     "exeErrorDiag": "",
[2025-12-13 02:04:30]     "pilotErrorCode": 0,
[2025-12-13 02:04:30]     "pilotErrorDiag": "",
[2025-12-13 02:04:30]  *** Listing of results directory ***
[2025-12-13 02:04:30] total 953948
[2025-12-13 02:04:30] -rw-r--r--. 1 boincer umatlas      5112 Dec 11 05:23 queuedata.json
[2025-12-13 02:04:30] -rwx------. 1 boincer umatlas     36292 Dec 11 05:23 runpilot2-wrapper.sh
[2025-12-13 02:04:30] -rw-r--r--. 1 boincer umatlas    579449 Dec 11 05:23 pilot3.tar.gz
[2025-12-13 02:04:30] -rw-r--r--. 1 boincer umatlas       100 Dec 11 05:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 02:04:30] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 11 05:26 run_atlas
[2025-12-13 02:04:30] -rw-r--r--. 1 boincer umatlas       105 Dec 11 05:26 job.xml
[2025-12-13 02:04:30] -rw-r--r--. 2 boincer umatlas 326952750 Dec 11 05:26 EVNT.47866683._000013.pool.root.1
[2025-12-13 02:04:30] -rw-r--r--. 2 boincer umatlas     15847 Dec 11 05:26 start_atlas.sh
[2025-12-13 02:04:30] drwxrwx--x. 2 boincer umatlas      4096 Dec 11 05:26 shared
[2025-12-13 02:04:30] -rw-r--r--. 2 boincer umatlas    592573 Dec 11 05:26 input.tar.gz
[2025-12-13 02:04:30] -rw-r--r--. 1 boincer umatlas         0 Dec 11 05:26 boinc_lockfile
[2025-12-13 02:04:30] -rw-r--r--. 1 boincer umatlas      2847 Dec 11 05:26 pandaJob.out
[2025-12-13 02:04:30] -rw-------. 1 boincer umatlas        57 Dec 11 05:26 setup.sh.local
[2025-12-13 02:04:30] -rw-------. 1 boincer umatlas    991379 Dec 11 05:27 agis_schedconf.cvmfs.json
[2025-12-13 02:04:30] drwx------. 5 boincer umatlas      4096 Dec 11 05:27 pilot3
[2025-12-13 02:04:30] -rw-r--r--. 1 boincer umatlas       534 Dec 13 00:41 boinc_task_state.xml
[2025-12-13 02:04:30] -rw-------. 1 boincer umatlas 603959492 Dec 13 01:56 HITS.47866687._000122.pool.root.1
[2025-12-13 02:04:30] -rw-r--r--. 1 boincer umatlas      6661 Dec 13 02:01 init_data.xml
[2025-12-13 02:04:30] -rw-------. 1 boincer umatlas      1079 Dec 13 02:02 memory_monitor_summary.json
[2025-12-13 02:04:30] -rw-------. 1 boincer umatlas   1516240 Dec 13 02:02 agis_ddmendpoints.agis.ALL.json
[2025-12-13 02:04:30] -rw-------. 1 boincer umatlas   3632021 Dec 13 02:02 log.47866687._000122.job.log.tgz.1
[2025-12-13 02:04:30] -rw-------. 1 boincer umatlas     28017 Dec 13 02:03 heartbeat.json
[2025-12-13 02:04:30] -rw-------. 1 boincer umatlas        95 Dec 13 02:04 pilot_heartbeat.json
[2025-12-13 02:04:30] -rw-------. 1 boincer umatlas       822 Dec 13 02:04 pilotlog.txt
[2025-12-13 02:04:30] -rw-r--r--. 1 boincer umatlas      8192 Dec 13 02:04 boinc_mmap_file
[2025-12-13 02:04:30] -rw-r--r--. 1 boincer umatlas        30 Dec 13 02:04 wrapper_checkpoint.txt
[2025-12-13 02:04:30] -rw-------. 1 boincer umatlas  17350765 Dec 13 02:04 log.47866687._000122.job.log.1
[2025-12-13 02:04:30] -rw-------. 1 boincer umatlas       353 Dec 13 02:04 output.list
[2025-12-13 02:04:30] -rw-r--r--. 1 boincer umatlas       620 Dec 13 02:04 runtime_log
[2025-12-13 02:04:30] -rw-------. 1 boincer umatlas  21022720 Dec 13 02:04 result.tar.gz
[2025-12-13 02:04:30] -rw-r--r--. 1 boincer umatlas      9336 Dec 13 02:04 runtime_log.err
[2025-12-13 02:04:30] -rw-------. 1 boincer umatlas       667 Dec 13 02:04 FdbLDmt0sn8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm78MKDmOBWIPo.diag
[2025-12-13 02:04:30] -rw-r--r--. 1 boincer umatlas     21733 Dec 13 02:04 stderr.txt
[2025-12-13 02:04:30] HITS file was successfully produced:
[2025-12-13 02:04:30] -rw-------. 1 boincer umatlas 603959492 Dec 13 01:56 shared/HITS.pool.root.1
[2025-12-13 02:04:30]  *** Contents of shared directory: ***
[2025-12-13 02:04:30] total 930236
[2025-12-13 02:04:30] -rw-r--r--. 2 boincer umatlas 326952750 Dec 11 05:26 ATLAS.root_0
[2025-12-13 02:04:30] -rw-r--r--. 2 boincer umatlas     15847 Dec 11 05:26 start_atlas.sh
[2025-12-13 02:04:30] -rw-r--r--. 2 boincer umatlas    592573 Dec 11 05:26 input.tar.gz
[2025-12-13 02:04:30] -rw-------. 1 boincer umatlas 603959492 Dec 13 01:56 HITS.pool.root.1
[2025-12-13 02:04:30] -rw-------. 1 boincer umatlas  21022720 Dec 13 02:04 result.tar.gz
02:04:32 (222144): run_atlas exited; CPU time 206159.513358
02:04:32 (222144): called boinc_finish(0)

</stderr_txt>
]]>

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