Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:28:54 (15951): wrapper (7.7.26015): starting
05:28:54 (15951): wrapper: running run_atlas (--nthreads 8)
[2025-12-11 05:28:54] Arguments: --nthreads 8
[2025-12-11 05:28:54] Threads: 8
[2025-12-11 05:28:54] Checking for CVMFS
[2025-12-11 05:28:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-11 05:28:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-11 05:28:55] Running cvmfs_config stat atlas.cern.ch
[2025-12-11 05:28:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-11 05:28:55] 2.11.2.0 2895 94780 92660 153877 0 1 11856509 20275200 1 130560 0 27674654 99.846 6473748 33136 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-11 05:28:55] CVMFS is ok
[2025-12-11 05:28:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-11 05:28:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-11 05:28:55] Further information can be found at the LHC@home message board.
[2025-12-11 05:28:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-11 05:28:55] Checking for apptainer binary...
[2025-12-11 05:28:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-11 05:28:55] Running /usr/bin/apptainer --version
[2025-12-11 05:28:55] apptainer version 1.3.2-1.el7
[2025-12-11 05:28:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-11 05:28:57] c-204-7.aglt2.org
[2025-12-11 05:28:57] apptainer works
[2025-12-11 05:28:57] Set ATHENA_PROC_NUMBER=8
[2025-12-11 05:28:57] Set ATHENA_CORE_NUMBER=8
[2025-12-11 05:28:57] Starting ATLAS job with PandaID=6926675251
[2025-12-11 05:28:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:31:16 (17966): wrapper (7.7.26015): starting
07:31:16 (17966): wrapper: running run_atlas (--nthreads 8)
[2025-12-11 07:31:16] Arguments: --nthreads 8
[2025-12-11 07:31:16] Threads: 8
[2025-12-11 07:31:16] This job has been restarted, cleaning up previous attempt
[2025-12-11 07:31:16] Checking for CVMFS
[2025-12-11 07:31:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-11 07:31:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-11 07:31:17] Running cvmfs_config stat atlas.cern.ch
[2025-12-11 07:31:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-11 07:31:17] 2.11.2.0 2895 94902 93036 153886 2 57 12013650 20275201 1 130560 0 27764349 99.846 6487182 33141 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-11 07:31:17] CVMFS is ok
[2025-12-11 07:31:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-11 07:31:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-11 07:31:17] Further information can be found at the LHC@home message board.
[2025-12-11 07:31:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-11 07:31:17] Checking for apptainer binary...
[2025-12-11 07:31:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-11 07:31:17] Running /usr/bin/apptainer --version
[2025-12-11 07:31:17] apptainer version 1.3.2-1.el7
[2025-12-11 07:31:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-11 07:31:19] c-204-7.aglt2.org
[2025-12-11 07:31:19] apptainer works
[2025-12-11 07:31:19] Set ATHENA_PROC_NUMBER=8
[2025-12-11 07:31:19] Set ATHENA_CORE_NUMBER=8
[2025-12-11 07:31:19] Starting ATLAS job with PandaID=6926675251
[2025-12-11 07:31:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-11 15:58:32]  *** The last 200 lines of the pilot log: ***
[2025-12-11 15:58:32] 2025-12-11 20:57:29,788 | INFO     | time since job start (30352s) is within the limit (174528.0s)
[2025-12-11 15:58:32] 2025-12-11 20:57:31,793 | INFO     | time since job start (30354s) is within the limit (174528.0s)
[2025-12-11 15:58:32] 2025-12-11 20:57:31,896 | INFO     | monitor loop #2242: job 0:6926675251 is in state 'finished'
[2025-12-11 15:58:32] 2025-12-11 20:57:31,897 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-11 15:58:32] 2025-12-11 20:57:33,475 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-11 15:58:32] 2025-12-11 20:57:33,480 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1596.0
[2025-12-11 15:58:32] 2025-12-11 20:57:33,482 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6926675251/memory_monitor_summary.json (trf name=prmon)
[2025-12-11 15:58:32] 2025-12-11 20:57:33,483 | INFO     | extracted standard info from prmon json
[2025-12-11 15:58:32] 2025-12-11 20:57:33,483 | INFO     | extracted standard memory fields from prmon json
[2025-12-11 15:58:32] 2025-12-11 20:57:33,484 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-11 15:58:32] 2025-12-11 20:57:33,497 | INFO     | fitting pss+swap vs Time
[2025-12-11 15:58:32] 2025-12-11 20:57:33,498 | INFO     | sum of square deviations: 38067021697.766
[2025-12-11 15:58:32] 2025-12-11 20:57:33,506 | INFO     | sum of deviations: 395357417901.2387
[2025-12-11 15:58:32] 2025-12-11 20:57:33,506 | INFO     | mean x: 1765471464.531187
[2025-12-11 15:58:32] 2025-12-11 20:57:33,506 | INFO     | mean y: 3278329.6619718308
[2025-12-11 15:58:32] 2025-12-11 20:57:33,507 | INFO     | intersect: -18332598985.277294
[2025-12-11 15:58:32] 2025-12-11 20:57:33,507 | INFO     | chi2: 6.508156634972106
[2025-12-11 15:58:32] 2025-12-11 20:57:33,508 | INFO     | sum of square deviations: 36929722751.34145
[2025-12-11 15:58:32] 2025-12-11 20:57:33,516 | INFO     | sum of deviations: 580896100009.463
[2025-12-11 15:58:32] 2025-12-11 20:57:33,516 | INFO     | mean x: 1765471312.0365853
[2025-12-11 15:58:32] 2025-12-11 20:57:33,516 | INFO     | mean y: 3303193.7520325202
[2025-12-11 15:58:32] 2025-12-11 20:57:33,517 | INFO     | intersect: -27767157113.951992
[2025-12-11 15:58:32] 2025-12-11 20:57:33,517 | INFO     | chi2: 3.394376446170297
[2025-12-11 15:58:32] 2025-12-11 20:57:33,518 | INFO     | current chi2=3.394376446170297 (change=47.844272402259946 %)
[2025-12-11 15:58:32] 2025-12-11 20:57:33,518 | INFO     | sum of square deviations: 35815278064.96953
[2025-12-11 15:58:32] 2025-12-11 20:57:33,525 | INFO     | sum of deviations: 586901452255.5304
[2025-12-11 15:58:32] 2025-12-11 20:57:33,525 | INFO     | mean x: 1765471159.540041
[2025-12-11 15:58:32] 2025-12-11 20:57:33,526 | INFO     | mean y: 3303997.5112936343
[2025-12-11 15:58:32] 2025-12-11 20:57:33,526 | INFO     | intersect: -28927298902.449375
[2025-12-11 15:58:32] 2025-12-11 20:57:33,527 | INFO     | chi2: 3.305561452780463
[2025-12-11 15:58:32] 2025-12-11 20:57:33,527 | INFO     | current chi2=3.305561452780463 (change=2.6165333986464456 %)
[2025-12-11 15:58:32] 2025-12-11 20:57:33,527 | INFO     | right removable region: 486
[2025-12-11 15:58:32] 2025-12-11 20:57:33,528 | INFO     | sum of square deviations: 36929561711.341446
[2025-12-11 15:58:32] 2025-12-11 20:57:33,535 | INFO     | sum of deviations: 204993628680.42657
[2025-12-11 15:58:32] 2025-12-11 20:57:33,535 | INFO     | mean x: 1765471617.0365853
[2025-12-11 15:58:32] 2025-12-11 20:57:33,535 | INFO     | mean y: 3303825.2540650405
[2025-12-11 15:58:32] 2025-12-11 20:57:33,535 | INFO     | intersect: -9796715897.08896
[2025-12-11 15:58:32] 2025-12-11 20:57:33,536 | INFO     | chi2: 3.502797941267316
[2025-12-11 15:58:32] 2025-12-11 20:57:33,536 | INFO     | current chi2=3.502797941267316 (change=46.17833992432284 %)
[2025-12-11 15:58:32] 2025-12-11 20:57:33,537 | INFO     | sum of square deviations: 35814985874.88708
[2025-12-11 15:58:32] 2025-12-11 20:57:33,544 | INFO     | sum of deviations: 159839392716.34668
[2025-12-11 15:58:32] 2025-12-11 20:57:33,544 | INFO     | mean x: 1765471769.5420945
[2025-12-11 15:58:32] 2025-12-11 20:57:33,544 | INFO     | mean y: 3309983.934291581
[2025-12-11 15:58:32] 2025-12-11 20:57:33,544 | INFO     | intersect: -7875848100.54037
[2025-12-11 15:58:32] 2025-12-11 20:57:33,545 | INFO     | chi2: 3.298499040454586
[2025-12-11 15:58:32] 2025-12-11 20:57:33,545 | INFO     | current chi2=3.298499040454586 (change=5.832448923354519 %)
[2025-12-11 15:58:32] 2025-12-11 20:57:33,545 | INFO     | left removable region: 20
[2025-12-11 15:58:32] 2025-12-11 20:57:33,546 | INFO     | sum of square deviations: 31378971898.96153
[2025-12-11 15:58:32] 2025-12-11 20:57:33,552 | INFO     | sum of deviations: 322446615797.45105
[2025-12-11 15:58:32] 2025-12-11 20:57:33,552 | INFO     | mean x: 1765471739.0472102
[2025-12-11 15:58:32] 2025-12-11 20:57:33,552 | INFO     | mean y: 3340724.615879828
[2025-12-11 15:58:32] 2025-12-11 20:57:33,553 | INFO     | intersect: -18138438724.84573
[2025-12-11 15:58:32] 2025-12-11 20:57:33,553 | INFO     | chi2: 0.029386499104859114
[2025-12-11 15:58:32] 2025-12-11 20:57:33,553 | INFO     | current memory leak: 10.28 B/s (using 466 data points, chi2=0.03)
[2025-12-11 15:58:32] 2025-12-11 20:57:33,554 | INFO     | could have reported an average CPU frequency of 2142 MHz (20 samples)
[2025-12-11 15:58:32] 2025-12-11 20:57:33,554 | INFO     | ..............................
[2025-12-11 15:58:32] 2025-12-11 20:57:33,554 | INFO     | . Timing measurements:
[2025-12-11 15:58:32] 2025-12-11 20:57:33,555 | INFO     | . get job = 0 s
[2025-12-11 15:58:32] 2025-12-11 20:57:33,555 | INFO     | . initial setup = 1 s
[2025-12-11 15:58:32] 2025-12-11 20:57:33,555 | INFO     | . payload setup = 15 s
[2025-12-11 15:58:32] 2025-12-11 20:57:33,555 | INFO     | . stage-in = 0 s
[2025-12-11 15:58:32] 2025-12-11 20:57:33,555 | INFO     | . payload execution = 30306 s
[2025-12-11 15:58:32] 2025-12-11 20:57:33,555 | INFO     | . stage-out = 3 s
[2025-12-11 15:58:32] 2025-12-11 20:57:33,555 | INFO     | . log creation = 0 s
[2025-12-11 15:58:32] 2025-12-11 20:57:33,556 | INFO     | ..............................
[2025-12-11 15:58:32] 2025-12-11 20:57:33,652 | INFO     | 
[2025-12-11 15:58:32] 2025-12-11 20:57:33,653 | INFO     | job summary report
[2025-12-11 15:58:32] 2025-12-11 20:57:33,653 | INFO     | --------------------------------------------------
[2025-12-11 15:58:32] 2025-12-11 20:57:33,653 | INFO     | PanDA job id: 6926675251
[2025-12-11 15:58:32] 2025-12-11 20:57:33,653 | INFO     | task id: 47866687
[2025-12-11 15:58:32] 2025-12-11 20:57:33,653 | INFO     | errors: (none)
[2025-12-11 15:58:32] 2025-12-11 20:57:33,653 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-11 15:58:32] 2025-12-11 20:57:33,654 | INFO     | pilot state: finished 
[2025-12-11 15:58:32] 2025-12-11 20:57:33,654 | INFO     | transexitcode: 0
[2025-12-11 15:58:32] 2025-12-11 20:57:33,654 | INFO     | exeerrorcode: 0
[2025-12-11 15:58:32] 2025-12-11 20:57:33,654 | INFO     | exeerrordiag: 
[2025-12-11 15:58:32] 2025-12-11 20:57:33,654 | INFO     | exitcode: 0
[2025-12-11 15:58:32] 2025-12-11 20:57:33,654 | INFO     | exitmsg: OK
[2025-12-11 15:58:32] 2025-12-11 20:57:33,654 | INFO     | cpuconsumptiontime: 233353 s
[2025-12-11 15:58:32] 2025-12-11 20:57:33,654 | INFO     | nevents: 1000
[2025-12-11 15:58:32] 2025-12-11 20:57:33,655 | INFO     | neventsw: 0
[2025-12-11 15:58:32] 2025-12-11 20:57:33,655 | INFO     | pid: 29179
[2025-12-11 15:58:32] 2025-12-11 20:57:33,655 | INFO     | pgrp: 29179
[2025-12-11 15:58:32] 2025-12-11 20:57:33,655 | INFO     | corecount: 8
[2025-12-11 15:58:32] 2025-12-11 20:57:33,655 | INFO     | event service: False
[2025-12-11 15:58:32] 2025-12-11 20:57:33,655 | INFO     | sizes: {0: 2284555, 6: 2284817, 11: 2284845, 30326: 2343061, 30329: 2352055, 30330: 2352111, 30339: 2352485}
[2025-12-11 15:58:32] 2025-12-11 20:57:33,655 | INFO     | --------------------------------------------------
[2025-12-11 15:58:32] 2025-12-11 20:57:33,655 | INFO     | 
[2025-12-11 15:58:32] 2025-12-11 20:57:33,656 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-11 15:58:32] 2025-12-11 20:57:33,685 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-11 15:58:32] 2025-12-11 20:57:33,686 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-11 15:58:32] 2025-12-11 20:57:33,686 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-11 15:58:32] 2025-12-11 20:57:33,686 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-11 15:58:32] 2025-12-11 20:57:33,686 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-11 15:58:32] 2025-12-11 20:57:33,686 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-11 15:58:32] 2025-12-11 20:57:33,687 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-11 15:58:32] 2025-12-11 20:57:33,687 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-11 15:58:32] 2025-12-11 20:57:33,687 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-11 15:58:32] 2025-12-11 20:57:33,687 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-11 15:58:32] 2025-12-11 20:57:33,687 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-11 15:58:32] 2025-12-11 20:57:33,687 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-11 15:58:32] 2025-12-11 20:57:33,687 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-11 15:58:32] 2025-12-11 20:57:33,687 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-11 15:58:32] 2025-12-11 20:57:33,688 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-11 15:58:32] 2025-12-11 20:57:33,688 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-11 15:58:32] 2025-12-11 20:57:33,688 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-11 15:58:32] 2025-12-11 20:57:33,688 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-11 15:58:32] 2025-12-11 20:57:33,688 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-11 15:58:32] 2025-12-11 20:57:33,688 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-11 15:58:32] 2025-12-11 20:57:33,689 | INFO     | job 6926675251 has completed (purged errors)
[2025-12-11 15:58:32] 2025-12-11 20:57:33,689 | INFO     | overall cleanup function is called
[2025-12-11 15:58:32] 2025-12-11 20:57:34,704 | INFO     | --- collectZombieJob: --- 10, [29179]
[2025-12-11 15:58:32] 2025-12-11 20:57:34,704 | INFO     | zombie collector waiting for pid 29179
[2025-12-11 15:58:32] 2025-12-11 20:57:34,704 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-11 15:58:32] 2025-12-11 20:57:34,704 | INFO     | collected zombie processes
[2025-12-11 15:58:32] 2025-12-11 20:57:34,704 | INFO     | will attempt to kill all subprocesses of pid=29179
[2025-12-11 15:58:32] 2025-12-11 20:57:34,804 | INFO     | process IDs to be killed: [29179] (in reverse order)
[2025-12-11 15:58:32] 2025-12-11 20:57:34,871 | WARNING  | found no corresponding commands to process id(s)
[2025-12-11 15:58:32] 2025-12-11 20:57:34,871 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-11 15:58:32] 2025-12-11 20:57:34,874 | INFO     | did not find any defunct processes belonging to 29179
[2025-12-11 15:58:32] 2025-12-11 20:57:34,877 | INFO     | did not find any defunct processes belonging to 29179
[2025-12-11 15:58:32] 2025-12-11 20:57:34,878 | INFO     | ready for new job
[2025-12-11 15:58:32] 2025-12-11 20:57:34,878 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-11 15:58:32] 2025-12-11 20:57:34,882 | INFO     | ***************************************
[2025-12-11 15:58:32] 2025-12-11 20:57:34,882 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-11 15:58:32] 2025-12-11 20:57:34,882 | INFO     | ***************************************
[2025-12-11 15:58:32] 2025-12-11 20:57:34,882 | INFO     | 
[2025-12-11 15:58:32] 2025-12-11 20:57:34,883 | INFO     | architecture information:
[2025-12-11 15:58:32] 2025-12-11 20:57:34,884 | INFO     | executing command: cat /etc/os-release
[2025-12-11 15:58:32] 2025-12-11 20:57:34,900 | INFO     | cat /etc/os-release:
[2025-12-11 15:58:32] NAME="CentOS Linux"
[2025-12-11 15:58:32] VERSION="7 (Core)"
[2025-12-11 15:58:32] ID="centos"
[2025-12-11 15:58:32] ID_LIKE="rhel fedora"
[2025-12-11 15:58:32] VERSION_ID="7"
[2025-12-11 15:58:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-11 15:58:32] ANSI_COLOR="0;31"
[2025-12-11 15:58:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-11 15:58:32] HOME_URL="https://www.centos.org/"
[2025-12-11 15:58:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-11 15:58:32] 
[2025-12-11 15:58:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-11 15:58:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-11 15:58:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-11 15:58:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-11 15:58:32] 
[2025-12-11 15:58:32] 2025-12-11 20:57:34,900 | INFO     | ***************************************
[2025-12-11 15:58:32] 2025-12-11 20:57:35,403 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-11 15:58:32] 2025-12-11 20:57:35,421 | INFO     | sufficient remaining disk space (17954766848 B)
[2025-12-11 15:58:32] 2025-12-11 20:57:35,421 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-11 15:58:32] 2025-12-11 20:57:35,422 | INFO     | current server update state: UPDATING_FINAL
[2025-12-11 15:58:32] 2025-12-11 20:57:35,422 | INFO     | update_server=False
[2025-12-11 15:58:32] 2025-12-11 20:57:35,422 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-11 15:58:32] 2025-12-11 20:57:35,422 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-11 15:58:32] 2025-12-11 20:57:35,423 | INFO     | aborting loop
[2025-12-11 15:58:32] 2025-12-11 20:57:35,423 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-11 15:58:32] 2025-12-11 20:57:35,423 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-11 15:58:32] 2025-12-11 20:57:35,423 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-11 15:58:32] 2025-12-11 20:57:35,644 | INFO     | all data control threads have been joined
[2025-12-11 15:58:32] 2025-12-11 20:57:36,427 | INFO     | [job] retrieve thread has finished
[2025-12-11 15:58:32] 2025-12-11 20:57:36,429 | INFO     | [job] job monitor thread has finished
[2025-12-11 15:58:32] 2025-12-11 20:57:36,430 | INFO     | [job] queue monitor thread has finished
[2025-12-11 15:58:32] 2025-12-11 20:57:36,589 | INFO     | [payload] execute_payloads thread has finished
[2025-12-11 15:58:32] 2025-12-11 20:57:36,649 | INFO     | [data] control thread has finished
[2025-12-11 15:58:32] 2025-12-11 20:57:36,765 | INFO     | all payload control threads have been joined
[2025-12-11 15:58:32] 2025-12-11 20:57:36,953 | INFO     | [payload] failed_post thread has finished
[2025-12-11 15:58:32] 2025-12-11 20:57:36,998 | INFO     | all job control threads have been joined
[2025-12-11 15:58:32] 2025-12-11 20:57:37,245 | INFO     | [job] create_data_payload thread has finished
[2025-12-11 15:58:32] 2025-12-11 20:57:37,246 | INFO     | [payload] validate_pre thread has finished
[2025-12-11 15:58:32] 2025-12-11 20:57:37,423 | INFO     | [job] validate thread has finished
[2025-12-11 15:58:32] 2025-12-11 20:57:37,429 | INFO     | [data] copytool_out thread has finished
[2025-12-11 15:58:32] 2025-12-11 20:57:37,731 | INFO     | [data] copytool_in thread has finished
[2025-12-11 15:58:32] 2025-12-11 20:57:37,754 | INFO     | [payload] validate_post thread has finished
[2025-12-11 15:58:32] 2025-12-11 20:57:37,768 | INFO     | [payload] control thread has finished
[2025-12-11 15:58:32] 2025-12-11 20:57:38,004 | INFO     | [job] control thread has finished
[2025-12-11 15:58:32] 2025-12-11 20:57:39,430 | INFO     | [data] queue_monitor thread has finished
[2025-12-11 15:58:32] 2025-12-11 20:57:46,218 | INFO     | job.realtimelogging is not enabled
[2025-12-11 15:58:32] 2025-12-11 20:57:47,224 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-11 15:58:32] 2025-12-11 20:58:04,931 | INFO     | PID=22083 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-11 15:58:32] 2025-12-11 20:58:04,932 | INFO     | found 0 job(s) in 20 queues
[2025-12-11 15:58:32] 2025-12-11 20:58:04,932 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-11 15:58:32] 2025-12-11 20:58:04,933 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-11 15:58:32] 2025-12-11 20:58:27,184 | INFO     | [monitor] cgroup control has ended
[2025-12-11 15:58:32] 2025-12-11 20:58:27,345 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140189215815488)>', '<ExcThread(monitor, started 140188126799616)>']
[2025-12-11 15:58:32] 2025-12-11 20:58:28,046 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-11 15:58:32] 2025-12-11 20:58:28,046 | INFO     | [monitor] control thread has ended
[2025-12-11 15:58:32] 2025-12-11 20:58:32,371 | INFO     | all workflow threads have been joined
[2025-12-11 15:58:32] 2025-12-11 20:58:32,371 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-11 15:58:32] 2025-12-11 20:58:32,372 | INFO     | traces error code: 0
[2025-12-11 15:58:32] 2025-12-11 20:58:32,373 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-11 15:58:32] 2025-12-11 20:58:32,508 [wrapper] ==== pilot stdout END ====
[2025-12-11 15:58:32] 2025-12-11 20:58:32,513 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-11 15:58:32] 2025-12-11 20:58:32,518 [wrapper] pilotpid: 22083
[2025-12-11 15:58:32] 2025-12-11 20:58:32,523 [wrapper] Pilot exit status: 0
[2025-12-11 15:58:32] 2025-12-11 20:58:32,539 [wrapper] pandaids: 6926675251 6926675251
[2025-12-11 15:58:32] 2025-12-11 20:58:32,596 [wrapper] cleanup supervisor_pilot 13453 22084
[2025-12-11 15:58:32] 2025-12-11 20:58:32,601 [wrapper] Test setup, not cleaning
[2025-12-11 15:58:32] 2025-12-11 20:58:32,606 [wrapper] apfmon messages muted
[2025-12-11 15:58:32] 2025-12-11 20:58:32,610 [wrapper] ==== wrapper stdout END ====
[2025-12-11 15:58:32] 2025-12-11 20:58:32,614 [wrapper] ==== wrapper stderr END ====
[2025-12-11 15:58:32]  *** Error codes and diagnostics ***
[2025-12-11 15:58:32]     "exeErrorCode": 0,
[2025-12-11 15:58:32]     "exeErrorDiag": "",
[2025-12-11 15:58:32]     "pilotErrorCode": 0,
[2025-12-11 15:58:32]     "pilotErrorDiag": "",
[2025-12-11 15:58:32]  *** Listing of results directory ***
[2025-12-11 15:58:32] total 1240168
[2025-12-11 15:58:32] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2025-12-11 15:58:32] -rw-r--r-- 1 boincer umatlas      5112 Dec 11 05:23 queuedata.json
[2025-12-11 15:58:32] -rwx------ 1 boincer umatlas     36292 Dec 11 05:23 runpilot2-wrapper.sh
[2025-12-11 15:58:32] -rw-r--r-- 1 boincer umatlas    579449 Dec 11 05:23 pilot3.tar.gz
[2025-12-11 15:58:32] -rw-r--r-- 1 boincer umatlas       100 Dec 11 05:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-11 15:58:32] -rwxr-xr-x 1 boincer umatlas      7986 Dec 11 05:28 run_atlas
[2025-12-11 15:58:32] -rw-r--r-- 1 boincer umatlas       105 Dec 11 05:28 job.xml
[2025-12-11 15:58:32] -rw-r--r-- 3 boincer umatlas 327422004 Dec 11 05:28 EVNT.47866683._000005.pool.root.1
[2025-12-11 15:58:32] -rw-r--r-- 3 boincer umatlas 327422004 Dec 11 05:28 ATLAS.root_0
[2025-12-11 15:58:32] -rw-r--r-- 2 boincer umatlas     15847 Dec 11 05:28 start_atlas.sh
[2025-12-11 15:58:32] drwxrwx--x 2 boincer umatlas      4096 Dec 11 05:28 shared
[2025-12-11 15:58:32] -rw-r--r-- 2 boincer umatlas    592570 Dec 11 05:28 input.tar.gz
[2025-12-11 15:58:32] -rw-r--r-- 1 boincer umatlas         0 Dec 11 05:28 boinc_lockfile
[2025-12-11 15:58:32] -rw-r--r-- 1 boincer umatlas      2845 Dec 11 07:31 pandaJob.out
[2025-12-11 15:58:32] -rw------- 1 boincer umatlas        57 Dec 11 07:31 setup.sh.local
[2025-12-11 15:58:32] -rw------- 1 boincer umatlas    991410 Dec 11 07:31 agis_schedconf.cvmfs.json
[2025-12-11 15:58:32] -rw-r--r-- 1 boincer umatlas       533 Dec 11 15:50 boinc_task_state.xml
[2025-12-11 15:58:32] -rw-r--r-- 1 boincer umatlas      5911 Dec 11 15:55 init_data.xml
[2025-12-11 15:58:32] -rw------- 1 boincer umatlas 598985559 Dec 11 15:56 HITS.47866687._000043.pool.root.1
[2025-12-11 15:58:32] -rw------- 1 boincer umatlas      1061 Dec 11 15:57 memory_monitor_summary.json
[2025-12-11 15:58:32] -rw------- 1 boincer umatlas   1516240 Dec 11 15:57 agis_ddmendpoints.agis.ALL.json
[2025-12-11 15:58:32] -rw------- 1 boincer umatlas   1864993 Dec 11 15:57 log.47866687._000043.job.log.tgz.1
[2025-12-11 15:58:32] -rw------- 1 boincer umatlas     27872 Dec 11 15:57 heartbeat.json
[2025-12-11 15:58:32] -rw------- 1 boincer umatlas        96 Dec 11 15:58 pilot_heartbeat.json
[2025-12-11 15:58:32] -rw-r--r-- 1 boincer umatlas        29 Dec 11 15:58 wrapper_checkpoint.txt
[2025-12-11 15:58:32] -rw-r--r-- 1 boincer umatlas      8192 Dec 11 15:58 boinc_mmap_file
[2025-12-11 15:58:32] -rw------- 1 boincer umatlas      4818 Dec 11 15:58 pilotlog.txt
[2025-12-11 15:58:32] -rw------- 1 boincer umatlas   4202229 Dec 11 15:58 log.47866687._000043.job.log.1
[2025-12-11 15:58:32] -rw------- 1 boincer umatlas       353 Dec 11 15:58 output.list
[2025-12-11 15:58:32] -rw-r--r-- 1 boincer umatlas       620 Dec 11 15:58 runtime_log
[2025-12-11 15:58:32] -rw------- 1 boincer umatlas   6103040 Dec 11 15:58 result.tar.gz
[2025-12-11 15:58:32] -rw------- 1 boincer umatlas       792 Dec 11 15:58 CfHKDmt0sn8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmM8MKDm31KLSm.diag
[2025-12-11 15:58:32] -rw-r--r-- 1 boincer umatlas      9423 Dec 11 15:58 runtime_log.err
[2025-12-11 15:58:32] -rw-r--r-- 1 boincer umatlas     23314 Dec 11 15:58 stderr.txt
[2025-12-11 15:58:32] HITS file was successfully produced:
[2025-12-11 15:58:32] -rw------- 1 boincer umatlas 598985559 Dec 11 15:56 shared/HITS.pool.root.1
[2025-12-11 15:58:32]  *** Contents of shared directory: ***
[2025-12-11 15:58:32] total 911264
[2025-12-11 15:58:32] -rw-r--r-- 3 boincer umatlas 327422004 Dec 11 05:28 ATLAS.root_0
[2025-12-11 15:58:32] -rw-r--r-- 2 boincer umatlas     15847 Dec 11 05:28 start_atlas.sh
[2025-12-11 15:58:32] -rw-r--r-- 2 boincer umatlas    592570 Dec 11 05:28 input.tar.gz
[2025-12-11 15:58:32] -rw------- 1 boincer umatlas 598985559 Dec 11 15:56 HITS.pool.root.1
[2025-12-11 15:58:32] -rw------- 1 boincer umatlas   6103040 Dec 11 15:58 result.tar.gz
15:58:33 (17966): run_atlas exited; CPU time 229714.374541
15:58:33 (17966): called boinc_finish(0)

</stderr_txt>
]]>

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