Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
22:35:28 (639103): wrapper (7.7.26015): starting
22:35:28 (639103): wrapper: running run_atlas (--nthreads 4)
[2025-12-11 22:35:28] Arguments: --nthreads 4
[2025-12-11 22:35:28] Threads: 4
[2025-12-11 22:35:28] Checking for CVMFS
[2025-12-11 22:35:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-11 22:35:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-11 22:35:28] Running cvmfs_config stat atlas.cern.ch
[2025-12-11 22:35:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-11 22:35:28] 2.13.2.0 15124 806 51224 153909 2 76 3381492 4096001 3168 130560 0 1491184 99.966 123274 2107 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-11 22:35:28] CVMFS is ok
[2025-12-11 22:35:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-11 22:35:28] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-11 22:35:28] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-11 22:35:28] Further information can be found at the LHC@home message board.
[2025-12-11 22:35:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-11 22:35:28] Checking for apptainer binary...
[2025-12-11 22:35:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-11 22:35:28] Running /usr/bin/apptainer --version
[2025-12-11 22:35:28] apptainer version 1.4.3
[2025-12-11 22:35:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-11 22:35:28] Taichi-Ubuntu
[2025-12-11 22:35:28] apptainer works
[2025-12-11 22:35:28] Set ATHENA_PROC_NUMBER=4
[2025-12-11 22:35:28] Set ATHENA_CORE_NUMBER=4
[2025-12-11 22:35:28] Starting ATLAS job with PandaID=6926675249
[2025-12-11 22:35:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-12 07:31:36]  *** The last 200 lines of the pilot log: ***
[2025-12-12 07:31:36] 2025-12-12 12:30:50,425 | INFO     | time since job start (32108s) is within the limit (174528.0s)
[2025-12-12 07:31:36] 2025-12-12 12:30:51,610 | INFO     | monitor loop #2361: job 0:6926675249 is in state 'finished'
[2025-12-12 07:31:36] 2025-12-12 12:30:51,611 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-12 07:31:36] 2025-12-12 12:30:52,432 | INFO     | time since job start (32110s) is within the limit (174528.0s)
[2025-12-12 07:31:36] 2025-12-12 12:30:53,858 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-12 07:31:36] 2025-12-12 12:30:53,867 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 3046.4511041666665
[2025-12-12 07:31:36] 2025-12-12 12:30:53,877 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/8/PanDA_Pilot-6926675249/memory_monitor_summary.json (trf name=prmon)
[2025-12-12 07:31:36] 2025-12-12 12:30:53,878 | INFO     | extracted standard info from prmon json
[2025-12-12 07:31:36] 2025-12-12 12:30:53,878 | INFO     | extracted standard memory fields from prmon json
[2025-12-12 07:31:36] 2025-12-12 12:30:53,878 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-12 07:31:36] 2025-12-12 12:30:53,889 | INFO     | fitting pss+swap vs Time
[2025-12-12 07:31:36] 2025-12-12 12:30:53,890 | INFO     | sum of square deviations: 45126753087.5
[2025-12-12 07:31:36] 2025-12-12 12:30:53,895 | INFO     | sum of deviations: 264861324547.00003
[2025-12-12 07:31:36] 2025-12-12 12:30:53,896 | INFO     | mean x: 1765526588.5
[2025-12-12 07:31:36] 2025-12-12 12:30:53,896 | INFO     | mean y: 2617891.874524715
[2025-12-12 07:31:36] 2025-12-12 12:30:53,896 | INFO     | intersect: -10359743207.900362
[2025-12-12 07:31:36] 2025-12-12 12:30:53,896 | INFO     | chi2: 4.3562882075417635
[2025-12-12 07:31:36] 2025-12-12 12:30:53,897 | INFO     | sum of square deviations: 43852059420.0
[2025-12-12 07:31:36] 2025-12-12 12:30:53,903 | INFO     | sum of deviations: 369257676635.0
[2025-12-12 07:31:36] 2025-12-12 12:30:53,903 | INFO     | mean x: 1765526436.0
[2025-12-12 07:31:36] 2025-12-12 12:30:53,903 | INFO     | mean y: 2630344.8886756236
[2025-12-12 07:31:36] 2025-12-12 12:30:53,903 | INFO     | intersect: -14864041789.047606
[2025-12-12 07:31:36] 2025-12-12 12:30:53,904 | INFO     | chi2: 2.586481571843812
[2025-12-12 07:31:36] 2025-12-12 12:30:53,904 | INFO     | current chi2=2.586481571843812 (change=40.6264817978296 %)
[2025-12-12 07:31:36] 2025-12-12 12:30:53,905 | INFO     | sum of square deviations: 42601598765.0
[2025-12-12 07:31:36] 2025-12-12 12:30:53,909 | INFO     | sum of deviations: 362837499926.49994
[2025-12-12 07:31:36] 2025-12-12 12:30:53,909 | INFO     | mean x: 1765526283.5
[2025-12-12 07:31:36] 2025-12-12 12:30:53,909 | INFO     | mean y: 2629561.9321705424
[2025-12-12 07:31:36] 2025-12-12 12:30:53,909 | INFO     | intersect: -15034344667.447199
[2025-12-12 07:31:36] 2025-12-12 12:30:53,909 | INFO     | chi2: 2.5863583202379274
[2025-12-12 07:31:36] 2025-12-12 12:30:53,909 | INFO     | current chi2=2.5863583202379274 (change=0.004765222657147442 %)
[2025-12-12 07:31:36] 2025-12-12 12:30:53,910 | INFO     | right removable region: 515
[2025-12-12 07:31:36] 2025-12-12 12:30:53,910 | INFO     | sum of square deviations: 43852059420.0
[2025-12-12 07:31:36] 2025-12-12 12:30:53,913 | INFO     | sum of deviations: 124724647410.99998
[2025-12-12 07:31:36] 2025-12-12 12:30:53,913 | INFO     | mean x: 1765526741.0
[2025-12-12 07:31:36] 2025-12-12 12:30:53,913 | INFO     | mean y: 2634623.16890595
[2025-12-12 07:31:36] 2025-12-12 12:30:53,913 | INFO     | intersect: -5018901495.736519
[2025-12-12 07:31:36] 2025-12-12 12:30:53,914 | INFO     | chi2: 1.8216174628075361
[2025-12-12 07:31:36] 2025-12-12 12:30:53,914 | INFO     | current chi2=1.8216174628075361 (change=58.18418396528755 %)
[2025-12-12 07:31:36] 2025-12-12 12:30:53,914 | INFO     | sum of square deviations: 42601598765.0
[2025-12-12 07:31:36] 2025-12-12 12:30:53,917 | INFO     | sum of deviations: 113016789981.99997
[2025-12-12 07:31:36] 2025-12-12 12:30:53,918 | INFO     | mean x: 1765526893.5
[2025-12-12 07:31:36] 2025-12-12 12:30:53,918 | INFO     | mean y: 2636048.519379845
[2025-12-12 07:31:36] 2025-12-12 12:30:53,918 | INFO     | intersect: -4681089161.676082
[2025-12-12 07:31:36] 2025-12-12 12:30:53,918 | INFO     | chi2: 1.814437725988427
[2025-12-12 07:31:36] 2025-12-12 12:30:53,918 | INFO     | current chi2=1.814437725988427 (change=0.3941407548895289 %)
[2025-12-12 07:31:36] 2025-12-12 12:30:53,918 | INFO     | left removable region: 20
[2025-12-12 07:31:36] 2025-12-12 12:30:53,919 | INFO     | sum of square deviations: 37609040040.0
[2025-12-12 07:31:36] 2025-12-12 12:30:53,922 | INFO     | sum of deviations: 198863415755.99997
[2025-12-12 07:31:36] 2025-12-12 12:30:53,922 | INFO     | mean x: 1765526863.0
[2025-12-12 07:31:36] 2025-12-12 12:30:53,922 | INFO     | mean y: 2649785.860606061
[2025-12-12 07:31:36] 2025-12-12 12:30:53,922 | INFO     | intersect: -9332837166.524672
[2025-12-12 07:31:36] 2025-12-12 12:30:53,922 | INFO     | chi2: 0.018056014977359605
[2025-12-12 07:31:36] 2025-12-12 12:30:53,923 | INFO     | current memory leak: 5.29 B/s (using 495 data points, chi2=0.02)
[2025-12-12 07:31:36] 2025-12-12 12:30:53,923 | INFO     | could have reported an average CPU frequency of 3145 MHz (21 samples)
[2025-12-12 07:31:36] 2025-12-12 12:30:53,923 | INFO     | ..............................
[2025-12-12 07:31:36] 2025-12-12 12:30:53,923 | INFO     | . Timing measurements:
[2025-12-12 07:31:36] 2025-12-12 12:30:53,923 | INFO     | . get job = 0 s
[2025-12-12 07:31:36] 2025-12-12 12:30:53,923 | INFO     | . initial setup = 3 s
[2025-12-12 07:31:36] 2025-12-12 12:30:53,923 | INFO     | . payload setup = 11 s
[2025-12-12 07:31:36] 2025-12-12 12:30:53,923 | INFO     | . stage-in = 0 s
[2025-12-12 07:31:36] 2025-12-12 12:30:53,924 | INFO     | . payload execution = 32070 s
[2025-12-12 07:31:36] 2025-12-12 12:30:53,924 | INFO     | . stage-out = 3 s
[2025-12-12 07:31:36] 2025-12-12 12:30:53,924 | INFO     | . log creation = 0 s
[2025-12-12 07:31:36] 2025-12-12 12:30:53,924 | INFO     | ..............................
[2025-12-12 07:31:36] 2025-12-12 12:30:53,993 | INFO     | 
[2025-12-12 07:31:36] 2025-12-12 12:30:53,994 | INFO     | job summary report
[2025-12-12 07:31:36] 2025-12-12 12:30:53,994 | INFO     | --------------------------------------------------
[2025-12-12 07:31:36] 2025-12-12 12:30:53,994 | INFO     | PanDA job id: 6926675249
[2025-12-12 07:31:36] 2025-12-12 12:30:53,994 | INFO     | task id: 47866687
[2025-12-12 07:31:36] 2025-12-12 12:30:53,994 | INFO     | errors: (none)
[2025-12-12 07:31:36] 2025-12-12 12:30:53,994 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-12 07:31:36] 2025-12-12 12:30:53,994 | INFO     | pilot state: finished 
[2025-12-12 07:31:36] 2025-12-12 12:30:53,994 | INFO     | transexitcode: 0
[2025-12-12 07:31:36] 2025-12-12 12:30:53,994 | INFO     | exeerrorcode: 0
[2025-12-12 07:31:36] 2025-12-12 12:30:53,994 | INFO     | exeerrordiag: 
[2025-12-12 07:31:36] 2025-12-12 12:30:53,994 | INFO     | exitcode: 0
[2025-12-12 07:31:36] 2025-12-12 12:30:53,994 | INFO     | exitmsg: OK
[2025-12-12 07:31:36] 2025-12-12 12:30:53,994 | INFO     | cpuconsumptiontime: 127143 s
[2025-12-12 07:31:36] 2025-12-12 12:30:53,994 | INFO     | nevents: 1000
[2025-12-12 07:31:36] 2025-12-12 12:30:53,994 | INFO     | neventsw: 0
[2025-12-12 07:31:36] 2025-12-12 12:30:53,994 | INFO     | pid: 661769
[2025-12-12 07:31:36] 2025-12-12 12:30:53,995 | INFO     | pgrp: 661769
[2025-12-12 07:31:36] 2025-12-12 12:30:53,995 | INFO     | corecount: 4
[2025-12-12 07:31:36] 2025-12-12 12:30:53,995 | INFO     | event service: False
[2025-12-12 07:31:36] 2025-12-12 12:30:53,995 | INFO     | sizes: {0: 2284392, 1: 2284591, 5: 2284853, 11: 2284909, 32085: 2344052, 32086: 2344051, 32090: 2353313, 32095: 2353503}
[2025-12-12 07:31:36] 2025-12-12 12:30:53,995 | INFO     | --------------------------------------------------
[2025-12-12 07:31:36] 2025-12-12 12:30:53,995 | INFO     | 
[2025-12-12 07:31:36] 2025-12-12 12:30:53,995 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/8
[2025-12-12 07:31:36] 2025-12-12 12:30:54,022 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-12 07:31:36] 2025-12-12 12:30:54,023 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-12 07:31:36] 2025-12-12 12:30:54,023 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-12 07:31:36] 2025-12-12 12:30:54,023 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-12 07:31:36] 2025-12-12 12:30:54,023 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-12 07:31:36] 2025-12-12 12:30:54,023 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-12 07:31:36] 2025-12-12 12:30:54,023 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-12 07:31:36] 2025-12-12 12:30:54,023 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-12 07:31:36] 2025-12-12 12:30:54,024 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-12 07:31:36] 2025-12-12 12:30:54,024 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-12 07:31:36] 2025-12-12 12:30:54,024 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-12 07:31:36] 2025-12-12 12:30:54,024 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-12 07:31:36] 2025-12-12 12:30:54,024 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-12 07:31:36] 2025-12-12 12:30:54,024 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-12 07:31:36] 2025-12-12 12:30:54,024 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-12 07:31:36] 2025-12-12 12:30:54,024 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-12 07:31:36] 2025-12-12 12:30:54,024 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-12 07:31:36] 2025-12-12 12:30:54,025 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-12 07:31:36] 2025-12-12 12:30:54,025 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-12 07:31:36] 2025-12-12 12:30:54,025 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-12 07:31:36] 2025-12-12 12:30:54,025 | INFO     | job 6926675249 has completed (purged errors)
[2025-12-12 07:31:36] 2025-12-12 12:30:54,025 | INFO     | overall cleanup function is called
[2025-12-12 07:31:36] 2025-12-12 12:30:55,045 | INFO     | --- collectZombieJob: --- 10, [661769]
[2025-12-12 07:31:36] 2025-12-12 12:30:55,046 | INFO     | zombie collector waiting for pid 661769
[2025-12-12 07:31:36] 2025-12-12 12:30:55,046 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-12 07:31:36] 2025-12-12 12:30:55,047 | INFO     | collected zombie processes
[2025-12-12 07:31:36] 2025-12-12 12:30:55,047 | INFO     | will attempt to kill all subprocesses of pid=661769
[2025-12-12 07:31:36] 2025-12-12 12:30:55,369 | INFO     | process IDs to be killed: [661769] (in reverse order)
[2025-12-12 07:31:36] 2025-12-12 12:30:55,455 | WARNING  | found no corresponding commands to process id(s)
[2025-12-12 07:31:36] 2025-12-12 12:30:55,455 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-12 07:31:36] 2025-12-12 12:30:55,468 | INFO     | did not find any defunct processes belonging to 661769
[2025-12-12 07:31:36] 2025-12-12 12:30:55,482 | INFO     | did not find any defunct processes belonging to 661769
[2025-12-12 07:31:36] 2025-12-12 12:30:55,483 | INFO     | ready for new job
[2025-12-12 07:31:36] 2025-12-12 12:30:55,483 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-12 07:31:36] 2025-12-12 12:30:55,487 | INFO     | ***************************************
[2025-12-12 07:31:36] 2025-12-12 12:30:55,487 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-12 07:31:36] 2025-12-12 12:30:55,487 | INFO     | ***************************************
[2025-12-12 07:31:36] 2025-12-12 12:30:55,487 | INFO     | 
[2025-12-12 07:31:36] 2025-12-12 12:30:55,489 | INFO     | architecture information:
[2025-12-12 07:31:36] 2025-12-12 12:30:55,490 | INFO     | executing command: cat /etc/os-release
[2025-12-12 07:31:36] 2025-12-12 12:30:55,510 | INFO     | cat /etc/os-release:
[2025-12-12 07:31:36] NAME="CentOS Linux"
[2025-12-12 07:31:36] VERSION="7 (Core)"
[2025-12-12 07:31:36] ID="centos"
[2025-12-12 07:31:36] ID_LIKE="rhel fedora"
[2025-12-12 07:31:36] VERSION_ID="7"
[2025-12-12 07:31:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-12 07:31:36] ANSI_COLOR="0;31"
[2025-12-12 07:31:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-12 07:31:36] HOME_URL="https://www.centos.org/"
[2025-12-12 07:31:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-12 07:31:36] 
[2025-12-12 07:31:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-12 07:31:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-12 07:31:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-12 07:31:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-12 07:31:36] 
[2025-12-12 07:31:36] 2025-12-12 12:30:55,511 | INFO     | ***************************************
[2025-12-12 07:31:36] 2025-12-12 12:30:56,015 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/8
[2025-12-12 07:31:36] 2025-12-12 12:30:56,044 | INFO     | sufficient remaining disk space (364043567104 B)
[2025-12-12 07:31:36] 2025-12-12 12:30:56,044 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-12 07:31:36] 2025-12-12 12:30:56,044 | INFO     | current server update state: UPDATING_FINAL
[2025-12-12 07:31:36] 2025-12-12 12:30:56,044 | INFO     | update_server=False
[2025-12-12 07:31:36] 2025-12-12 12:30:56,045 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-12 07:31:36] 2025-12-12 12:30:56,045 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-12 07:31:36] 2025-12-12 12:30:56,045 | INFO     | aborting loop
[2025-12-12 07:31:36] 2025-12-12 12:30:56,431 | INFO     | all data control threads have been joined
[2025-12-12 07:31:36] 2025-12-12 12:30:56,643 | INFO     | all payload control threads have been joined
[2025-12-12 07:31:36] 2025-12-12 12:30:56,646 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-12 07:31:36] 2025-12-12 12:30:57,050 | INFO     | [job] retrieve thread has finished
[2025-12-12 07:31:36] 2025-12-12 12:30:57,051 | INFO     | [job] job monitor thread has finished
[2025-12-12 07:31:36] 2025-12-12 12:30:57,312 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-12 07:31:36] 2025-12-12 12:30:57,319 | INFO     | [job] create_data_payload thread has finished
[2025-12-12 07:31:36] 2025-12-12 12:30:57,437 | INFO     | [data] control thread has finished
[2025-12-12 07:31:36] 2025-12-12 12:30:57,442 | INFO     | all job control threads have been joined
[2025-12-12 07:31:36] 2025-12-12 12:30:57,471 | INFO     | [data] copytool_in thread has finished
[2025-12-12 07:31:36] 2025-12-12 12:30:57,649 | INFO     | [payload] control thread has finished
[2025-12-12 07:31:36] 2025-12-12 12:30:57,700 | INFO     | [payload] failed_post thread has finished
[2025-12-12 07:31:36] 2025-12-12 12:30:58,017 | INFO     | [job] validate thread has finished
[2025-12-12 07:31:36] 2025-12-12 12:30:58,104 | INFO     | [payload] validate_post thread has finished
[2025-12-12 07:31:36] 2025-12-12 12:30:58,232 | INFO     | [payload] execute_payloads thread has finished
[2025-12-12 07:31:36] 2025-12-12 12:30:58,448 | INFO     | [job] control thread has finished
[2025-12-12 07:31:36] 2025-12-12 12:30:58,519 | INFO     | [payload] validate_pre thread has finished
[2025-12-12 07:31:36] 2025-12-12 12:30:58,652 | INFO     | [data] copytool_out thread has finished
[2025-12-12 07:31:36] 2025-12-12 12:30:59,001 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-12 07:31:36] 2025-12-12 12:30:59,228 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-12 07:31:36] 2025-12-12 12:31:00,007 | INFO     | [job] queue monitor thread has finished
[2025-12-12 07:31:36] 2025-12-12 12:31:03,235 | INFO     | [data] queue_monitor thread has finished
[2025-12-12 07:31:36] 2025-12-12 12:31:25,812 | INFO     | PID=646799 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-12 07:31:36] 2025-12-12 12:31:25,812 | INFO     | .. there are 5 such processes running
[2025-12-12 07:31:36] 2025-12-12 12:31:25,812 | INFO     | found 0 job(s) in 20 queues
[2025-12-12 07:31:36] 2025-12-12 12:31:25,813 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-12 07:31:36] 2025-12-12 12:31:25,813 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-12 07:31:36] 2025-12-12 12:31:30,494 | INFO     | [monitor] cgroup control has ended
[2025-12-12 07:31:36] 2025-12-12 12:31:31,141 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139920990807872)>', '<ExcThread(monitor, started 139920203036416)>']
[2025-12-12 07:31:36] 2025-12-12 12:31:31,843 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-12 07:31:36] 2025-12-12 12:31:31,843 | INFO     | [monitor] control thread has ended
[2025-12-12 07:31:36] 2025-12-12 12:31:36,167 | INFO     | all workflow threads have been joined
[2025-12-12 07:31:36] 2025-12-12 12:31:36,167 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-12 07:31:36] 2025-12-12 12:31:36,169 | INFO     | traces error code: 0
[2025-12-12 07:31:36] 2025-12-12 12:31:36,169 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-12 07:31:36] 2025-12-12 12:31:36,347 [wrapper] ==== pilot stdout END ====
[2025-12-12 07:31:36] 2025-12-12 12:31:36,351 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-12 07:31:36] 2025-12-12 12:31:36,355 [wrapper] pilotpid: 646799
[2025-12-12 07:31:36] 2025-12-12 12:31:36,359 [wrapper] Pilot exit status: 0
[2025-12-12 07:31:36] 2025-12-12 12:31:36,373 [wrapper] pandaids: 6926675249
[2025-12-12 07:31:36] 2025-12-12 12:31:36,444 [wrapper] cleanup supervisor_pilot  977233 646801
[2025-12-12 07:31:36] 2025-12-12 12:31:36,450 [wrapper] Test setup, not cleaning
[2025-12-12 07:31:36] 2025-12-12 12:31:36,454 [wrapper] apfmon messages muted
[2025-12-12 07:31:36] 2025-12-12 12:31:36,458 [wrapper] ==== wrapper stdout END ====
[2025-12-12 07:31:36] 2025-12-12 12:31:36,462 [wrapper] ==== wrapper stderr END ====
[2025-12-12 07:31:36]  *** Error codes and diagnostics ***
[2025-12-12 07:31:36]     "exeErrorCode": 0,
[2025-12-12 07:31:36]     "exeErrorDiag": "",
[2025-12-12 07:31:36]     "pilotErrorCode": 0,
[2025-12-12 07:31:36]     "pilotErrorDiag": "",
[2025-12-12 07:31:36]  *** Listing of results directory ***
[2025-12-12 07:31:36] total 912304
[2025-12-12 07:31:36] -rw-r--r-- 1 whitlerd whitlerd    579449 Dec 11 05:18 pilot3.tar.gz
[2025-12-12 07:31:36] -rw-r--r-- 1 whitlerd whitlerd      5112 Dec 11 05:20 queuedata.json
[2025-12-12 07:31:36] -rwx------ 1 whitlerd whitlerd     36292 Dec 11 05:20 runpilot2-wrapper.sh
[2025-12-12 07:31:36] -rw-rw-r-- 1 whitlerd whitlerd       100 Dec 11 22:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-12 07:31:36] -rwxr-xr-x 1 whitlerd whitlerd      7986 Dec 11 22:35 run_atlas
[2025-12-12 07:31:36] -rw-rw-r-- 1 whitlerd whitlerd       105 Dec 11 22:35 job.xml
[2025-12-12 07:31:36] -rw-r--r-- 2 whitlerd whitlerd 327422004 Dec 11 22:35 EVNT.47866683._000005.pool.root.1
[2025-12-12 07:31:36] -rw-r--r-- 2 whitlerd whitlerd     15847 Dec 11 22:35 start_atlas.sh
[2025-12-12 07:31:36] drwxrwx--x 2 whitlerd whitlerd      4096 Dec 11 22:35 shared
[2025-12-12 07:31:36] -rw-r--r-- 2 whitlerd whitlerd    592573 Dec 11 22:35 input.tar.gz
[2025-12-12 07:31:36] -rw-rw-r-- 1 whitlerd whitlerd      9347 Dec 11 22:35 init_data.xml
[2025-12-12 07:31:36] -rw-rw-r-- 1 whitlerd whitlerd         0 Dec 11 22:35 boinc_setup_complete
[2025-12-12 07:31:36] -rw-rw-r-- 1 whitlerd whitlerd         0 Dec 11 22:35 boinc_lockfile
[2025-12-12 07:31:36] -rw-rw-r-- 1 whitlerd whitlerd      2842 Dec 11 22:35 pandaJob.out
[2025-12-12 07:31:36] -rw------- 1 whitlerd whitlerd    990114 Dec 11 22:35 agis_schedconf.cvmfs.json
[2025-12-12 07:31:36] drwx------ 5 whitlerd whitlerd      4096 Dec 11 22:35 pilot3
[2025-12-12 07:31:36] -rw-rw-r-- 1 whitlerd whitlerd       533 Dec 12 07:26 boinc_task_state.xml
[2025-12-12 07:31:36] -rw------- 1 whitlerd whitlerd 590783583 Dec 12 07:30 HITS.47866687._000041.pool.root.1
[2025-12-12 07:31:36] -rw------- 1 whitlerd whitlerd      1049 Dec 12 07:30 memory_monitor_summary.json
[2025-12-12 07:31:36] -rw------- 1 whitlerd whitlerd   1516240 Dec 12 07:30 agis_ddmendpoints.agis.ALL.json
[2025-12-12 07:31:36] -rw------- 1 whitlerd whitlerd   1434157 Dec 12 07:30 log.47866687._000041.job.log.tgz.1
[2025-12-12 07:31:36] -rw------- 1 whitlerd whitlerd        95 Dec 12 07:30 pilot_heartbeat.json
[2025-12-12 07:31:36] -rw------- 1 whitlerd whitlerd     28204 Dec 12 07:30 heartbeat.json
[2025-12-12 07:31:36] -rw-rw-r-- 1 whitlerd whitlerd      8192 Dec 12 07:31 boinc_mmap_file
[2025-12-12 07:31:36] -rw-rw-r-- 1 whitlerd whitlerd        29 Dec 12 07:31 wrapper_checkpoint.txt
[2025-12-12 07:31:36] -rw------- 1 whitlerd whitlerd      4837 Dec 12 07:31 pilotlog.txt
[2025-12-12 07:31:36] -rw------- 1 whitlerd whitlerd   4579932 Dec 12 07:31 log.47866687._000041.job.log.1
[2025-12-12 07:31:36] -rw------- 1 whitlerd whitlerd       353 Dec 12 07:31 output.list
[2025-12-12 07:31:36] -rw-rw-r-- 1 whitlerd whitlerd       620 Dec 12 07:31 runtime_log
[2025-12-12 07:31:36] -rw------- 1 whitlerd whitlerd   6051840 Dec 12 07:31 result.tar.gz
[2025-12-12 07:31:36] -rw-rw-r-- 1 whitlerd whitlerd      9026 Dec 12 07:31 runtime_log.err
[2025-12-12 07:31:36] -rw------- 1 whitlerd whitlerd       657 Dec 12 07:31 7UJLDmrxsn8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUfQKDm3fbZvn.diag
[2025-12-12 07:31:36] -rw-rw-r-- 1 whitlerd whitlerd     21268 Dec 12 07:31 stderr.txt
[2025-12-12 07:31:36] HITS file was successfully produced:
[2025-12-12 07:31:36] -rw------- 1 whitlerd whitlerd 590783583 Dec 12 07:30 shared/HITS.pool.root.1
[2025-12-12 07:31:36]  *** Contents of shared directory: ***
[2025-12-12 07:31:36] total 903208
[2025-12-12 07:31:36] -rw-r--r-- 2 whitlerd whitlerd 327422004 Dec 11 22:35 ATLAS.root_0
[2025-12-12 07:31:36] -rw-r--r-- 2 whitlerd whitlerd     15847 Dec 11 22:35 start_atlas.sh
[2025-12-12 07:31:36] -rw-r--r-- 2 whitlerd whitlerd    592573 Dec 11 22:35 input.tar.gz
[2025-12-12 07:31:36] -rw------- 1 whitlerd whitlerd 590783583 Dec 12 07:30 HITS.pool.root.1
[2025-12-12 07:31:36] -rw------- 1 whitlerd whitlerd   6051840 Dec 12 07:31 result.tar.gz
07:31:38 (639103): run_atlas exited; CPU time 127116.826756
07:31:38 (639103): called boinc_finish(0)

</stderr_txt>
]]>

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