Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:34:55 (135511): wrapper (7.7.26015): starting
12:34:55 (135511): wrapper: running run_atlas (--nthreads 3)
[2025-12-11 12:34:55] Arguments: --nthreads 3
[2025-12-11 12:34:55] Threads: 3
[2025-12-11 12:34:55] Checking for CVMFS
[2025-12-11 12:34:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-11 12:34:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-11 12:34:55] Running cvmfs_config stat atlas.cern.ch
[2025-12-11 12:34:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-11 12:34:55] 2.9.2.0 70946 480 54672 153883 1 81 19366258 36864001 0 130560 0 176588 99.972 24562 1042 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-11 12:34:55] CVMFS is ok
[2025-12-11 12:34:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-11 12:34:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-11 12:34:55] Further information can be found at the LHC@home message board.
[2025-12-11 12:34:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-11 12:34:55] Checking for apptainer binary...
[2025-12-11 12:34:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-11 12:34:55] Running /usr/bin/apptainer --version
[2025-12-11 12:34:55] apptainer version 1.4.1-1.1
[2025-12-11 12:34:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-11 12:34:55] magicA246a
[2025-12-11 12:34:55] apptainer works
[2025-12-11 12:34:55] Set ATHENA_PROC_NUMBER=3
[2025-12-11 12:34:55] Set ATHENA_CORE_NUMBER=3
[2025-12-11 12:34:55] Starting ATLAS job with PandaID=6895368171
[2025-12-11 12:34:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-11 20:31:39]  *** The last 200 lines of the pilot log: ***
[2025-12-11 20:31:39] 2025-12-11 19:30:51,962 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-11 20:31:39] 2025-12-11 19:30:51,962 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-11 20:31:39] 2025-12-11 19:30:51,962 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-11 20:31:39] 2025-12-11 19:30:51,962 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-11 20:31:39] 2025-12-11 19:30:51,962 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-11 20:31:39] 2025-12-11 19:30:51,962 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-11 20:31:39] 2025-12-11 19:30:51,962 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-11 20:31:39] 2025-12-11 19:30:51,962 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-11 20:31:39] 2025-12-11 19:30:51,962 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-11 20:31:39] 2025-12-11 19:30:51,962 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-11 20:31:39] 2025-12-11 19:30:51,962 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-11 20:31:39] 2025-12-11 19:30:51,962 | INFO     | job 6895368171 has completed (purged errors)
[2025-12-11 20:31:39] 2025-12-11 19:30:51,962 | INFO     | overall cleanup function is called
[2025-12-11 20:31:39] 2025-12-11 19:30:52,971 | INFO     | --- collectZombieJob: --- 10, [145692]
[2025-12-11 20:31:39] 2025-12-11 19:30:52,971 | INFO     | zombie collector waiting for pid 145692
[2025-12-11 20:31:39] 2025-12-11 19:30:52,972 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-11 20:31:39] 2025-12-11 19:30:52,972 | INFO     | collected zombie processes
[2025-12-11 20:31:39] 2025-12-11 19:30:52,972 | INFO     | will attempt to kill all subprocesses of pid=145692
[2025-12-11 20:31:39] 2025-12-11 19:30:53,017 | INFO     | process IDs to be killed: [145692] (in reverse order)
[2025-12-11 20:31:39] 2025-12-11 19:30:53,042 | WARNING  | found no corresponding commands to process id(s)
[2025-12-11 20:31:39] 2025-12-11 19:30:53,042 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-11 20:31:39] 2025-12-11 19:30:53,043 | INFO     | did not find any defunct processes belonging to 145692
[2025-12-11 20:31:39] 2025-12-11 19:30:53,045 | INFO     | did not find any defunct processes belonging to 145692
[2025-12-11 20:31:39] 2025-12-11 19:30:53,045 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-11 20:31:39] 2025-12-11 19:30:53,045 | INFO     | ready for new job
[2025-12-11 20:31:39] 2025-12-11 19:30:53,045 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-11 20:31:39] 2025-12-11 19:30:53,046 | INFO     | ***************************************
[2025-12-11 20:31:39] 2025-12-11 19:30:53,047 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-11 20:31:39] 2025-12-11 19:30:53,047 | INFO     | ***************************************
[2025-12-11 20:31:39] 2025-12-11 19:30:53,047 | INFO     | 
[2025-12-11 20:31:39] 2025-12-11 19:30:53,047 | INFO     | architecture information:
[2025-12-11 20:31:39] 2025-12-11 19:30:53,047 | INFO     | executing command: cat /etc/os-release
[2025-12-11 20:31:39] 2025-12-11 19:30:53,056 | INFO     | cat /etc/os-release:
[2025-12-11 20:31:39] NAME="CentOS Linux"
[2025-12-11 20:31:39] VERSION="7 (Core)"
[2025-12-11 20:31:39] ID="centos"
[2025-12-11 20:31:39] ID_LIKE="rhel fedora"
[2025-12-11 20:31:39] VERSION_ID="7"
[2025-12-11 20:31:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-11 20:31:39] ANSI_COLOR="0;31"
[2025-12-11 20:31:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-11 20:31:39] HOME_URL="https://www.centos.org/"
[2025-12-11 20:31:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-11 20:31:39] 
[2025-12-11 20:31:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-11 20:31:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-11 20:31:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-11 20:31:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-11 20:31:39] 
[2025-12-11 20:31:39] 2025-12-11 19:30:53,056 | INFO     | ***************************************
[2025-12-11 20:31:39] 2025-12-11 19:30:53,560 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-11 20:31:39] 2025-12-11 19:30:53,573 | INFO     | sufficient remaining disk space (284494397440 B)
[2025-12-11 20:31:39] 2025-12-11 19:30:53,573 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-11 20:31:39] 2025-12-11 19:30:53,573 | INFO     | current server update state: UPDATING_FINAL
[2025-12-11 20:31:39] 2025-12-11 19:30:53,573 | INFO     | update_server=False
[2025-12-11 20:31:39] 2025-12-11 19:30:53,573 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-11 20:31:39] 2025-12-11 19:30:53,573 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-11 20:31:39] 2025-12-11 19:30:53,574 | INFO     | found 0 job(s) in 20 queues
[2025-12-11 20:31:39] 2025-12-11 19:30:53,574 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-11 20:31:39] 2025-12-11 19:30:53,574 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-11 20:31:39] 2025-12-11 19:30:53,574 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-11 20:31:39] 2025-12-11 19:30:53,574 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-11 20:31:39] 2025-12-11 19:30:53,574 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-11 20:31:39] 2025-12-11 19:30:53,574 | INFO     | aborting loop
[2025-12-11 20:31:39] 2025-12-11 19:30:53,794 | INFO     | all data control threads have been joined
[2025-12-11 20:31:39] 2025-12-11 19:30:54,115 | INFO     | all payload control threads have been joined
[2025-12-11 20:31:39] 2025-12-11 19:30:54,436 | INFO     | all job control threads have been joined
[2025-12-11 20:31:39] 2025-12-11 19:30:54,553 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-11 20:31:39] 2025-12-11 19:30:54,579 | INFO     | [job] retrieve thread has finished
[2025-12-11 20:31:39] 2025-12-11 19:30:54,579 | INFO     | [job] queue monitor thread has finished
[2025-12-11 20:31:39] 2025-12-11 19:30:54,579 | INFO     | [job] job monitor thread has finished
[2025-12-11 20:31:39] 2025-12-11 19:30:54,800 | INFO     | [data] control thread has finished
[2025-12-11 20:31:39] 2025-12-11 19:30:55,001 | INFO     | [payload] validate_post thread has finished
[2025-12-11 20:31:39] 2025-12-11 19:30:55,121 | INFO     | [payload] control thread has finished
[2025-12-11 20:31:39] 2025-12-11 19:30:55,123 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-11 20:31:39] 2025-12-11 19:30:55,247 | INFO     | [payload] execute_payloads thread has finished
[2025-12-11 20:31:39] 2025-12-11 19:30:55,442 | INFO     | [job] control thread has finished
[2025-12-11 20:31:39] 2025-12-11 19:30:55,447 | INFO     | [data] copytool_in thread has finished
[2025-12-11 20:31:39] 2025-12-11 19:30:56,020 | INFO     | [payload] validate_pre thread has finished
[2025-12-11 20:31:39] 2025-12-11 19:30:56,037 | INFO     | [job] create_data_payload thread has finished
[2025-12-11 20:31:39] 2025-12-11 19:30:56,046 | INFO     | [job] validate thread has finished
[2025-12-11 20:31:39] 2025-12-11 19:30:56,080 | INFO     | [payload] failed_post thread has finished
[2025-12-11 20:31:39] 2025-12-11 19:30:56,559 | INFO     | [data] copytool_out thread has finished
[2025-12-11 20:31:39] 2025-12-11 19:30:57,581 | INFO     | [data] queue_monitor thread has finished
[2025-12-11 20:31:39] 2025-12-11 19:31:33,358 | INFO     | [monitor] cgroup control has ended
[2025-12-11 20:31:39] 2025-12-11 19:31:34,524 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140101490534208)>', '<ExcThread(monitor, started 140100482623232)>']
[2025-12-11 20:31:39] 2025-12-11 19:31:34,786 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-11 20:31:39] 2025-12-11 19:31:34,787 | INFO     | [monitor] control thread has ended
[2025-12-11 20:31:39] 2025-12-11 19:31:39,550 | INFO     | all workflow threads have been joined
[2025-12-11 20:31:39] 2025-12-11 19:31:39,550 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-11 20:31:39] 2025-12-11 19:31:39,550 | INFO     | traces error code: 0
[2025-12-11 20:31:39] 2025-12-11 19:31:39,550 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-11 20:31:39] 2025-12-11 19:31:39,604 [wrapper] ==== pilot stdout END ====
[2025-12-11 20:31:39] 2025-12-11 19:31:39,607 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-11 20:31:39] 2025-12-11 19:31:39,609 [wrapper] pilotpid: 139232
[2025-12-11 20:31:39] 2025-12-11 19:31:39,612 [wrapper] Pilot exit status: 0
[2025-12-11 20:31:39] 2025-12-11 19:31:39,619 [wrapper] pandaids: 6895368171
[2025-12-11 20:31:39] 2025-12-11 19:31:39,636 [wrapper] cleanup supervisor_pilot  196617 139233
[2025-12-11 20:31:39] 2025-12-11 19:31:39,639 [wrapper] Test setup, not cleaning
[2025-12-11 20:31:39] 2025-12-11 19:31:39,641 [wrapper] apfmon messages muted
[2025-12-11 20:31:39] 2025-12-11 19:31:39,643 [wrapper] ==== wrapper stdout END ====
[2025-12-11 20:31:39] 2025-12-11 19:31:39,646 [wrapper] ==== wrapper stderr END ====
[2025-12-11 20:31:39]  *** Error codes and diagnostics ***
[2025-12-11 20:31:39]     "exeErrorCode": 0,
[2025-12-11 20:31:39]     "exeErrorDiag": "",
[2025-12-11 20:31:39]     "pilotErrorCode": 0,
[2025-12-11 20:31:39]     "pilotErrorDiag": "",
[2025-12-11 20:31:39]  *** Listing of results directory ***
[2025-12-11 20:31:39] total 1318984
[2025-12-11 20:31:39] -rw-r--r-- 1 boinc boinc      5112 Nov 23 20:32 queuedata.json
[2025-12-11 20:31:39] -rw-r--r-- 1 boinc boinc    576529 Nov 23 20:32 pilot3.tar.gz
[2025-12-11 20:31:39] -rwx------ 1 boinc boinc     36292 Nov 23 20:32 runpilot2-wrapper.sh
[2025-12-11 20:31:39] -rw-r--r-- 1 boinc boinc       100 Dec 11 12:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-11 20:31:39] -rwxr-xr-x 1 boinc boinc      7986 Dec 11 12:34 run_atlas
[2025-12-11 20:31:39] -rw-r--r-- 1 boinc boinc       105 Dec 11 12:34 job.xml
[2025-12-11 20:31:39] -rw-r--r-- 2 boinc boinc 410538589 Dec 11 12:34 EVNT.47483658._000869.pool.root.1
[2025-12-11 20:31:39] -rw-r--r-- 2 boinc boinc    590102 Dec 11 12:34 input.tar.gz
[2025-12-11 20:31:39] -rw-r--r-- 2 boinc boinc     15847 Dec 11 12:34 start_atlas.sh
[2025-12-11 20:31:39] drwxrwx--x 2 boinc boinc      4096 Dec 11 12:34 shared
[2025-12-11 20:31:39] -rw-r--r-- 1 boinc boinc         0 Dec 11 12:34 boinc_setup_complete
[2025-12-11 20:31:39] -rw-r--r-- 1 boinc boinc      6447 Dec 11 12:34 init_data.xml
[2025-12-11 20:31:39] -rw-r--r-- 1 boinc boinc         0 Dec 11 12:34 boinc_lockfile
[2025-12-11 20:31:39] -rw-r--r-- 1 boinc boinc      2786 Dec 11 12:34 pandaJob.out
[2025-12-11 20:31:39] -rw------- 1 boinc boinc    991372 Dec 11 12:35 agis_schedconf.cvmfs.json
[2025-12-11 20:31:39] drwx------ 5 boinc boinc      4096 Dec 11 12:35 pilot3
[2025-12-11 20:31:39] -rw-r--r-- 1 boinc boinc       531 Dec 11 20:28 boinc_task_state.xml
[2025-12-11 20:31:39] -rw------- 1 boinc boinc 925831790 Dec 11 20:30 HITS.47556137._008554.pool.root.1
[2025-12-11 20:31:39] -rw------- 1 boinc boinc        95 Dec 11 20:30 pilot_heartbeat.json
[2025-12-11 20:31:39] -rw------- 1 boinc boinc      1023 Dec 11 20:30 memory_monitor_summary.json
[2025-12-11 20:31:39] -rw------- 1 boinc boinc   1516240 Dec 11 20:30 agis_ddmendpoints.agis.ALL.json
[2025-12-11 20:31:39] -rw------- 1 boinc boinc   1163961 Dec 11 20:30 log.47556137._008554.job.log.tgz.1
[2025-12-11 20:31:39] -rw------- 1 boinc boinc      8562 Dec 11 20:30 heartbeat.json
[2025-12-11 20:31:39] -rw-r--r-- 1 boinc boinc      8192 Dec 11 20:31 boinc_mmap_file
[2025-12-11 20:31:39] -rw-r--r-- 1 boinc boinc        28 Dec 11 20:31 wrapper_checkpoint.txt
[2025-12-11 20:31:39] -rw------- 1 boinc boinc      4556 Dec 11 20:31 pilotlog.txt
[2025-12-11 20:31:39] -rw------- 1 boinc boinc   4013146 Dec 11 20:31 log.47556137._008554.job.log.1
[2025-12-11 20:31:39] -rw------- 1 boinc boinc       353 Dec 11 20:31 output.list
[2025-12-11 20:31:39] -rw-r--r-- 1 boinc boinc       620 Dec 11 20:31 runtime_log
[2025-12-11 20:31:39] -rw------- 1 boinc boinc   5201920 Dec 11 20:31 result.tar.gz
[2025-12-11 20:31:39] -rw-r--r-- 1 boinc boinc      8918 Dec 11 20:31 runtime_log.err
[2025-12-11 20:31:39] -rw------- 1 boinc boinc       669 Dec 11 20:31 MzvKDmW0Uh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmRiIKDm0EGJGm.diag
[2025-12-11 20:31:39] -rw-r--r-- 1 boinc boinc     12068 Dec 11 20:31 stderr.txt
[2025-12-11 20:31:39] HITS file was successfully produced:
[2025-12-11 20:31:39] -rw------- 1 boinc boinc 925831790 Dec 11 20:30 shared/HITS.pool.root.1
[2025-12-11 20:31:39]  *** Contents of shared directory: ***
[2025-12-11 20:31:39] total 1310740
[2025-12-11 20:31:39] -rw-r--r-- 2 boinc boinc 410538589 Dec 11 12:34 ATLAS.root_0
[2025-12-11 20:31:39] -rw-r--r-- 2 boinc boinc    590102 Dec 11 12:34 input.tar.gz
[2025-12-11 20:31:39] -rw-r--r-- 2 boinc boinc     15847 Dec 11 12:34 start_atlas.sh
[2025-12-11 20:31:39] -rw------- 1 boinc boinc 925831790 Dec 11 20:30 HITS.pool.root.1
[2025-12-11 20:31:39] -rw------- 1 boinc boinc   5201920 Dec 11 20:31 result.tar.gz
20:31:41 (135511): run_atlas exited; CPU time 84349.949372
20:31:41 (135511): called boinc_finish(0)

</stderr_txt>
]]>

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