Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:34:36 (70750): wrapper (7.7.26015): starting
04:34:36 (70750): wrapper: running run_atlas (--nthreads 3)
[2025-12-11 04:34:36] Arguments: --nthreads 3
[2025-12-11 04:34:36] Threads: 3
[2025-12-11 04:34:36] Checking for CVMFS
[2025-12-11 04:34:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-11 04:34:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-11 04:34:39] Running cvmfs_config stat atlas.cern.ch
[2025-12-11 04:34:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-11 04:34:39] 2.9.2.0 70946 0 30040 153867 3 1 19234030 36864000 0 130560 0 0 0.000 1335 1243 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-11 04:34:39] CVMFS is ok
[2025-12-11 04:34:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-11 04:34:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-11 04:34:39] Further information can be found at the LHC@home message board.
[2025-12-11 04:34:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-11 04:34:39] Checking for apptainer binary...
[2025-12-11 04:34:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-11 04:34:39] Running /usr/bin/apptainer --version
[2025-12-11 04:34:39] apptainer version 1.4.1-1.1
[2025-12-11 04:34:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-11 04:34:39] magicA246a
[2025-12-11 04:34:39] apptainer works
[2025-12-11 04:34:39] Set ATHENA_PROC_NUMBER=3
[2025-12-11 04:34:39] Set ATHENA_CORE_NUMBER=3
[2025-12-11 04:34:39] Starting ATLAS job with PandaID=6895365476
[2025-12-11 04:34:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-11 12:34:29]  *** The last 200 lines of the pilot log: ***
[2025-12-11 12:34:29] 2025-12-11 11:33:36,729 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-11 12:34:29] 2025-12-11 11:33:36,729 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-11 12:34:29] 2025-12-11 11:33:36,729 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-11 12:34:29] 2025-12-11 11:33:36,729 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-11 12:34:29] 2025-12-11 11:33:36,729 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-11 12:34:29] 2025-12-11 11:33:36,729 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-11 12:34:29] 2025-12-11 11:33:36,729 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-11 12:34:29] 2025-12-11 11:33:36,729 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-11 12:34:29] 2025-12-11 11:33:36,729 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-11 12:34:29] 2025-12-11 11:33:36,729 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-11 12:34:29] 2025-12-11 11:33:36,729 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-11 12:34:29] 2025-12-11 11:33:36,729 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-11 12:34:29] 2025-12-11 11:33:36,729 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-11 12:34:29] 2025-12-11 11:33:36,729 | INFO     | job 6895365476 has completed (purged errors)
[2025-12-11 12:34:29] 2025-12-11 11:33:36,729 | INFO     | overall cleanup function is called
[2025-12-11 12:34:29] 2025-12-11 11:33:37,738 | INFO     | --- collectZombieJob: --- 10, [81478]
[2025-12-11 12:34:29] 2025-12-11 11:33:37,738 | INFO     | zombie collector waiting for pid 81478
[2025-12-11 12:34:29] 2025-12-11 11:33:37,738 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-11 12:34:29] 2025-12-11 11:33:37,738 | INFO     | collected zombie processes
[2025-12-11 12:34:29] 2025-12-11 11:33:37,739 | INFO     | will attempt to kill all subprocesses of pid=81478
[2025-12-11 12:34:29] 2025-12-11 11:33:37,784 | INFO     | process IDs to be killed: [81478] (in reverse order)
[2025-12-11 12:34:29] 2025-12-11 11:33:37,809 | WARNING  | found no corresponding commands to process id(s)
[2025-12-11 12:34:29] 2025-12-11 11:33:37,809 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-11 12:34:29] 2025-12-11 11:33:37,810 | INFO     | did not find any defunct processes belonging to 81478
[2025-12-11 12:34:29] 2025-12-11 11:33:37,811 | INFO     | did not find any defunct processes belonging to 81478
[2025-12-11 12:34:29] 2025-12-11 11:33:37,812 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-11 12:34:29] 2025-12-11 11:33:37,812 | INFO     | ready for new job
[2025-12-11 12:34:29] 2025-12-11 11:33:37,812 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-11 12:34:29] 2025-12-11 11:33:37,813 | INFO     | ***************************************
[2025-12-11 12:34:29] 2025-12-11 11:33:37,813 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-11 12:34:29] 2025-12-11 11:33:37,813 | INFO     | ***************************************
[2025-12-11 12:34:29] 2025-12-11 11:33:37,813 | INFO     | 
[2025-12-11 12:34:29] 2025-12-11 11:33:37,814 | INFO     | architecture information:
[2025-12-11 12:34:29] 2025-12-11 11:33:37,814 | INFO     | executing command: cat /etc/os-release
[2025-12-11 12:34:29] 2025-12-11 11:33:37,822 | INFO     | cat /etc/os-release:
[2025-12-11 12:34:29] NAME="CentOS Linux"
[2025-12-11 12:34:29] VERSION="7 (Core)"
[2025-12-11 12:34:29] ID="centos"
[2025-12-11 12:34:29] ID_LIKE="rhel fedora"
[2025-12-11 12:34:29] VERSION_ID="7"
[2025-12-11 12:34:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-11 12:34:29] ANSI_COLOR="0;31"
[2025-12-11 12:34:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-11 12:34:29] HOME_URL="https://www.centos.org/"
[2025-12-11 12:34:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-11 12:34:29] 
[2025-12-11 12:34:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-11 12:34:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-11 12:34:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-11 12:34:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-11 12:34:29] 
[2025-12-11 12:34:29] 2025-12-11 11:33:37,822 | INFO     | ***************************************
[2025-12-11 12:34:29] 2025-12-11 11:33:38,326 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-11 12:34:29] 2025-12-11 11:33:38,338 | INFO     | sufficient remaining disk space (285466427392 B)
[2025-12-11 12:34:29] 2025-12-11 11:33:38,338 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-11 12:34:29] 2025-12-11 11:33:38,338 | INFO     | current server update state: UPDATING_FINAL
[2025-12-11 12:34:29] 2025-12-11 11:33:38,338 | INFO     | update_server=False
[2025-12-11 12:34:29] 2025-12-11 11:33:38,338 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-11 12:34:29] 2025-12-11 11:33:38,339 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-11 12:34:29] 2025-12-11 11:33:38,339 | INFO     | aborting loop
[2025-12-11 12:34:29] 2025-12-11 11:33:38,339 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-11 12:34:29] 2025-12-11 11:33:38,339 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-11 12:34:29] 2025-12-11 11:33:38,339 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-11 12:34:29] 2025-12-11 11:33:38,339 | INFO     | found 0 job(s) in 20 queues
[2025-12-11 12:34:29] 2025-12-11 11:33:38,339 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-11 12:34:29] 2025-12-11 11:33:38,339 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-11 12:34:29] 2025-12-11 11:33:39,187 | INFO     | all data control threads have been joined
[2025-12-11 12:34:29] 2025-12-11 11:33:39,344 | INFO     | [job] job monitor thread has finished
[2025-12-11 12:34:29] 2025-12-11 11:33:39,344 | INFO     | [job] queue monitor thread has finished
[2025-12-11 12:34:29] 2025-12-11 11:33:39,344 | INFO     | [job] retrieve thread has finished
[2025-12-11 12:34:29] 2025-12-11 11:33:39,382 | INFO     | [job] create_data_payload thread has finished
[2025-12-11 12:34:29] 2025-12-11 11:33:39,526 | INFO     | all job control threads have been joined
[2025-12-11 12:34:29] 2025-12-11 11:33:39,624 | INFO     | all payload control threads have been joined
[2025-12-11 12:34:29] 2025-12-11 11:33:39,742 | INFO     | [payload] validate_post thread has finished
[2025-12-11 12:34:29] 2025-12-11 11:33:39,994 | INFO     | [payload] failed_post thread has finished
[2025-12-11 12:34:29] 2025-12-11 11:33:40,193 | INFO     | [data] control thread has finished
[2025-12-11 12:34:29] 2025-12-11 11:33:40,207 | INFO     | [data] copytool_in thread has finished
[2025-12-11 12:34:29] 2025-12-11 11:33:40,345 | INFO     | [data] copytool_out thread has finished
[2025-12-11 12:34:29] 2025-12-11 11:33:40,413 | INFO     | [payload] execute_payloads thread has finished
[2025-12-11 12:34:29] 2025-12-11 11:33:40,532 | INFO     | [job] control thread has finished
[2025-12-11 12:34:29] 2025-12-11 11:33:40,630 | INFO     | [payload] control thread has finished
[2025-12-11 12:34:29] 2025-12-11 11:33:40,710 | INFO     | [job] validate thread has finished
[2025-12-11 12:34:29] 2025-12-11 11:33:40,818 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-11 12:34:29] 2025-12-11 11:33:40,843 | INFO     | [payload] validate_pre thread has finished
[2025-12-11 12:34:29] 2025-12-11 11:33:44,825 | INFO     | [data] queue_monitor thread has finished
[2025-12-11 12:34:29] 2025-12-11 11:33:48,479 | INFO     | job.realtimelogging is not enabled
[2025-12-11 12:34:29] 2025-12-11 11:33:49,484 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-11 12:34:29] 2025-12-11 11:34:23,444 | INFO     | [monitor] cgroup control has ended
[2025-12-11 12:34:29] 2025-12-11 11:34:24,624 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140671139444544)>', '<ExcThread(monitor, started 140670337525504)>']
[2025-12-11 12:34:29] 2025-12-11 11:34:25,584 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-11 12:34:29] 2025-12-11 11:34:25,584 | INFO     | [monitor] control thread has ended
[2025-12-11 12:34:29] 2025-12-11 11:34:29,638 | INFO     | all workflow threads have been joined
[2025-12-11 12:34:29] 2025-12-11 11:34:29,638 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-11 12:34:29] 2025-12-11 11:34:29,639 | INFO     | traces error code: 0
[2025-12-11 12:34:29] 2025-12-11 11:34:29,639 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-11 12:34:29] 2025-12-11 11:34:29,692 [wrapper] ==== pilot stdout END ====
[2025-12-11 12:34:29] 2025-12-11 11:34:29,694 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-11 12:34:29] 2025-12-11 11:34:29,697 [wrapper] pilotpid: 75017
[2025-12-11 12:34:29] 2025-12-11 11:34:29,699 [wrapper] Pilot exit status: 0
[2025-12-11 12:34:29] 2025-12-11 11:34:29,706 [wrapper] pandaids: 6895365476
[2025-12-11 12:34:29] 2025-12-11 11:34:29,723 [wrapper] cleanup supervisor_pilot  132699 75018
[2025-12-11 12:34:29] 2025-12-11 11:34:29,725 [wrapper] Test setup, not cleaning
[2025-12-11 12:34:29] 2025-12-11 11:34:29,728 [wrapper] apfmon messages muted
[2025-12-11 12:34:29] 2025-12-11 11:34:29,730 [wrapper] ==== wrapper stdout END ====
[2025-12-11 12:34:29] 2025-12-11 11:34:29,732 [wrapper] ==== wrapper stderr END ====
[2025-12-11 12:34:29]  *** Error codes and diagnostics ***
[2025-12-11 12:34:29]     "exeErrorCode": 0,
[2025-12-11 12:34:29]     "exeErrorDiag": "",
[2025-12-11 12:34:29]     "pilotErrorCode": 0,
[2025-12-11 12:34:29]     "pilotErrorDiag": "",
[2025-12-11 12:34:29]  *** Listing of results directory ***
[2025-12-11 12:34:29] total 1331944
[2025-12-11 12:34:29] -rw-r--r-- 1 boinc boinc    576529 Nov 23 18:07 pilot3.tar.gz
[2025-12-11 12:34:29] -rw-r--r-- 1 boinc boinc      5112 Nov 23 18:09 queuedata.json
[2025-12-11 12:34:29] -rwx------ 1 boinc boinc     36292 Nov 23 18:11 runpilot2-wrapper.sh
[2025-12-11 12:34:29] -rw-r--r-- 1 boinc boinc       100 Dec 11 04:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-11 12:34:29] -rwxr-xr-x 1 boinc boinc      7986 Dec 11 04:34 run_atlas
[2025-12-11 12:34:29] -rw-r--r-- 1 boinc boinc       105 Dec 11 04:34 job.xml
[2025-12-11 12:34:29] -rw-r--r-- 2 boinc boinc 411659904 Dec 11 04:34 EVNT.47483658._001178.pool.root.1
[2025-12-11 12:34:29] -rw-r--r-- 2 boinc boinc    590108 Dec 11 04:34 input.tar.gz
[2025-12-11 12:34:29] -rw-r--r-- 2 boinc boinc     15847 Dec 11 04:34 start_atlas.sh
[2025-12-11 12:34:29] drwxrwx--x 2 boinc boinc      4096 Dec 11 04:34 shared
[2025-12-11 12:34:29] -rw-r--r-- 1 boinc boinc         0 Dec 11 04:34 boinc_setup_complete
[2025-12-11 12:34:29] -rw-r--r-- 1 boinc boinc      6447 Dec 11 04:34 init_data.xml
[2025-12-11 12:34:29] -rw-r--r-- 1 boinc boinc         0 Dec 11 04:34 boinc_lockfile
[2025-12-11 12:34:29] -rw-r--r-- 1 boinc boinc      2786 Dec 11 04:34 pandaJob.out
[2025-12-11 12:34:29] -rw------- 1 boinc boinc    993312 Dec 11 04:34 agis_schedconf.cvmfs.json
[2025-12-11 12:34:29] drwx------ 5 boinc boinc      4096 Dec 11 04:34 pilot3
[2025-12-11 12:34:29] -rw-r--r-- 1 boinc boinc       531 Dec 11 12:29 boinc_task_state.xml
[2025-12-11 12:34:29] -rw------- 1 boinc boinc 937938383 Dec 11 12:33 HITS.47556149._001643.pool.root.1
[2025-12-11 12:34:29] -rw------- 1 boinc boinc        95 Dec 11 12:33 pilot_heartbeat.json
[2025-12-11 12:34:29] -rw------- 1 boinc boinc      1018 Dec 11 12:33 memory_monitor_summary.json
[2025-12-11 12:34:29] -rw------- 1 boinc boinc   1516240 Dec 11 12:33 agis_ddmendpoints.agis.ALL.json
[2025-12-11 12:34:29] -rw------- 1 boinc boinc   1171603 Dec 11 12:33 log.47556149._001643.job.log.tgz.1
[2025-12-11 12:34:29] -rw------- 1 boinc boinc      8574 Dec 11 12:33 heartbeat.json
[2025-12-11 12:34:29] -rw-r--r-- 1 boinc boinc      8192 Dec 11 12:34 boinc_mmap_file
[2025-12-11 12:34:29] -rw-r--r-- 1 boinc boinc        28 Dec 11 12:34 wrapper_checkpoint.txt
[2025-12-11 12:34:29] -rw------- 1 boinc boinc      4628 Dec 11 12:34 pilotlog.txt
[2025-12-11 12:34:29] -rw------- 1 boinc boinc   4029267 Dec 11 12:34 log.47556149._001643.job.log.1
[2025-12-11 12:34:29] -rw------- 1 boinc boinc       353 Dec 11 12:34 output.list
[2025-12-11 12:34:29] -rw-r--r-- 1 boinc boinc       620 Dec 11 12:34 runtime_log
[2025-12-11 12:34:29] -rw------- 1 boinc boinc   5222400 Dec 11 12:34 result.tar.gz
[2025-12-11 12:34:29] -rw-r--r-- 1 boinc boinc      8918 Dec 11 12:34 runtime_log.err
[2025-12-11 12:34:29] -rw------- 1 boinc boinc       669 Dec 11 12:34 Vf5MDmhnSh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmieIKDm3gVfNo.diag
[2025-12-11 12:34:29] -rw-r--r-- 1 boinc boinc     12349 Dec 11 12:34 stderr.txt
[2025-12-11 12:34:29] HITS file was successfully produced:
[2025-12-11 12:34:29] -rw------- 1 boinc boinc 937938383 Dec 11 12:33 shared/HITS.pool.root.1
[2025-12-11 12:34:29]  *** Contents of shared directory: ***
[2025-12-11 12:34:29] total 1323672
[2025-12-11 12:34:29] -rw-r--r-- 2 boinc boinc 411659904 Dec 11 04:34 ATLAS.root_0
[2025-12-11 12:34:29] -rw-r--r-- 2 boinc boinc    590108 Dec 11 04:34 input.tar.gz
[2025-12-11 12:34:29] -rw-r--r-- 2 boinc boinc     15847 Dec 11 04:34 start_atlas.sh
[2025-12-11 12:34:29] -rw------- 1 boinc boinc 937938383 Dec 11 12:33 HITS.pool.root.1
[2025-12-11 12:34:29] -rw------- 1 boinc boinc   5222400 Dec 11 12:34 result.tar.gz
12:34:31 (70750): run_atlas exited; CPU time 84708.417430
12:34:31 (70750): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN