Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
06:56:05 (1450103): wrapper (7.7.26015): starting
06:56:05 (1450103): wrapper: running run_atlas (--nthreads 4)
[2025-12-11 06:56:05] Arguments: --nthreads 4
[2025-12-11 06:56:05] Threads: 4
[2025-12-11 06:56:05] Checking for CVMFS
[2025-12-11 06:56:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-11 06:56:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-11 06:56:05] Running cvmfs_config stat atlas.cern.ch
[2025-12-11 06:56:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-11 06:56:05] 2.13.2.0 698859 30245 65364 153884 2 76 2958973 4096001 3239 130560 0 49110814 99.928 3394771 1031 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-11 06:56:05] CVMFS is ok
[2025-12-11 06:56:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-11 06:56:05] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-11 06:56:05] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-11 06:56:05] Further information can be found at the LHC@home message board.
[2025-12-11 06:56:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-11 06:56:05] Checking for apptainer binary...
[2025-12-11 06:56:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-11 06:56:06] Running /usr/bin/apptainer --version
[2025-12-11 06:56:06] apptainer version 1.4.3
[2025-12-11 06:56:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-11 06:56:06] Taichi-Ubuntu
[2025-12-11 06:56:06] apptainer works
[2025-12-11 06:56:06] Set ATHENA_PROC_NUMBER=4
[2025-12-11 06:56:06] Set ATHENA_CORE_NUMBER=4
[2025-12-11 06:56:06] Starting ATLAS job with PandaID=6896764223
[2025-12-11 06:56:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:08:51 (14548): wrapper (7.7.26015): starting
09:08:51 (14548): wrapper: running run_atlas (--nthreads 4)
[2025-12-11 09:08:51] Arguments: --nthreads 4
[2025-12-11 09:08:51] Threads: 4
[2025-12-11 09:08:51] This job has been restarted, cleaning up previous attempt
[2025-12-11 09:08:51] Checking for CVMFS
[2025-12-11 09:08:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-11 09:08:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-11 09:08:53] Running cvmfs_config stat atlas.cern.ch
[2025-12-11 09:08:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-11 09:08:54] 2.13.2.0 15124 0 24652 153887 3 1 2970649 4096000 0 130560 0 0 100.000 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-11 09:08:54] CVMFS is ok
[2025-12-11 09:08:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-11 09:08:54] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-11 09:08:54] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-11 09:08:54] Further information can be found at the LHC@home message board.
[2025-12-11 09:08:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-11 09:08:54] Checking for apptainer binary...
[2025-12-11 09:08:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-11 09:08:54] Running /usr/bin/apptainer --version
[2025-12-11 09:08:54] apptainer version 1.4.3
[2025-12-11 09:08:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-11 09:08:54] Taichi-Ubuntu
[2025-12-11 09:08:54] apptainer works
[2025-12-11 09:08:54] Set ATHENA_PROC_NUMBER=4
[2025-12-11 09:08:54] Set ATHENA_CORE_NUMBER=4
[2025-12-11 09:08:54] Starting ATLAS job with PandaID=6896764223
[2025-12-11 09:08:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-11 19:56:13]  *** The last 200 lines of the pilot log: ***
[2025-12-11 19:56:13] 2025-12-12 00:55:12,245 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-11 19:56:13] 2025-12-12 00:55:12,804 | INFO     | PID=34740 has CPU usage=13.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-11 19:56:13] 2025-12-12 00:55:12,804 | INFO     | .. there are 5 such processes running
[2025-12-11 19:56:13] 2025-12-12 00:55:13,738 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-11 19:56:13] 2025-12-12 00:55:13,747 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 3004.3328124999985
[2025-12-11 19:56:13] 2025-12-12 00:55:13,758 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/12/PanDA_Pilot-6896764223/memory_monitor_summary.json (trf name=prmon)
[2025-12-11 19:56:13] 2025-12-12 00:55:13,758 | INFO     | extracted standard info from prmon json
[2025-12-11 19:56:13] 2025-12-12 00:55:13,759 | INFO     | extracted standard memory fields from prmon json
[2025-12-11 19:56:13] 2025-12-12 00:55:13,759 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-11 19:56:13] 2025-12-12 00:55:13,767 | INFO     | fitting pss+swap vs Time
[2025-12-11 19:56:13] 2025-12-12 00:55:13,767 | INFO     | sum of square deviations: 79395981670.0
[2025-12-11 19:56:13] 2025-12-12 00:55:13,774 | INFO     | sum of deviations: 382420414258.99994
[2025-12-11 19:56:13] 2025-12-12 00:55:13,775 | INFO     | mean x: 1765481518.0
[2025-12-11 19:56:13] 2025-12-12 00:55:13,775 | INFO     | mean y: 2673627.8708661417
[2025-12-11 19:56:13] 2025-12-12 00:55:13,775 | INFO     | intersect: -8500983097.306673
[2025-12-11 19:56:13] 2025-12-12 00:55:13,776 | INFO     | chi2: 4.880398103834467
[2025-12-11 19:56:13] 2025-12-12 00:55:13,777 | INFO     | sum of square deviations: 77535211897.5
[2025-12-11 19:56:13] 2025-12-12 00:55:13,785 | INFO     | sum of deviations: 547806997166.5
[2025-12-11 19:56:13] 2025-12-12 00:55:13,785 | INFO     | mean x: 1765481365.5
[2025-12-11 19:56:13] 2025-12-12 00:55:13,785 | INFO     | mean y: 2687171.080952381
[2025-12-11 19:56:13] 2025-12-12 00:55:13,785 | INFO     | intersect: -12470910588.173397
[2025-12-11 19:56:13] 2025-12-12 00:55:13,786 | INFO     | chi2: 2.3587181680058382
[2025-12-11 19:56:13] 2025-12-12 00:55:13,786 | INFO     | current chi2=2.3587181680058382 (change=51.66955404411326 %)
[2025-12-11 19:56:13] 2025-12-12 00:55:13,787 | INFO     | sum of square deviations: 75703745000.0
[2025-12-11 19:56:13] 2025-12-12 00:55:13,791 | INFO     | sum of deviations: 539831249698.0
[2025-12-11 19:56:13] 2025-12-12 00:55:13,791 | INFO     | mean x: 1765481213.0
[2025-12-11 19:56:13] 2025-12-12 00:55:13,791 | INFO     | mean y: 2686506.9904
[2025-12-11 19:56:13] 2025-12-12 00:55:13,791 | INFO     | intersect: -12586676536.173857
[2025-12-11 19:56:13] 2025-12-12 00:55:13,792 | INFO     | chi2: 2.358099583810354
[2025-12-11 19:56:13] 2025-12-12 00:55:13,792 | INFO     | current chi2=2.358099583810354 (change=0.02622543904883707 %)
[2025-12-11 19:56:13] 2025-12-12 00:55:13,792 | INFO     | right removable region: 624
[2025-12-11 19:56:13] 2025-12-12 00:55:13,792 | INFO     | sum of square deviations: 77535211897.5
[2025-12-11 19:56:13] 2025-12-12 00:55:13,797 | INFO     | sum of deviations: 226667618752.49976
[2025-12-11 19:56:13] 2025-12-12 00:55:13,797 | INFO     | mean x: 1765481670.5
[2025-12-11 19:56:13] 2025-12-12 00:55:13,797 | INFO     | mean y: 2686363.338095238
[2025-12-11 19:56:13] 2025-12-12 00:55:13,797 | INFO     | intersect: -5158549627.510128
[2025-12-11 19:56:13] 2025-12-12 00:55:13,797 | INFO     | chi2: 2.6199082754989482
[2025-12-11 19:56:13] 2025-12-12 00:55:13,797 | INFO     | current chi2=2.6199082754989482 (change=46.317734337276306 %)
[2025-12-11 19:56:13] 2025-12-12 00:55:13,798 | INFO     | sum of square deviations: 75703745000.0
[2025-12-11 19:56:13] 2025-12-12 00:55:13,803 | INFO     | sum of deviations: 205930015533.99982
[2025-12-11 19:56:13] 2025-12-12 00:55:13,803 | INFO     | mean x: 1765481823.0
[2025-12-11 19:56:13] 2025-12-12 00:55:13,803 | INFO     | mean y: 2688089.9168
[2025-12-11 19:56:13] 2025-12-12 00:55:13,803 | INFO     | intersect: -4799791618.786968
[2025-12-11 19:56:13] 2025-12-12 00:55:13,803 | INFO     | chi2: 2.6049841504599582
[2025-12-11 19:56:13] 2025-12-12 00:55:13,803 | INFO     | current chi2=2.6049841504599582 (change=0.5696430359245216 %)
[2025-12-11 19:56:13] 2025-12-12 00:55:13,804 | INFO     | left removable region: 20
[2025-12-11 19:56:13] 2025-12-12 00:55:13,804 | INFO     | sum of square deviations: 68326322955.0
[2025-12-11 19:56:13] 2025-12-12 00:55:13,809 | INFO     | sum of deviations: 324924667656.00006
[2025-12-11 19:56:13] 2025-12-12 00:55:13,809 | INFO     | mean x: 1765481792.5
[2025-12-11 19:56:13] 2025-12-12 00:55:13,809 | INFO     | mean y: 2704601.450331126
[2025-12-11 19:56:13] 2025-12-12 00:55:13,809 | INFO     | intersect: -8393014059.695668
[2025-12-11 19:56:13] 2025-12-12 00:55:13,809 | INFO     | chi2: 0.037686909698705424
[2025-12-11 19:56:13] 2025-12-12 00:55:13,810 | INFO     | current memory leak: 4.76 B/s (using 604 data points, chi2=0.04)
[2025-12-11 19:56:13] 2025-12-12 00:55:13,810 | INFO     | time since job start (38764s) is within the limit (174528.0s)
[2025-12-11 19:56:13] 2025-12-12 00:55:13,810 | INFO     | could have reported an average CPU frequency of 3215 MHz (25 samples)
[2025-12-11 19:56:13] 2025-12-12 00:55:13,811 | INFO     | ..............................
[2025-12-11 19:56:13] 2025-12-12 00:55:13,811 | INFO     | . Timing measurements:
[2025-12-11 19:56:13] 2025-12-12 00:55:13,811 | INFO     | . get job = 0 s
[2025-12-11 19:56:13] 2025-12-12 00:55:13,811 | INFO     | . initial setup = 1 s
[2025-12-11 19:56:13] 2025-12-12 00:55:13,811 | INFO     | . payload setup = 11 s
[2025-12-11 19:56:13] 2025-12-12 00:55:13,811 | INFO     | . stage-in = 0 s
[2025-12-11 19:56:13] 2025-12-12 00:55:13,811 | INFO     | . payload execution = 38722 s
[2025-12-11 19:56:13] 2025-12-12 00:55:13,811 | INFO     | . stage-out = 4 s
[2025-12-11 19:56:13] 2025-12-12 00:55:13,811 | INFO     | . log creation = 0 s
[2025-12-11 19:56:13] 2025-12-12 00:55:13,811 | INFO     | ..............................
[2025-12-11 19:56:13] 2025-12-12 00:55:14,353 | INFO     | 
[2025-12-11 19:56:13] 2025-12-12 00:55:14,353 | INFO     | job summary report
[2025-12-11 19:56:13] 2025-12-12 00:55:14,353 | INFO     | --------------------------------------------------
[2025-12-11 19:56:13] 2025-12-12 00:55:14,353 | INFO     | PanDA job id: 6896764223
[2025-12-11 19:56:13] 2025-12-12 00:55:14,354 | INFO     | task id: 47530783
[2025-12-11 19:56:13] 2025-12-12 00:55:14,354 | INFO     | errors: (none)
[2025-12-11 19:56:13] 2025-12-12 00:55:14,354 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-11 19:56:13] 2025-12-12 00:55:14,354 | INFO     | pilot state: finished 
[2025-12-11 19:56:13] 2025-12-12 00:55:14,354 | INFO     | transexitcode: 0
[2025-12-11 19:56:13] 2025-12-12 00:55:14,354 | INFO     | exeerrorcode: 0
[2025-12-11 19:56:13] 2025-12-12 00:55:14,354 | INFO     | exeerrordiag: 
[2025-12-11 19:56:13] 2025-12-12 00:55:14,354 | INFO     | exitcode: 0
[2025-12-11 19:56:13] 2025-12-12 00:55:14,354 | INFO     | exitmsg: OK
[2025-12-11 19:56:13] 2025-12-12 00:55:14,355 | INFO     | cpuconsumptiontime: 153879 s
[2025-12-11 19:56:13] 2025-12-12 00:55:14,355 | INFO     | nevents: 1000
[2025-12-11 19:56:13] 2025-12-12 00:55:14,355 | INFO     | neventsw: 0
[2025-12-11 19:56:13] 2025-12-12 00:55:14,355 | INFO     | pid: 80082
[2025-12-11 19:56:13] 2025-12-12 00:55:14,355 | INFO     | pgrp: 80082
[2025-12-11 19:56:13] 2025-12-12 00:55:14,355 | INFO     | corecount: 4
[2025-12-11 19:56:13] 2025-12-12 00:55:14,355 | INFO     | event service: False
[2025-12-11 19:56:13] 2025-12-12 00:55:14,355 | INFO     | sizes: {0: 2284439, 1: 2284638, 5: 2284900, 11: 2284956, 38736: 2347454, 38737: 2347453, 38741: 2356717, 38748: 2356971}
[2025-12-11 19:56:13] 2025-12-12 00:55:14,356 | INFO     | --------------------------------------------------
[2025-12-11 19:56:13] 2025-12-12 00:55:14,356 | INFO     | 
[2025-12-11 19:56:13] 2025-12-12 00:55:14,356 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/12
[2025-12-11 19:56:13] 2025-12-12 00:55:14,386 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-11 19:56:13] 2025-12-12 00:55:14,386 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-11 19:56:13] 2025-12-12 00:55:14,386 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-11 19:56:13] 2025-12-12 00:55:14,387 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-11 19:56:13] 2025-12-12 00:55:14,387 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-11 19:56:13] 2025-12-12 00:55:14,387 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-11 19:56:13] 2025-12-12 00:55:14,387 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-11 19:56:13] 2025-12-12 00:55:14,387 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-11 19:56:13] 2025-12-12 00:55:14,387 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-11 19:56:13] 2025-12-12 00:55:14,387 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-11 19:56:13] 2025-12-12 00:55:14,387 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-11 19:56:13] 2025-12-12 00:55:14,387 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-11 19:56:13] 2025-12-12 00:55:14,387 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-11 19:56:13] 2025-12-12 00:55:14,388 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-11 19:56:13] 2025-12-12 00:55:14,388 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-11 19:56:13] 2025-12-12 00:55:14,388 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-11 19:56:13] 2025-12-12 00:55:14,388 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-11 19:56:13] 2025-12-12 00:55:14,388 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-11 19:56:13] 2025-12-12 00:55:14,388 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-11 19:56:13] 2025-12-12 00:55:14,388 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-11 19:56:13] 2025-12-12 00:55:14,388 | INFO     | job 6896764223 has completed (purged errors)
[2025-12-11 19:56:13] 2025-12-12 00:55:14,388 | INFO     | overall cleanup function is called
[2025-12-11 19:56:13] 2025-12-12 00:55:15,407 | INFO     | --- collectZombieJob: --- 10, [80082]
[2025-12-11 19:56:13] 2025-12-12 00:55:15,408 | INFO     | zombie collector waiting for pid 80082
[2025-12-11 19:56:13] 2025-12-12 00:55:15,408 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-11 19:56:13] 2025-12-12 00:55:15,408 | INFO     | collected zombie processes
[2025-12-11 19:56:13] 2025-12-12 00:55:15,408 | INFO     | will attempt to kill all subprocesses of pid=80082
[2025-12-11 19:56:13] 2025-12-12 00:55:15,664 | INFO     | process IDs to be killed: [80082] (in reverse order)
[2025-12-11 19:56:13] 2025-12-12 00:55:15,742 | WARNING  | found no corresponding commands to process id(s)
[2025-12-11 19:56:13] 2025-12-12 00:55:15,742 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-11 19:56:13] 2025-12-12 00:55:15,752 | INFO     | did not find any defunct processes belonging to 80082
[2025-12-11 19:56:13] 2025-12-12 00:55:15,761 | INFO     | did not find any defunct processes belonging to 80082
[2025-12-11 19:56:13] 2025-12-12 00:55:15,761 | INFO     | ready for new job
[2025-12-11 19:56:13] 2025-12-12 00:55:15,761 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-11 19:56:13] 2025-12-12 00:55:15,765 | INFO     | ***************************************
[2025-12-11 19:56:13] 2025-12-12 00:55:15,765 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-11 19:56:13] 2025-12-12 00:55:15,765 | INFO     | ***************************************
[2025-12-11 19:56:13] 2025-12-12 00:55:15,765 | INFO     | 
[2025-12-11 19:56:13] 2025-12-12 00:55:15,768 | INFO     | architecture information:
[2025-12-11 19:56:13] 2025-12-12 00:55:15,768 | INFO     | executing command: cat /etc/os-release
[2025-12-11 19:56:13] 2025-12-12 00:55:15,788 | INFO     | cat /etc/os-release:
[2025-12-11 19:56:13] NAME="CentOS Linux"
[2025-12-11 19:56:13] VERSION="7 (Core)"
[2025-12-11 19:56:13] ID="centos"
[2025-12-11 19:56:13] ID_LIKE="rhel fedora"
[2025-12-11 19:56:13] VERSION_ID="7"
[2025-12-11 19:56:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-11 19:56:13] ANSI_COLOR="0;31"
[2025-12-11 19:56:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-11 19:56:13] HOME_URL="https://www.centos.org/"
[2025-12-11 19:56:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-11 19:56:13] 
[2025-12-11 19:56:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-11 19:56:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-11 19:56:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-11 19:56:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-11 19:56:13] 
[2025-12-11 19:56:13] 2025-12-12 00:55:15,788 | INFO     | ***************************************
[2025-12-11 19:56:13] 2025-12-12 00:55:16,291 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/12
[2025-12-11 19:56:13] 2025-12-12 00:55:16,315 | INFO     | sufficient remaining disk space (373130526720 B)
[2025-12-11 19:56:13] 2025-12-12 00:55:16,316 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-11 19:56:13] 2025-12-12 00:55:16,316 | INFO     | current server update state: UPDATING_FINAL
[2025-12-11 19:56:13] 2025-12-12 00:55:16,316 | INFO     | update_server=False
[2025-12-11 19:56:13] 2025-12-12 00:55:16,316 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-11 19:56:13] 2025-12-12 00:55:16,317 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-11 19:56:13] 2025-12-12 00:55:16,317 | INFO     | aborting loop
[2025-12-11 19:56:13] 2025-12-12 00:55:16,882 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-11 19:56:13] 2025-12-12 00:55:16,990 | INFO     | all job control threads have been joined
[2025-12-11 19:56:13] 2025-12-12 00:55:17,020 | INFO     | all payload control threads have been joined
[2025-12-11 19:56:13] 2025-12-12 00:55:17,172 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-11 19:56:13] 2025-12-12 00:55:17,317 | INFO     | all data control threads have been joined
[2025-12-11 19:56:13] 2025-12-12 00:55:17,321 | INFO     | [job] retrieve thread has finished
[2025-12-11 19:56:13] 2025-12-12 00:55:17,323 | INFO     | [job] job monitor thread has finished
[2025-12-11 19:56:13] 2025-12-12 00:55:17,401 | INFO     | [data] copytool_in thread has finished
[2025-12-11 19:56:13] 2025-12-12 00:55:17,493 | INFO     | [payload] validate_pre thread has finished
[2025-12-11 19:56:13] 2025-12-12 00:55:17,691 | INFO     | [payload] validate_post thread has finished
[2025-12-11 19:56:13] 2025-12-12 00:55:17,834 | INFO     | [payload] execute_payloads thread has finished
[2025-12-11 19:56:13] 2025-12-12 00:55:17,995 | INFO     | [job] control thread has finished
[2025-12-11 19:56:13] 2025-12-12 00:55:18,026 | INFO     | [payload] control thread has finished
[2025-12-11 19:56:13] 2025-12-12 00:55:18,320 | INFO     | [job] validate thread has finished
[2025-12-11 19:56:13] 2025-12-12 00:55:18,323 | INFO     | [data] control thread has finished
[2025-12-11 19:56:13] 2025-12-12 00:55:18,493 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-11 19:56:13] 2025-12-12 00:55:18,667 | INFO     | [job] create_data_payload thread has finished
[2025-12-11 19:56:13] 2025-12-12 00:55:18,701 | INFO     | [payload] failed_post thread has finished
[2025-12-11 19:56:13] 2025-12-12 00:55:18,884 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-11 19:56:13] 2025-12-12 00:55:18,888 | INFO     | [data] copytool_out thread has finished
[2025-12-11 19:56:13] 2025-12-12 00:55:19,890 | INFO     | [job] queue monitor thread has finished
[2025-12-11 19:56:13] 2025-12-12 00:55:21,179 | INFO     | [data] queue_monitor thread has finished
[2025-12-11 19:56:13] 2025-12-12 00:55:47,147 | INFO     | PID=34740 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-11 19:56:13] 2025-12-12 00:55:47,147 | INFO     | .. there are 5 such processes running
[2025-12-11 19:56:13] 2025-12-12 00:55:47,148 | INFO     | found 0 job(s) in 20 queues
[2025-12-11 19:56:13] 2025-12-12 00:55:47,148 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-11 19:56:13] 2025-12-12 00:55:47,148 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-11 19:56:13] 2025-12-12 00:56:06,834 | INFO     | [monitor] cgroup control has ended
[2025-12-11 19:56:13] 2025-12-12 00:56:07,689 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131408156440384)>', '<ExcThread(monitor, started 131407544317696)>']
[2025-12-11 19:56:13] 2025-12-12 00:56:08,252 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-11 19:56:13] 2025-12-12 00:56:08,253 | INFO     | [monitor] control thread has ended
[2025-12-11 19:56:13] 2025-12-12 00:56:12,713 | INFO     | all workflow threads have been joined
[2025-12-11 19:56:13] 2025-12-12 00:56:12,714 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-11 19:56:13] 2025-12-12 00:56:12,714 | INFO     | traces error code: 0
[2025-12-11 19:56:13] 2025-12-12 00:56:12,714 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-11 19:56:13] 2025-12-12 00:56:12,863 [wrapper] ==== pilot stdout END ====
[2025-12-11 19:56:13] 2025-12-12 00:56:12,866 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-11 19:56:13] 2025-12-12 00:56:12,869 [wrapper] pilotpid: 34740
[2025-12-11 19:56:13] 2025-12-12 00:56:12,873 [wrapper] Pilot exit status: 0
[2025-12-11 19:56:13] 2025-12-12 00:56:12,884 [wrapper] pandaids: 6896764223 6896764223
[2025-12-11 19:56:13] 2025-12-12 00:56:12,955 [wrapper] cleanup supervisor_pilot  512329 34744
[2025-12-11 19:56:13] 2025-12-12 00:56:12,958 [wrapper] Test setup, not cleaning
[2025-12-11 19:56:13] 2025-12-12 00:56:12,961 [wrapper] apfmon messages muted
[2025-12-11 19:56:13] 2025-12-12 00:56:12,963 [wrapper] ==== wrapper stdout END ====
[2025-12-11 19:56:13] 2025-12-12 00:56:12,965 [wrapper] ==== wrapper stderr END ====
[2025-12-11 19:56:13]  *** Error codes and diagnostics ***
[2025-12-11 19:56:13]     "exeErrorCode": 0,
[2025-12-11 19:56:13]     "exeErrorDiag": "",
[2025-12-11 19:56:13]     "pilotErrorCode": 0,
[2025-12-11 19:56:13]     "pilotErrorDiag": "",
[2025-12-11 19:56:13]  *** Listing of results directory ***
[2025-12-11 19:56:13] total 1449676
[2025-12-11 19:56:13] drwx------ 5 whitlerd whitlerd      4096 Dec  3 09:30 pilot3
[2025-12-11 19:56:13] -rw-r--r-- 1 whitlerd whitlerd    579449 Dec  8 03:53 pilot3.tar.gz
[2025-12-11 19:56:13] -rwx------ 1 whitlerd whitlerd     36292 Dec  8 04:37 runpilot2-wrapper.sh
[2025-12-11 19:56:13] -rw-r--r-- 1 whitlerd whitlerd      5112 Dec  8 04:37 queuedata.json
[2025-12-11 19:56:13] -rw-rw-r-- 1 whitlerd whitlerd       100 Dec 11 06:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-11 19:56:13] -rwxr-xr-x 1 whitlerd whitlerd      7986 Dec 11 06:56 run_atlas
[2025-12-11 19:56:13] -rw-rw-r-- 1 whitlerd whitlerd       105 Dec 11 06:56 job.xml
[2025-12-11 19:56:13] -rw-r--r-- 3 whitlerd whitlerd 377704352 Dec 11 06:56 EVNT.47530775._000001.pool.root.1
[2025-12-11 19:56:13] -rw-r--r-- 3 whitlerd whitlerd 377704352 Dec 11 06:56 ATLAS.root_0
[2025-12-11 19:56:13] -rw-r--r-- 2 whitlerd whitlerd     15847 Dec 11 06:56 start_atlas.sh
[2025-12-11 19:56:13] drwxrwx--x 2 whitlerd whitlerd      4096 Dec 11 06:56 shared
[2025-12-11 19:56:13] -rw-r--r-- 2 whitlerd whitlerd    592587 Dec 11 06:56 input.tar.gz
[2025-12-11 19:56:13] -rw-rw-r-- 1 whitlerd whitlerd         0 Dec 11 06:56 boinc_setup_complete
[2025-12-11 19:56:13] -rw-rw-r-- 1 whitlerd whitlerd         0 Dec 11 06:56 boinc_lockfile
[2025-12-11 19:56:13] -rw-rw-r-- 1 whitlerd whitlerd      9355 Dec 11 09:08 init_data.xml
[2025-12-11 19:56:13] -rw-rw-r-- 1 whitlerd whitlerd      2875 Dec 11 09:08 pandaJob.out
[2025-12-11 19:56:13] -rw------- 1 whitlerd whitlerd    988866 Dec 11 09:09 agis_schedconf.cvmfs.json
[2025-12-11 19:56:13] -rw-rw-r-- 1 whitlerd whitlerd       533 Dec 11 19:49 boinc_task_state.xml
[2025-12-11 19:56:13] -rw------- 1 whitlerd whitlerd 710964737 Dec 11 19:54 HITS.47530783._000007.pool.root.1
[2025-12-11 19:56:13] -rw------- 1 whitlerd whitlerd      1057 Dec 11 19:54 memory_monitor_summary.json
[2025-12-11 19:56:13] -rw------- 1 whitlerd whitlerd   1516240 Dec 11 19:55 agis_ddmendpoints.agis.ALL.json
[2025-12-11 19:56:13] -rw------- 1 whitlerd whitlerd   1544943 Dec 11 19:55 log.47530783._000007.job.log.tgz.1
[2025-12-11 19:56:13] -rw------- 1 whitlerd whitlerd     28271 Dec 11 19:55 heartbeat.json
[2025-12-11 19:56:13] -rw------- 1 whitlerd whitlerd        96 Dec 11 19:55 pilot_heartbeat.json
[2025-12-11 19:56:13] -rw-rw-r-- 1 whitlerd whitlerd      8192 Dec 11 19:56 boinc_mmap_file
[2025-12-11 19:56:13] -rw-rw-r-- 1 whitlerd whitlerd        29 Dec 11 19:56 wrapper_checkpoint.txt
[2025-12-11 19:56:13] -rw------- 1 whitlerd whitlerd      4837 Dec 11 19:56 pilotlog.txt
[2025-12-11 19:56:13] -rw------- 1 whitlerd whitlerd   5518103 Dec 11 19:56 log.47530783._000007.job.log.1
[2025-12-11 19:56:13] -rw------- 1 whitlerd whitlerd       353 Dec 11 19:56 output.list
[2025-12-11 19:56:13] -rw-rw-r-- 1 whitlerd whitlerd       620 Dec 11 19:56 runtime_log
[2025-12-11 19:56:13] -rw------- 1 whitlerd whitlerd   7106560 Dec 11 19:56 result.tar.gz
[2025-12-11 19:56:13] -rw-rw-r-- 1 whitlerd whitlerd      9127 Dec 11 19:56 runtime_log.err
[2025-12-11 19:56:13] -rw------- 1 whitlerd whitlerd       785 Dec 11 19:56 0iUNDmNrmm8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyGQKDmUUm20n.diag
[2025-12-11 19:56:13] -rw-rw-r-- 1 whitlerd whitlerd     23537 Dec 11 19:56 stderr.txt
[2025-12-11 19:56:13] HITS file was successfully produced:
[2025-12-11 19:56:13] -rw------- 1 whitlerd whitlerd 710964737 Dec 11 19:54 shared/HITS.pool.root.1
[2025-12-11 19:56:13]  *** Contents of shared directory: ***
[2025-12-11 19:56:13] total 1070700
[2025-12-11 19:56:13] -rw-r--r-- 3 whitlerd whitlerd 377704352 Dec 11 06:56 ATLAS.root_0
[2025-12-11 19:56:13] -rw-r--r-- 2 whitlerd whitlerd     15847 Dec 11 06:56 start_atlas.sh
[2025-12-11 19:56:13] -rw-r--r-- 2 whitlerd whitlerd    592587 Dec 11 06:56 input.tar.gz
[2025-12-11 19:56:13] -rw------- 1 whitlerd whitlerd 710964737 Dec 11 19:54 HITS.pool.root.1
[2025-12-11 19:56:13] -rw------- 1 whitlerd whitlerd   7106560 Dec 11 19:56 result.tar.gz
19:56:14 (14548): run_atlas exited; CPU time 154060.065438
19:56:14 (14548): called boinc_finish(0)

</stderr_txt>
]]>

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