Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:25:16 (31148): wrapper (7.7.26015): starting
11:25:16 (31148): wrapper: running run_atlas (--nthreads 12)
[2025-12-10 11:25:16] Arguments: --nthreads 12
[2025-12-10 11:25:16] Threads: 12
[2025-12-10 11:25:16] Checking for CVMFS
[2025-12-10 11:25:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-10 11:25:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-10 11:25:16] Running cvmfs_config stat atlas.cern.ch
[2025-12-10 11:25:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-10 11:25:16] 2.11.2.0 2998 123792 106372 153847 0 1 19031817 20275200 1 130560 0 51376889 99.957 5394015 36589 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-10 11:25:16] CVMFS is ok
[2025-12-10 11:25:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-10 11:25:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-10 11:25:16] Further information can be found at the LHC@home message board.
[2025-12-10 11:25:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-10 11:25:16] Checking for apptainer binary...
[2025-12-10 11:25:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-10 11:25:16] Running /usr/bin/apptainer --version
[2025-12-10 11:25:16] apptainer version 1.3.2-1.el7
[2025-12-10 11:25:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-10 11:25:18] c-205-12.aglt2.org
[2025-12-10 11:25:18] apptainer works
[2025-12-10 11:25:18] Set ATHENA_PROC_NUMBER=12
[2025-12-10 11:25:18] Set ATHENA_CORE_NUMBER=12
[2025-12-10 11:25:18] Starting ATLAS job with PandaID=6905333462
[2025-12-10 11:25:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-10 17:34:33]  *** The last 200 lines of the pilot log: ***
[2025-12-10 17:34:33] 2025-12-10 22:33:59,658 | INFO     | monitor loop #1661: job 0:6905333462 is in state 'finished'
[2025-12-10 17:34:33] 2025-12-10 22:33:59,659 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-10 17:34:33] 2025-12-10 22:34:00,413 | INFO     | time since job start (22106s) is within the limit (172800.0s)
[2025-12-10 17:34:33] 2025-12-10 22:34:00,988 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-10 17:34:33] 2025-12-10 22:34:00,991 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-12-10 17:34:33] 2025-12-10 22:34:00,994 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6905333462/memory_monitor_summary.json (trf name=prmon)
[2025-12-10 17:34:33] 2025-12-10 22:34:00,995 | INFO     | extracted standard info from prmon json
[2025-12-10 17:34:33] 2025-12-10 22:34:00,995 | INFO     | extracted standard memory fields from prmon json
[2025-12-10 17:34:33] 2025-12-10 22:34:00,995 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-10 17:34:33] 2025-12-10 22:34:01,002 | INFO     | fitting pss+swap vs Time
[2025-12-10 17:34:33] 2025-12-10 22:34:01,003 | INFO     | sum of square deviations: 14709529562.63263
[2025-12-10 17:34:33] 2025-12-10 22:34:01,006 | INFO     | sum of deviations: 329358068738.72375
[2025-12-10 17:34:33] 2025-12-10 22:34:01,006 | INFO     | mean x: 1765394980.5718231
[2025-12-10 17:34:33] 2025-12-10 22:34:01,006 | INFO     | mean y: 4044400.9337016577
[2025-12-10 17:34:33] 2025-12-10 22:34:01,006 | INFO     | intersect: -39524553633.856766
[2025-12-10 17:34:33] 2025-12-10 22:34:01,007 | INFO     | chi2: 5.200688029902697
[2025-12-10 17:34:33] 2025-12-10 22:34:01,007 | INFO     | sum of square deviations: 14108400640.106522
[2025-12-10 17:34:33] 2025-12-10 22:34:01,010 | INFO     | sum of deviations: 475084452803.3754
[2025-12-10 17:34:33] 2025-12-10 22:34:01,010 | INFO     | mean x: 1765394828.0728292
[2025-12-10 17:34:33] 2025-12-10 22:34:01,010 | INFO     | mean y: 4081301.6778711486
[2025-12-10 17:34:33] 2025-12-10 22:34:01,010 | INFO     | intersect: -59443595105.571976
[2025-12-10 17:34:33] 2025-12-10 22:34:01,011 | INFO     | chi2: 2.739456125217548
[2025-12-10 17:34:33] 2025-12-10 22:34:01,011 | INFO     | current chi2=2.739456125217548 (change=47.3251210327107 %)
[2025-12-10 17:34:33] 2025-12-10 22:34:01,011 | INFO     | sum of square deviations: 13523876680.079575
[2025-12-10 17:34:33] 2025-12-10 22:34:01,014 | INFO     | sum of deviations: 479476993011.4147
[2025-12-10 17:34:33] 2025-12-10 22:34:01,014 | INFO     | mean x: 1765394675.5738637
[2025-12-10 17:34:33] 2025-12-10 22:34:01,014 | INFO     | mean y: 4082405.8494318184
[2025-12-10 17:34:33] 2025-12-10 22:34:01,014 | INFO     | intersect: -62586412209.45177
[2025-12-10 17:34:33] 2025-12-10 22:34:01,015 | INFO     | chi2: 2.6550085180327
[2025-12-10 17:34:33] 2025-12-10 22:34:01,015 | INFO     | current chi2=2.6550085180327 (change=3.0826413464877778 %)
[2025-12-10 17:34:33] 2025-12-10 22:34:01,015 | INFO     | right removable region: 351
[2025-12-10 17:34:33] 2025-12-10 22:34:01,015 | INFO     | sum of square deviations: 14108384780.106522
[2025-12-10 17:34:33] 2025-12-10 22:34:01,018 | INFO     | sum of deviations: 179450672555.9159
[2025-12-10 17:34:33] 2025-12-10 22:34:01,018 | INFO     | mean x: 1765395133.0728292
[2025-12-10 17:34:33] 2025-12-10 22:34:01,018 | INFO     | mean y: 4082317.31092437
[2025-12-10 17:34:33] 2025-12-10 22:34:01,019 | INFO     | intersect: -22450744999.5315
[2025-12-10 17:34:33] 2025-12-10 22:34:01,019 | INFO     | chi2: 2.663000484415086
[2025-12-10 17:34:33] 2025-12-10 22:34:01,019 | INFO     | current chi2=2.663000484415086 (change=48.79522730255154 %)
[2025-12-10 17:34:33] 2025-12-10 22:34:01,020 | INFO     | sum of square deviations: 13523844960.079576
[2025-12-10 17:34:33] 2025-12-10 22:34:01,022 | INFO     | sum of deviations: 148821074490.46027
[2025-12-10 17:34:33] 2025-12-10 22:34:01,022 | INFO     | mean x: 1765395285.5738637
[2025-12-10 17:34:33] 2025-12-10 22:34:01,023 | INFO     | mean y: 4090296.4630681816
[2025-12-10 17:34:33] 2025-12-10 22:34:01,023 | INFO     | intersect: -19422930944.539787
[2025-12-10 17:34:33] 2025-12-10 22:34:01,023 | INFO     | chi2: 2.6132771435469357
[2025-12-10 17:34:33] 2025-12-10 22:34:01,023 | INFO     | current chi2=2.6132771435469357 (change=1.8671923328272246 %)
[2025-12-10 17:34:33] 2025-12-10 22:34:01,023 | INFO     | left removable region: 20
[2025-12-10 17:34:33] 2025-12-10 22:34:01,024 | INFO     | sum of square deviations: 11244911433.111845
[2025-12-10 17:34:33] 2025-12-10 22:34:01,026 | INFO     | sum of deviations: 264235069730.3292
[2025-12-10 17:34:33] 2025-12-10 22:34:01,026 | INFO     | mean x: 1765395255.0755286
[2025-12-10 17:34:33] 2025-12-10 22:34:01,026 | INFO     | mean y: 4139897.5468277945
[2025-12-10 17:34:33] 2025-12-10 22:34:01,027 | INFO     | intersect: -41479453912.97232
[2025-12-10 17:34:33] 2025-12-10 22:34:01,027 | INFO     | chi2: 0.018342484742661206
[2025-12-10 17:34:33] 2025-12-10 22:34:01,027 | INFO     | current memory leak: 23.50 B/s (using 331 data points, chi2=0.02)
[2025-12-10 17:34:33] 2025-12-10 22:34:01,027 | INFO     | could have reported an average CPU frequency of 2348 MHz (16 samples)
[2025-12-10 17:34:33] 2025-12-10 22:34:01,028 | INFO     | ..............................
[2025-12-10 17:34:33] 2025-12-10 22:34:01,028 | INFO     | . Timing measurements:
[2025-12-10 17:34:33] 2025-12-10 22:34:01,028 | INFO     | . get job = 0 s
[2025-12-10 17:34:33] 2025-12-10 22:34:01,028 | INFO     | . initial setup = 2 s
[2025-12-10 17:34:33] 2025-12-10 22:34:01,028 | INFO     | . payload setup = 13 s
[2025-12-10 17:34:33] 2025-12-10 22:34:01,028 | INFO     | . stage-in = 0 s
[2025-12-10 17:34:33] 2025-12-10 22:34:01,028 | INFO     | . payload execution = 22062 s
[2025-12-10 17:34:33] 2025-12-10 22:34:01,028 | INFO     | . stage-out = 2 s
[2025-12-10 17:34:33] 2025-12-10 22:34:01,028 | INFO     | . log creation = 0 s
[2025-12-10 17:34:33] 2025-12-10 22:34:01,029 | INFO     | ..............................
[2025-12-10 17:34:33] 2025-12-10 22:34:01,112 | INFO     | 
[2025-12-10 17:34:33] 2025-12-10 22:34:01,112 | INFO     | job summary report
[2025-12-10 17:34:33] 2025-12-10 22:34:01,112 | INFO     | --------------------------------------------------
[2025-12-10 17:34:33] 2025-12-10 22:34:01,112 | INFO     | PanDA job id: 6905333462
[2025-12-10 17:34:33] 2025-12-10 22:34:01,112 | INFO     | task id: 47530725
[2025-12-10 17:34:33] 2025-12-10 22:34:01,113 | INFO     | errors: (none)
[2025-12-10 17:34:33] 2025-12-10 22:34:01,113 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-10 17:34:33] 2025-12-10 22:34:01,113 | INFO     | pilot state: finished 
[2025-12-10 17:34:33] 2025-12-10 22:34:01,113 | INFO     | transexitcode: 0
[2025-12-10 17:34:33] 2025-12-10 22:34:01,113 | INFO     | exeerrorcode: 0
[2025-12-10 17:34:33] 2025-12-10 22:34:01,113 | INFO     | exeerrordiag: 
[2025-12-10 17:34:33] 2025-12-10 22:34:01,114 | INFO     | exitcode: 0
[2025-12-10 17:34:33] 2025-12-10 22:34:01,114 | INFO     | exitmsg: OK
[2025-12-10 17:34:33] 2025-12-10 22:34:01,114 | INFO     | cpuconsumptiontime: 253709 s
[2025-12-10 17:34:33] 2025-12-10 22:34:01,114 | INFO     | nevents: 1000
[2025-12-10 17:34:33] 2025-12-10 22:34:01,114 | INFO     | neventsw: 0
[2025-12-10 17:34:33] 2025-12-10 22:34:01,114 | INFO     | pid: 9655
[2025-12-10 17:34:33] 2025-12-10 22:34:01,114 | INFO     | pgrp: 9655
[2025-12-10 17:34:33] 2025-12-10 22:34:01,115 | INFO     | corecount: 12
[2025-12-10 17:34:33] 2025-12-10 22:34:01,115 | INFO     | event service: False
[2025-12-10 17:34:33] 2025-12-10 22:34:01,115 | INFO     | sizes: {0: 2283570, 1: 2284426, 6: 2284688, 12: 2284716, 22079: 2339993, 22082: 2348987, 22083: 2349171, 22090: 2349417}
[2025-12-10 17:34:33] 2025-12-10 22:34:01,115 | INFO     | --------------------------------------------------
[2025-12-10 17:34:33] 2025-12-10 22:34:01,115 | INFO     | 
[2025-12-10 17:34:33] 2025-12-10 22:34:01,116 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-10 17:34:33] 2025-12-10 22:34:01,140 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-10 17:34:33] 2025-12-10 22:34:01,140 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-10 17:34:33] 2025-12-10 22:34:01,140 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-10 17:34:33] 2025-12-10 22:34:01,140 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-10 17:34:33] 2025-12-10 22:34:01,140 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-10 17:34:33] 2025-12-10 22:34:01,141 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-10 17:34:33] 2025-12-10 22:34:01,141 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-10 17:34:33] 2025-12-10 22:34:01,141 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-10 17:34:33] 2025-12-10 22:34:01,141 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-10 17:34:33] 2025-12-10 22:34:01,141 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-10 17:34:33] 2025-12-10 22:34:01,141 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-10 17:34:33] 2025-12-10 22:34:01,142 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-10 17:34:33] 2025-12-10 22:34:01,142 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-10 17:34:33] 2025-12-10 22:34:01,142 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-10 17:34:33] 2025-12-10 22:34:01,142 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-10 17:34:33] 2025-12-10 22:34:01,142 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-10 17:34:33] 2025-12-10 22:34:01,143 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-10 17:34:33] 2025-12-10 22:34:01,143 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-10 17:34:33] 2025-12-10 22:34:01,143 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-10 17:34:33] 2025-12-10 22:34:01,143 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-10 17:34:33] 2025-12-10 22:34:01,143 | INFO     | job 6905333462 has completed (purged errors)
[2025-12-10 17:34:33] 2025-12-10 22:34:01,144 | INFO     | overall cleanup function is called
[2025-12-10 17:34:33] 2025-12-10 22:34:02,158 | INFO     | --- collectZombieJob: --- 10, [9655]
[2025-12-10 17:34:33] 2025-12-10 22:34:02,158 | INFO     | zombie collector waiting for pid 9655
[2025-12-10 17:34:33] 2025-12-10 22:34:02,158 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-10 17:34:33] 2025-12-10 22:34:02,158 | INFO     | collected zombie processes
[2025-12-10 17:34:33] 2025-12-10 22:34:02,158 | INFO     | will attempt to kill all subprocesses of pid=9655
[2025-12-10 17:34:33] 2025-12-10 22:34:02,250 | INFO     | process IDs to be killed: [9655] (in reverse order)
[2025-12-10 17:34:33] 2025-12-10 22:34:02,303 | WARNING  | found no corresponding commands to process id(s)
[2025-12-10 17:34:33] 2025-12-10 22:34:02,303 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-10 17:34:33] 2025-12-10 22:34:02,307 | INFO     | did not find any defunct processes belonging to 9655
[2025-12-10 17:34:33] 2025-12-10 22:34:02,310 | INFO     | did not find any defunct processes belonging to 9655
[2025-12-10 17:34:33] 2025-12-10 22:34:02,312 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-10 17:34:33] 2025-12-10 22:34:02,312 | INFO     | ready for new job
[2025-12-10 17:34:33] 2025-12-10 22:34:02,312 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-10 17:34:33] 2025-12-10 22:34:02,315 | INFO     | ***************************************
[2025-12-10 17:34:33] 2025-12-10 22:34:02,315 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-10 17:34:33] 2025-12-10 22:34:02,315 | INFO     | ***************************************
[2025-12-10 17:34:33] 2025-12-10 22:34:02,315 | INFO     | 
[2025-12-10 17:34:33] 2025-12-10 22:34:02,315 | INFO     | architecture information:
[2025-12-10 17:34:33] 2025-12-10 22:34:02,316 | INFO     | executing command: cat /etc/os-release
[2025-12-10 17:34:33] 2025-12-10 22:34:02,331 | INFO     | cat /etc/os-release:
[2025-12-10 17:34:33] NAME="CentOS Linux"
[2025-12-10 17:34:33] VERSION="7 (Core)"
[2025-12-10 17:34:33] ID="centos"
[2025-12-10 17:34:33] ID_LIKE="rhel fedora"
[2025-12-10 17:34:33] VERSION_ID="7"
[2025-12-10 17:34:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-10 17:34:33] ANSI_COLOR="0;31"
[2025-12-10 17:34:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-10 17:34:33] HOME_URL="https://www.centos.org/"
[2025-12-10 17:34:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-10 17:34:33] 
[2025-12-10 17:34:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-10 17:34:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-10 17:34:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-10 17:34:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-10 17:34:33] 
[2025-12-10 17:34:33] 2025-12-10 22:34:02,332 | INFO     | ***************************************
[2025-12-10 17:34:33] 2025-12-10 22:34:02,835 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-10 17:34:33] 2025-12-10 22:34:02,852 | INFO     | sufficient remaining disk space (28517072896 B)
[2025-12-10 17:34:33] 2025-12-10 22:34:02,852 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-10 17:34:33] 2025-12-10 22:34:02,853 | INFO     | current server update state: UPDATING_FINAL
[2025-12-10 17:34:33] 2025-12-10 22:34:02,853 | INFO     | update_server=False
[2025-12-10 17:34:33] 2025-12-10 22:34:02,853 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-10 17:34:33] 2025-12-10 22:34:02,853 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-10 17:34:33] 2025-12-10 22:34:03,166 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-10 17:34:33] 2025-12-10 22:34:03,166 | INFO     | aborting loop
[2025-12-10 17:34:33] 2025-12-10 22:34:03,227 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-10 17:34:33] 2025-12-10 22:34:03,631 | INFO     | all data control threads have been joined
[2025-12-10 17:34:33] 2025-12-10 22:34:03,642 | INFO     | all job control threads have been joined
[2025-12-10 17:34:33] 2025-12-10 22:34:03,660 | INFO     | all payload control threads have been joined
[2025-12-10 17:34:33] 2025-12-10 22:34:03,858 | INFO     | [job] retrieve thread has finished
[2025-12-10 17:34:33] 2025-12-10 22:34:03,859 | INFO     | [job] queue monitor thread has finished
[2025-12-10 17:34:33] 2025-12-10 22:34:04,062 | INFO     | [job] create_data_payload thread has finished
[2025-12-10 17:34:33] 2025-12-10 22:34:04,116 | INFO     | [payload] execute_payloads thread has finished
[2025-12-10 17:34:33] 2025-12-10 22:34:04,168 | INFO     | [job] job monitor thread has finished
[2025-12-10 17:34:33] 2025-12-10 22:34:04,458 | INFO     | [job] validate thread has finished
[2025-12-10 17:34:33] 2025-12-10 22:34:04,558 | INFO     | [data] copytool_in thread has finished
[2025-12-10 17:34:33] 2025-12-10 22:34:04,561 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-10 17:34:33] 2025-12-10 22:34:04,637 | INFO     | [data] control thread has finished
[2025-12-10 17:34:33] 2025-12-10 22:34:04,647 | INFO     | [job] control thread has finished
[2025-12-10 17:34:33] 2025-12-10 22:34:04,665 | INFO     | [payload] control thread has finished
[2025-12-10 17:34:33] 2025-12-10 22:34:05,083 | INFO     | [payload] validate_post thread has finished
[2025-12-10 17:34:33] 2025-12-10 22:34:05,233 | INFO     | [data] copytool_out thread has finished
[2025-12-10 17:34:33] 2025-12-10 22:34:05,273 | INFO     | [payload] validate_pre thread has finished
[2025-12-10 17:34:33] 2025-12-10 22:34:05,362 | INFO     | [payload] failed_post thread has finished
[2025-12-10 17:34:33] 2025-12-10 22:34:08,567 | INFO     | [data] queue_monitor thread has finished
[2025-12-10 17:34:33] 2025-12-10 22:34:09,910 | INFO     | [monitor] cgroup control has ended
[2025-12-10 17:34:33] 2025-12-10 22:34:13,777 | INFO     | job.realtimelogging is not enabled
[2025-12-10 17:34:33] 2025-12-10 22:34:14,783 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-10 17:34:33] 2025-12-10 22:34:15,061 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140667867096896)>', '<ExcThread(monitor, started 140667158263552)>']
[2025-12-10 17:34:33] 2025-12-10 22:34:20,093 | INFO     | all workflow threads have been joined
[2025-12-10 17:34:33] 2025-12-10 22:34:20,093 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-10 17:34:33] 2025-12-10 22:34:20,100 | INFO     | traces error code: 0
[2025-12-10 17:34:33] 2025-12-10 22:34:20,100 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-10 17:34:33] 2025-12-10 22:34:33,596 | INFO     | PID=2535 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-10 17:34:33] 2025-12-10 22:34:33,596 | INFO     | found 0 job(s) in 20 queues
[2025-12-10 17:34:33] 2025-12-10 22:34:33,596 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-10 17:34:33] 2025-12-10 22:34:33,596 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-10 17:34:33] 2025-12-10 22:34:33,597 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-10 17:34:33] 2025-12-10 22:34:33,597 | INFO     | [monitor] control thread has ended
[2025-12-10 17:34:33] 2025-12-10 22:34:33,688 [wrapper] ==== pilot stdout END ====
[2025-12-10 17:34:33] 2025-12-10 22:34:33,692 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-10 17:34:33] 2025-12-10 22:34:33,696 [wrapper] pilotpid: 2535
[2025-12-10 17:34:33] 2025-12-10 22:34:33,700 [wrapper] Pilot exit status: 0
[2025-12-10 17:34:33] 2025-12-10 22:34:33,715 [wrapper] pandaids: 6905333462
[2025-12-10 17:34:33] 2025-12-10 22:34:33,755 [wrapper] cleanup supervisor_pilot  2310 2536
[2025-12-10 17:34:33] 2025-12-10 22:34:33,759 [wrapper] Test setup, not cleaning
[2025-12-10 17:34:33] 2025-12-10 22:34:33,764 [wrapper] apfmon messages muted
[2025-12-10 17:34:33] 2025-12-10 22:34:33,768 [wrapper] ==== wrapper stdout END ====
[2025-12-10 17:34:33] 2025-12-10 22:34:33,772 [wrapper] ==== wrapper stderr END ====
[2025-12-10 17:34:33]  *** Error codes and diagnostics ***
[2025-12-10 17:34:33]     "exeErrorCode": 0,
[2025-12-10 17:34:33]     "exeErrorDiag": "",
[2025-12-10 17:34:33]     "pilotErrorCode": 0,
[2025-12-10 17:34:33]     "pilotErrorDiag": "",
[2025-12-10 17:34:33]  *** Listing of results directory ***
[2025-12-10 17:34:33] total 1078600
[2025-12-10 17:34:33] -rw-r--r-- 1 boincer umatlas    576529 Nov 29 19:16 pilot3.tar.gz
[2025-12-10 17:34:33] -rwx------ 1 boincer umatlas     36292 Nov 29 19:18 runpilot2-wrapper.sh
[2025-12-10 17:34:33] -rw-r--r-- 1 boincer umatlas      5112 Nov 29 19:21 queuedata.json
[2025-12-10 17:34:33] -rw-r--r-- 1 boincer umatlas       100 Dec 10 11:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-10 17:34:33] -rwxr-xr-x 1 boincer umatlas      7986 Dec 10 11:25 run_atlas
[2025-12-10 17:34:33] -rw-r--r-- 1 boincer umatlas       105 Dec 10 11:25 job.xml
[2025-12-10 17:34:33] -rw-r--r-- 2 boincer umatlas 377255531 Dec 10 11:25 EVNT.47530720._000085.pool.root.1
[2025-12-10 17:34:33] -rw-r--r-- 2 boincer umatlas     15847 Dec 10 11:25 start_atlas.sh
[2025-12-10 17:34:33] drwxrwx--x 2 boincer umatlas      4096 Dec 10 11:25 shared
[2025-12-10 17:34:33] -rw-r--r-- 2 boincer umatlas    590132 Dec 10 11:25 input.tar.gz
[2025-12-10 17:34:33] -rw-r--r-- 1 boincer umatlas         0 Dec 10 11:25 boinc_lockfile
[2025-12-10 17:34:33] -rw-r--r-- 1 boincer umatlas      2877 Dec 10 11:25 pandaJob.out
[2025-12-10 17:34:33] -rw------- 1 boincer umatlas        57 Dec 10 11:25 setup.sh.local
[2025-12-10 17:34:33] -rw------- 1 boincer umatlas    992946 Dec 10 11:25 agis_schedconf.cvmfs.json
[2025-12-10 17:34:33] drwx------ 5 boincer umatlas      4096 Dec 10 11:25 pilot3
[2025-12-10 17:34:33] -rw-r--r-- 1 boincer umatlas       532 Dec 10 17:26 boinc_task_state.xml
[2025-12-10 17:34:33] -rw-r--r-- 1 boincer umatlas      5955 Dec 10 17:29 init_data.xml
[2025-12-10 17:34:33] -rw------- 1 boincer umatlas 712623246 Dec 10 17:33 HITS.47530725._002226.pool.root.1
[2025-12-10 17:34:33] -rw------- 1 boincer umatlas      1059 Dec 10 17:33 memory_monitor_summary.json
[2025-12-10 17:34:33] -rw------- 1 boincer umatlas        95 Dec 10 17:33 pilot_heartbeat.json
[2025-12-10 17:34:33] -rw------- 1 boincer umatlas   1516240 Dec 10 17:33 agis_ddmendpoints.agis.ALL.json
[2025-12-10 17:34:33] -rw------- 1 boincer umatlas   2226764 Dec 10 17:33 log.47530725._002226.job.log.tgz.1
[2025-12-10 17:34:33] -rw------- 1 boincer umatlas     28652 Dec 10 17:34 heartbeat.json
[2025-12-10 17:34:33] -rw-r--r-- 1 boincer umatlas      8192 Dec 10 17:34 boinc_mmap_file
[2025-12-10 17:34:33] -rw-r--r-- 1 boincer umatlas        29 Dec 10 17:34 wrapper_checkpoint.txt
[2025-12-10 17:34:33] -rw------- 1 boincer umatlas       744 Dec 10 17:34 pilotlog.txt
[2025-12-10 17:34:33] -rw------- 1 boincer umatlas   3097226 Dec 10 17:34 log.47530725._002226.job.log.1
[2025-12-10 17:34:33] -rw------- 1 boincer umatlas       353 Dec 10 17:34 output.list
[2025-12-10 17:34:33] -rw-r--r-- 1 boincer umatlas       620 Dec 10 17:34 runtime_log
[2025-12-10 17:34:33] -rw------- 1 boincer umatlas   5365760 Dec 10 17:34 result.tar.gz
[2025-12-10 17:34:33] -rw------- 1 boincer umatlas       670 Dec 10 17:34 SuhMDm9Jkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSKPKDmhK4Xkn.diag
[2025-12-10 17:34:33] -rw-r--r-- 1 boincer umatlas      9345 Dec 10 17:34 runtime_log.err
[2025-12-10 17:34:33] -rw-r--r-- 1 boincer umatlas     21296 Dec 10 17:34 stderr.txt
[2025-12-10 17:34:33] HITS file was successfully produced:
[2025-12-10 17:34:33] -rw------- 1 boincer umatlas 712623246 Dec 10 17:33 shared/HITS.pool.root.1
[2025-12-10 17:34:33]  *** Contents of shared directory: ***
[2025-12-10 17:34:33] total 1070184
[2025-12-10 17:34:33] -rw-r--r-- 2 boincer umatlas 377255531 Dec 10 11:25 ATLAS.root_0
[2025-12-10 17:34:33] -rw-r--r-- 2 boincer umatlas     15847 Dec 10 11:25 start_atlas.sh
[2025-12-10 17:34:33] -rw-r--r-- 2 boincer umatlas    590132 Dec 10 11:25 input.tar.gz
[2025-12-10 17:34:33] -rw------- 1 boincer umatlas 712623246 Dec 10 17:33 HITS.pool.root.1
[2025-12-10 17:34:33] -rw------- 1 boincer umatlas   5365760 Dec 10 17:34 result.tar.gz
17:34:35 (31148): run_atlas exited; CPU time 248100.421051
17:34:35 (31148): called boinc_finish(0)

</stderr_txt>
]]>

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