Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-12-11 00:08:59 (9560): vboxwrapper version 26210
2025-12-11 00:08:59 (9560): BOINC client version: 8.0.2
2025-12-11 00:09:06 (9560): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2025-12-11 00:09:06 (9560): Successfully copied 'init_data.xml' to the shared directory.
2025-12-11 00:09:07 (9560): Create VM. (boinc_c5b0a58f3c345b69, slot#2)
2025-12-11 00:09:10 (9560): Setting Memory Size for VM. (4800MB)
2025-12-11 00:09:10 (9560): Setting CPU Count for VM. (8)
2025-12-11 00:09:10 (9560): Setting Chipset Options for VM.
2025-12-11 00:09:10 (9560): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-12-11 00:09:11 (9560): Setting Boot Options for VM.
2025-12-11 00:09:11 (9560): Setting Network Configuration for NAT. (Driver: virtio)
2025-12-11 00:09:12 (9560): Enabling VM Network Access.
2025-12-11 00:09:12 (9560): Disabling USB Support for VM.
2025-12-11 00:09:12 (9560): Disabling COM Port Support for VM.
2025-12-11 00:09:12 (9560): Disabling LPT Port Support for VM.
2025-12-11 00:09:13 (9560): Disabling Audio Support for VM.
2025-12-11 00:09:13 (9560): Disabling Clipboard Support for VM.
2025-12-11 00:09:13 (9560): Disabling Drag and Drop Support for VM.
2025-12-11 00:09:13 (9560): Adding storage controller(s) to VM.
2025-12-11 00:09:14 (9560): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-12-11 00:09:17 (9560): Adding VirtualBox Guest Additions to VM.
2025-12-11 00:09:18 (9560): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-12-11 00:09:18 (9560): forwarding host port 50543 to guest port 80
2025-12-11 00:09:18 (9560): Enabling remote desktop for VM.
2025-12-11 00:09:18 (9560): Required extension pack not installed, remote desktop not enabled.
2025-12-11 00:09:18 (9560): Enabling shared directory for VM.
2025-12-11 00:09:19 (9560): Starting VM using VBoxManage interface. (boinc_c5b0a58f3c345b69, slot#2)
2025-12-11 00:09:33 (9560): Successfully started VM. (PID = '12344')
2025-12-11 00:09:33 (9560): Reporting VM Process ID to BOINC.
2025-12-11 00:09:33 (9560): Guest Log: BIOS: VirtualBox 5.2.44
2025-12-11 00:09:33 (9560): Guest Log: CPUID EDX: 0x178bfbff
2025-12-11 00:09:33 (9560): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-12-11 00:09:33 (9560): VM state change detected. (old = 'poweredoff', new = 'running')
2025-12-11 00:09:33 (9560): Detected: Web Application Enabled (http://localhost:50543)
2025-12-11 00:09:33 (9560): Preference change detected
2025-12-11 00:09:33 (9560): Setting CPU throttle for VM. (100%)
2025-12-11 00:09:33 (9560): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-12-11 00:09:35 (9560): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-12-11 00:09:35 (9560): Guest Log: BIOS: Booting from Hard Disk...
2025-12-11 00:09:38 (9560): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-12-11 00:09:38 (9560): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-12-11 00:09:38 (9560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-12-11 00:09:47 (9560): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-12-11 00:09:47 (9560): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-12-11 00:09:55 (9560): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-12-11 00:09:55 (9560): Guest Log: 00:00:00.000192 main     Log opened 2025-12-11T00:09:53.024404000Z
2025-12-11 00:09:55 (9560): Guest Log: 00:00:00.000344 main     OS Product: Linux
2025-12-11 00:09:55 (9560): Guest Log: 00:00:00.000376 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-12-11 00:09:55 (9560): Guest Log: 00:00:00.000398 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-12-11 00:09:55 (9560): Guest Log: 00:00:00.000420 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-12-11 00:09:55 (9560): Guest Log: 00:00:00.000421 main     Process ID: 1370
2025-12-11 00:09:55 (9560): Guest Log: 00:00:00.000421 main     Package type: LINUX_64BITS_GENERIC
2025-12-11 00:09:55 (9560): Guest Log: 00:00:00.001260 main     5.2.32 r132073 started. Verbose level = 0
2025-12-11 00:09:55 (9560): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-12-11 00:09:55 (9560): Guest Log: [INFO] Mounting shared directory
2025-12-11 00:09:55 (9560): Guest Log: [INFO] Checking for init_data.xml
2025-12-11 00:10:03 (9560): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-12-11 00:10:03 (9560): Guest Log: [INFO] Detected branch: prod
2025-12-11 00:10:03 (9560): Guest Log: This is the prod version of the ATLAS job wrapper
2025-12-11 00:10:03 (9560): Guest Log: Copying input files
2025-12-11 00:10:05 (9560): Guest Log: 00:00:10.004093 timesync vgsvcTimeSyncWorker: Radical guest time change: -35 988 681 116 000ns (GuestNow=1 765 375 804 345 567 000 ns GuestLast=1 765 411 793 026 683 000 ns fSetTimeLastLoop=true )
2025-12-11 00:10:05 (9560): Guest Log: Copied input files into RunAtlas.
2025-12-11 00:10:05 (9560): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-12-11 00:10:05 (9560): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-12-11 00:10:05 (9560): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-12-11 00:10:05 (9560): Guest Log: Further information can be found at the LHC@home message board.
2025-12-11 00:11:11 (9560): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-12-11 00:11:11 (9560): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-12-11 00:11:11 (9560): Guest Log: 2.6.3.0 1651 1 30184 153842 4 1 3117640 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-12-11 00:11:21 (9560): Guest Log: copied the webapp to /var/www
2025-12-11 00:11:21 (9560): Guest Log: ATHENA_PROC_NUMBER=8
2025-12-11 00:11:21 (9560): Guest Log: ATHENA_CORE_NUMBER=8
2025-12-11 00:11:22 (9560): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-12-11 00:11:22 (9560): Guest Log:  *** Starting ATLAS job. (PandaID=6895337669 taskID=47556137) ***
2025-12-11 01:49:37 (9560): Status Report: Elapsed Time: '6000.000000'
2025-12-11 01:49:37 (9560): Status Report: CPU Time: '42312.593750'
2025-12-11 03:29:41 (9560): Status Report: Elapsed Time: '12000.000000'
2025-12-11 03:29:41 (9560): Status Report: CPU Time: '90315.828125'
2025-12-11 05:09:46 (9560): Status Report: Elapsed Time: '18000.000000'
2025-12-11 05:09:46 (9560): Status Report: CPU Time: '138285.390625'
2025-12-11 06:49:51 (9560): Status Report: Elapsed Time: '24000.000000'
2025-12-11 06:49:51 (9560): Status Report: CPU Time: '186287.890625'
2025-12-11 08:08:12 (9560): Guest Log:  *** Job finished ***
2025-12-11 08:08:12 (9560): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-12-11 08:08:12 (9560): Guest Log: 2025-12-10 22:07:57,299 | INFO     | all workflow threads have been joined
2025-12-11 08:08:12 (9560): Guest Log: 2025-12-10 22:07:57,300 | INFO     | end of generic workflow (traces error code: 0)
2025-12-11 08:08:12 (9560): Guest Log: 2025-12-10 22:07:57,300 | INFO     | traces error code: 0
2025-12-11 08:08:12 (9560): Guest Log: 2025-12-10 22:07:57,300 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-12-11 08:08:12 (9560): Guest Log: 2025-12-10 22:07:57,602 | INFO     | PID=6119 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-12-11 08:08:12 (9560): Guest Log: 2025-12-10 22:07:57,603 | INFO     | found 0 job(s) in 20 queues
2025-12-11 08:08:12 (9560): Guest Log: 2025-12-10 22:07:57,603 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-12-11 08:08:12 (9560): Guest Log: 2025-12-10 22:07:57,603 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-12-11 08:08:12 (9560): Guest Log: 2025-12-10 22:07:57,603 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-12-11 08:08:12 (9560): Guest Log: 2025-12-10 22:07:57,603 | INFO     | [monitor] control thread has ended
2025-12-11 08:08:12 (9560): Guest Log: 2025-12-10 22:07:57,742 [wrapper] ==== pilot stdout END ====
2025-12-11 08:08:12 (9560): Guest Log: 2025-12-10 22:07:57,749 [wrapper] ==== wrapper stdout RESUME ====
2025-12-11 08:08:12 (9560): Guest Log: 2025-12-10 22:07:57,756 [wrapper] pilotpid: 6119
2025-12-11 08:08:12 (9560): Guest Log: 2025-12-10 22:07:57,761 [wrapper] Pilot exit status: 0
2025-12-11 08:08:12 (9560): Guest Log: 2025-12-10 22:07:57,785 [wrapper] pandaids: 6895337669
2025-12-11 08:08:12 (9560): Guest Log: 2025-12-10 22:07:57,818 [wrapper] cleanup supervisor_pilot  1274 6120
2025-12-11 08:08:12 (9560): Guest Log: 2025-12-10 22:07:57,824 [wrapper] Test setup, not cleaning
2025-12-11 08:08:12 (9560): Guest Log: 2025-12-10 22:07:57,831 [wrapper] apfmon messages muted
2025-12-11 08:08:12 (9560): Guest Log: 2025-12-10 22:07:57,836 [wrapper] ==== wrapper stdout END ====
2025-12-11 08:08:12 (9560): Guest Log: 2025-12-10 22:07:57,841 [wrapper] ==== wrapper stderr END ====
2025-12-11 08:08:12 (9560): Guest Log:  *** Error codes and diagnostics ***
2025-12-11 08:08:12 (9560): Guest Log:     "exeErrorCode": 0,
2025-12-11 08:08:12 (9560): Guest Log:     "exeErrorDiag": "",
2025-12-11 08:08:12 (9560): Guest Log:     "pilotErrorCode": 0,
2025-12-11 08:08:12 (9560): Guest Log:     "pilotErrorDiag": "",
2025-12-11 08:08:12 (9560): Guest Log:  *** Listing of results directory ***
2025-12-11 08:08:12 (9560): Guest Log: total 910328
2025-12-11 08:08:12 (9560): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 22 07:52 pilot3.tar.gz
2025-12-11 08:08:12 (9560): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 22 08:18 queuedata.json
2025-12-11 08:08:12 (9560): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 22 08:20 runpilot2-wrapper.sh
2025-12-11 08:08:12 (9560): Guest Log: -rwxr-xr-x. 1 atlas atlas      9012 Dec 10 14:10 init_data.xml
2025-12-11 08:08:12 (9560): Guest Log: -rwxr-xr-x. 1 atlas atlas    590103 Dec 10 14:10 input.tar.gz
2025-12-11 08:08:12 (9560): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Dec 10 14:10 start_atlas.sh
2025-12-11 08:08:12 (9560): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Dec 10 14:10 EVNT.47483658._000314.pool.root.1 -> /data/./ATLAS.root_0
2025-12-11 08:08:12 (9560): Guest Log: -rw-r--r--. 1 atlas atlas      2782 Dec 10 14:11 pandaJob.out
2025-12-11 08:08:12 (9560): Guest Log: -rw-------. 1 atlas atlas    993137 Dec 10 14:12 agis_schedconf.cvmfs.json
2025-12-11 08:08:12 (9560): Guest Log: drwx------. 5 atlas atlas      4096 Dec 10 14:12 pilot3
2025-12-11 08:08:12 (9560): Guest Log: -rw-------. 1 atlas atlas 917247780 Dec 10 22:06 HITS.47556137._003101.pool.root.1
2025-12-11 08:08:12 (9560): Guest Log: -rw-------. 1 atlas atlas      1049 Dec 10 22:07 memory_monitor_summary.json
2025-12-11 08:08:12 (9560): Guest Log: -rw-------. 1 atlas atlas   1516240 Dec 10 22:07 agis_ddmendpoints.agis.ALL.json
2025-12-11 08:08:12 (9560): Guest Log: -rw-------. 1 atlas atlas   1749000 Dec 10 22:07 log.47556137._003101.job.log.tgz.1
2025-12-11 08:08:12 (9560): Guest Log: -rw-------. 1 atlas atlas      8657 Dec 10 22:07 heartbeat.json
2025-12-11 08:08:12 (9560): Guest Log: -rw-------. 1 atlas atlas        95 Dec 10 22:07 pilot_heartbeat.json
2025-12-11 08:08:12 (9560): Guest Log: -rw-------. 1 atlas atlas       744 Dec 10 22:07 pilotlog.txt
2025-12-11 08:08:12 (9560): Guest Log: -rw-------. 1 atlas atlas   3790912 Dec 10 22:07 log.47556137._003101.job.log.1
2025-12-11 08:08:12 (9560): Guest Log: -rw-------. 1 atlas atlas       353 Dec 10 22:07 output.list
2025-12-11 08:08:12 (9560): Guest Log: -rw-r--r--. 1 atlas atlas       620 Dec 10 22:07 runtime_log
2025-12-11 08:08:12 (9560): Guest Log: -rw-------. 1 atlas atlas   5560320 Dec 10 22:07 result.tar.gz
2025-12-11 08:08:12 (9560): Guest Log: -rw-------. 1 atlas atlas       656 Dec 10 22:07 uJqMDmi2xg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmW3JKDmnkSwVo.diag
2025-12-11 08:08:12 (9560): Guest Log: -rw-r--r--. 1 atlas atlas      8732 Dec 10 22:07 runtime_log.err
2025-12-11 08:08:12 (9560): Guest Log: Looking for outputfile HITS.47556137._003101.pool.root.1
2025-12-11 08:08:12 (9560): Guest Log: HITS file was successfully produced
2025-12-11 08:08:12 (9560): Guest Log: -rw-------. 1 atlas atlas 917247780 Dec 10 22:06 /home/atlas/RunAtlas/HITS.47556137._003101.pool.root.1
2025-12-11 08:08:17 (9560): Guest Log: Successfully finished the ATLAS job!
2025-12-11 08:08:17 (9560): Guest Log: Copying the results back to the shared directory!
2025-12-11 08:08:17 (9560): Guest Log:  *** Contents of shared directory: ***
2025-12-11 08:08:17 (9560): Guest Log: total 1304020
2025-12-11 08:08:17 (9560): Guest Log: -rwxrwxrwx. 1 root root 411879575 Dec 10 14:08 ATLAS.root_0
2025-12-11 08:08:17 (9560): Guest Log: -rwxrwxrwx. 1 root root 917247780 Dec 10  2025 HITS.pool.root.1
2025-12-11 08:08:17 (9560): Guest Log: -rwxrwxrwx. 1 root root      9012 Dec 10 14:08 init_data.xml
2025-12-11 08:08:17 (9560): Guest Log: -rwxrwxrwx. 1 root root    590103 Dec 10 14:06 input.tar.gz
2025-12-11 08:08:17 (9560): Guest Log: -rwxrwxrwx. 1 root root   5560320 Dec 10  2025 result.tar.gz
2025-12-11 08:08:17 (9560): Guest Log: -rwxrwxrwx. 1 root root     15847 Dec 10 14:06 start_atlas.sh
2025-12-11 08:08:17 (9560): Guest Log:  *** Success! Shutting down the machine. ***
2025-12-11 08:08:17 (9560): VM Completion File Detected.
2025-12-11 08:08:17 (9560): Powering off VM.
2025-12-11 08:08:18 (9560): Successfully stopped VM.
2025-12-11 08:08:18 (9560): Deregistering VM. (boinc_c5b0a58f3c345b69, slot#2)
2025-12-11 08:08:18 (9560): Removing network bandwidth throttle group from VM.
2025-12-11 08:08:18 (9560): Removing VM from VirtualBox.
2025-12-11 08:08:23 (9560): called boinc_finish(0)

</stderr_txt>
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