Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
05:38:57 (1386938): wrapper (7.7.26015): starting
05:38:57 (1386938): wrapper: running run_atlas (--nthreads 4)
[2025-12-11 05:38:57] Arguments: --nthreads 4
[2025-12-11 05:38:57] Threads: 4
[2025-12-11 05:38:57] Checking for CVMFS
[2025-12-11 05:38:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-11 05:38:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-11 05:38:57] Running cvmfs_config stat atlas.cern.ch
[2025-12-11 05:38:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-11 05:38:57] 2.13.2.0 698859 30168 66756 153879 3 76 2927409 4096000 3286 130560 0 48968391 99.928 3389320 1031 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-11 05:38:57] CVMFS is ok
[2025-12-11 05:38:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-11 05:38:57] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-11 05:38:57] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-11 05:38:57] Further information can be found at the LHC@home message board.
[2025-12-11 05:38:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-11 05:38:57] Checking for apptainer binary...
[2025-12-11 05:38:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-11 05:38:57] Running /usr/bin/apptainer --version
[2025-12-11 05:38:57] apptainer version 1.4.3
[2025-12-11 05:38:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-11 05:38:57] Taichi-Ubuntu
[2025-12-11 05:38:57] apptainer works
[2025-12-11 05:38:57] Set ATHENA_PROC_NUMBER=4
[2025-12-11 05:38:57] Set ATHENA_CORE_NUMBER=4
[2025-12-11 05:38:57] Starting ATLAS job with PandaID=6901270872
[2025-12-11 05:38:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:08:51 (14547): wrapper (7.7.26015): starting
09:08:51 (14547): wrapper: running run_atlas (--nthreads 4)
[2025-12-11 09:08:51] Arguments: --nthreads 4
[2025-12-11 09:08:51] Threads: 4
[2025-12-11 09:08:51] This job has been restarted, cleaning up previous attempt
[2025-12-11 09:08:51] Checking for CVMFS
[2025-12-11 09:08:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-11 09:08:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-11 09:08:53] Running cvmfs_config stat atlas.cern.ch
[2025-12-11 09:08:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-11 09:08:54] 2.13.2.0 15124 0 24652 153887 3 1 2970649 4096000 0 130560 0 0 100.000 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-11 09:08:54] CVMFS is ok
[2025-12-11 09:08:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-11 09:08:54] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-11 09:08:54] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-11 09:08:54] Further information can be found at the LHC@home message board.
[2025-12-11 09:08:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-11 09:08:54] Checking for apptainer binary...
[2025-12-11 09:08:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-11 09:08:54] Running /usr/bin/apptainer --version
[2025-12-11 09:08:54] apptainer version 1.4.3
[2025-12-11 09:08:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-11 09:08:54] Taichi-Ubuntu
[2025-12-11 09:08:54] apptainer works
[2025-12-11 09:08:54] Set ATHENA_PROC_NUMBER=4
[2025-12-11 09:08:54] Set ATHENA_CORE_NUMBER=4
[2025-12-11 09:08:54] Starting ATLAS job with PandaID=6901270872
[2025-12-11 09:08:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-11 19:47:14]  *** The last 200 lines of the pilot log: ***
[2025-12-11 19:47:14] 2025-12-12 00:46:38,977 | INFO     | time since job start (38246s) is within the limit (174528.0s)
[2025-12-11 19:47:14] 2025-12-12 00:46:40,953 | INFO     | monitor loop #2811: job 0:6901270872 is in state 'finished'
[2025-12-11 19:47:14] 2025-12-12 00:46:40,954 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-11 19:47:14] 2025-12-12 00:46:40,982 | INFO     | time since job start (38248s) is within the limit (174528.0s)
[2025-12-11 19:47:14] 2025-12-12 00:46:42,052 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-11 19:47:14] 2025-12-12 00:46:42,062 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 3087.740875000001
[2025-12-11 19:47:14] 2025-12-12 00:46:42,073 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/9/PanDA_Pilot-6901270872/memory_monitor_summary.json (trf name=prmon)
[2025-12-11 19:47:14] 2025-12-12 00:46:42,075 | INFO     | extracted standard info from prmon json
[2025-12-11 19:47:14] 2025-12-12 00:46:42,075 | INFO     | extracted standard memory fields from prmon json
[2025-12-11 19:47:14] 2025-12-12 00:46:42,075 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-11 19:47:14] 2025-12-12 00:46:42,088 | INFO     | fitting pss+swap vs Time
[2025-12-11 19:47:14] 2025-12-12 00:46:42,089 | INFO     | sum of square deviations: 76432830298.0
[2025-12-11 19:47:14] 2025-12-12 00:46:42,098 | INFO     | sum of deviations: 389535750963.00006
[2025-12-11 19:47:14] 2025-12-12 00:46:42,098 | INFO     | mean x: 1765481276.0
[2025-12-11 19:47:14] 2025-12-12 00:46:42,098 | INFO     | mean y: 2673152.547049442
[2025-12-11 19:47:14] 2025-12-12 00:46:42,098 | INFO     | intersect: -8995005881.141317
[2025-12-11 19:47:14] 2025-12-12 00:46:42,099 | INFO     | chi2: 4.415006418527239
[2025-12-11 19:47:14] 2025-12-12 00:46:42,100 | INFO     | sum of square deviations: 74618833495.5
[2025-12-11 19:47:14] 2025-12-12 00:46:42,104 | INFO     | sum of deviations: 541563748822.99994
[2025-12-11 19:47:14] 2025-12-12 00:46:42,104 | INFO     | mean x: 1765481123.5
[2025-12-11 19:47:14] 2025-12-12 00:46:42,104 | INFO     | mean y: 2685920.996784566
[2025-12-11 19:47:14] 2025-12-12 00:46:42,104 | INFO     | intersect: -12810708914.189993
[2025-12-11 19:47:14] 2025-12-12 00:46:42,104 | INFO     | chi2: 2.3639429794863145
[2025-12-11 19:47:14] 2025-12-12 00:46:42,105 | INFO     | current chi2=2.3639429794863145 (change=46.45663549737532 %)
[2025-12-11 19:47:14] 2025-12-12 00:46:42,105 | INFO     | sum of square deviations: 72833767468.0
[2025-12-11 19:47:14] 2025-12-12 00:46:42,109 | INFO     | sum of deviations: 546884956882.00006
[2025-12-11 19:47:14] 2025-12-12 00:46:42,109 | INFO     | mean x: 1765480971.0
[2025-12-11 19:47:14] 2025-12-12 00:46:42,109 | INFO     | mean y: 2686370.0016207458
[2025-12-11 19:47:14] 2025-12-12 00:46:42,110 | INFO     | intersect: -13253733258.7857
[2025-12-11 19:47:14] 2025-12-12 00:46:42,110 | INFO     | chi2: 2.325339508361568
[2025-12-11 19:47:14] 2025-12-12 00:46:42,110 | INFO     | current chi2=2.325339508361568 (change=1.6330119406321315 %)
[2025-12-11 19:47:14] 2025-12-12 00:46:42,110 | INFO     | right removable region: 616
[2025-12-11 19:47:14] 2025-12-12 00:46:42,111 | INFO     | sum of square deviations: 74618833495.5
[2025-12-11 19:47:14] 2025-12-12 00:46:42,116 | INFO     | sum of deviations: 236858388613.50006
[2025-12-11 19:47:14] 2025-12-12 00:46:42,116 | INFO     | mean x: 1765481428.5
[2025-12-11 19:47:14] 2025-12-12 00:46:42,116 | INFO     | mean y: 2685958.307073955
[2025-12-11 19:47:14] 2025-12-12 00:46:42,116 | INFO     | intersect: -5601382970.307156
[2025-12-11 19:47:14] 2025-12-12 00:46:42,117 | INFO     | chi2: 2.192413599854552
[2025-12-11 19:47:14] 2025-12-12 00:46:42,117 | INFO     | current chi2=2.192413599854552 (change=50.34178001068684 %)
[2025-12-11 19:47:14] 2025-12-12 00:46:42,117 | INFO     | sum of square deviations: 72833767468.0
[2025-12-11 19:47:14] 2025-12-12 00:46:42,122 | INFO     | sum of deviations: 216330759168.00003
[2025-12-11 19:47:14] 2025-12-12 00:46:42,122 | INFO     | mean x: 1765481581.0
[2025-12-11 19:47:14] 2025-12-12 00:46:42,122 | INFO     | mean y: 2687711.954619125
[2025-12-11 19:47:14] 2025-12-12 00:46:42,122 | INFO     | intersect: -5241143329.500892
[2025-12-11 19:47:14] 2025-12-12 00:46:42,122 | INFO     | chi2: 2.177554367183303
[2025-12-11 19:47:14] 2025-12-12 00:46:42,122 | INFO     | current chi2=2.177554367183303 (change=0.6777568188883099 %)
[2025-12-11 19:47:14] 2025-12-12 00:46:42,123 | INFO     | left removable region: 20
[2025-12-11 19:47:14] 2025-12-12 00:46:42,123 | INFO     | sum of square deviations: 65647165745.0
[2025-12-11 19:47:14] 2025-12-12 00:46:42,127 | INFO     | sum of deviations: 333988338778.5001
[2025-12-11 19:47:14] 2025-12-12 00:46:42,127 | INFO     | mean x: 1765481550.5
[2025-12-11 19:47:14] 2025-12-12 00:46:42,127 | INFO     | mean y: 2704818.1929530203
[2025-12-11 19:47:14] 2025-12-12 00:46:42,127 | INFO     | intersect: -8979408019.48879
[2025-12-11 19:47:14] 2025-12-12 00:46:42,128 | INFO     | chi2: 0.05042805259542656
[2025-12-11 19:47:14] 2025-12-12 00:46:42,128 | INFO     | current memory leak: 5.09 B/s (using 596 data points, chi2=0.05)
[2025-12-11 19:47:14] 2025-12-12 00:46:42,128 | INFO     | could have reported an average CPU frequency of 3174 MHz (25 samples)
[2025-12-11 19:47:14] 2025-12-12 00:46:42,128 | INFO     | ..............................
[2025-12-11 19:47:14] 2025-12-12 00:46:42,129 | INFO     | . Timing measurements:
[2025-12-11 19:47:14] 2025-12-12 00:46:42,129 | INFO     | . get job = 0 s
[2025-12-11 19:47:14] 2025-12-12 00:46:42,129 | INFO     | . initial setup = 3 s
[2025-12-11 19:47:14] 2025-12-12 00:46:42,129 | INFO     | . payload setup = 10 s
[2025-12-11 19:47:14] 2025-12-12 00:46:42,129 | INFO     | . stage-in = 0 s
[2025-12-11 19:47:14] 2025-12-12 00:46:42,129 | INFO     | . payload execution = 38211 s
[2025-12-11 19:47:14] 2025-12-12 00:46:42,129 | INFO     | . stage-out = 3 s
[2025-12-11 19:47:14] 2025-12-12 00:46:42,129 | INFO     | . log creation = 0 s
[2025-12-11 19:47:14] 2025-12-12 00:46:42,129 | INFO     | ..............................
[2025-12-11 19:47:14] 2025-12-12 00:46:42,372 | INFO     | 
[2025-12-11 19:47:14] 2025-12-12 00:46:42,372 | INFO     | job summary report
[2025-12-11 19:47:14] 2025-12-12 00:46:42,372 | INFO     | --------------------------------------------------
[2025-12-11 19:47:14] 2025-12-12 00:46:42,372 | INFO     | PanDA job id: 6901270872
[2025-12-11 19:47:14] 2025-12-12 00:46:42,372 | INFO     | task id: 47531058
[2025-12-11 19:47:14] 2025-12-12 00:46:42,373 | INFO     | errors: (none)
[2025-12-11 19:47:14] 2025-12-12 00:46:42,373 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-11 19:47:14] 2025-12-12 00:46:42,373 | INFO     | pilot state: finished 
[2025-12-11 19:47:14] 2025-12-12 00:46:42,373 | INFO     | transexitcode: 0
[2025-12-11 19:47:14] 2025-12-12 00:46:42,373 | INFO     | exeerrorcode: 0
[2025-12-11 19:47:14] 2025-12-12 00:46:42,373 | INFO     | exeerrordiag: 
[2025-12-11 19:47:14] 2025-12-12 00:46:42,373 | INFO     | exitcode: 0
[2025-12-11 19:47:14] 2025-12-12 00:46:42,373 | INFO     | exitmsg: OK
[2025-12-11 19:47:14] 2025-12-12 00:46:42,373 | INFO     | cpuconsumptiontime: 151711 s
[2025-12-11 19:47:14] 2025-12-12 00:46:42,374 | INFO     | nevents: 1000
[2025-12-11 19:47:14] 2025-12-12 00:46:42,374 | INFO     | neventsw: 0
[2025-12-11 19:47:14] 2025-12-12 00:46:42,374 | INFO     | pid: 86793
[2025-12-11 19:47:14] 2025-12-12 00:46:42,374 | INFO     | pgrp: 86793
[2025-12-11 19:47:14] 2025-12-12 00:46:42,374 | INFO     | corecount: 4
[2025-12-11 19:47:14] 2025-12-12 00:46:42,374 | INFO     | event service: False
[2025-12-11 19:47:14] 2025-12-12 00:46:42,374 | INFO     | sizes: {0: 2284621, 5: 2284883, 11: 2284939, 38225: 2346835, 38228: 2355857, 38229: 2355913, 38235: 2356351}
[2025-12-11 19:47:14] 2025-12-12 00:46:42,374 | INFO     | --------------------------------------------------
[2025-12-11 19:47:14] 2025-12-12 00:46:42,375 | INFO     | 
[2025-12-11 19:47:14] 2025-12-12 00:46:42,375 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/9
[2025-12-11 19:47:14] 2025-12-12 00:46:42,403 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-11 19:47:14] 2025-12-12 00:46:42,403 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-11 19:47:14] 2025-12-12 00:46:42,403 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-11 19:47:14] 2025-12-12 00:46:42,403 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-11 19:47:14] 2025-12-12 00:46:42,403 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-11 19:47:14] 2025-12-12 00:46:42,404 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-11 19:47:14] 2025-12-12 00:46:42,404 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-11 19:47:14] 2025-12-12 00:46:42,404 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-11 19:47:14] 2025-12-12 00:46:42,404 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-11 19:47:14] 2025-12-12 00:46:42,404 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-11 19:47:14] 2025-12-12 00:46:42,404 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-11 19:47:14] 2025-12-12 00:46:42,404 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-11 19:47:14] 2025-12-12 00:46:42,404 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-11 19:47:14] 2025-12-12 00:46:42,404 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-11 19:47:14] 2025-12-12 00:46:42,405 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-11 19:47:14] 2025-12-12 00:46:42,405 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-11 19:47:14] 2025-12-12 00:46:42,405 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-11 19:47:14] 2025-12-12 00:46:42,405 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-11 19:47:14] 2025-12-12 00:46:42,405 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-11 19:47:14] 2025-12-12 00:46:42,405 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-11 19:47:14] 2025-12-12 00:46:42,405 | INFO     | job 6901270872 has completed (purged errors)
[2025-12-11 19:47:14] 2025-12-12 00:46:42,405 | INFO     | overall cleanup function is called
[2025-12-11 19:47:14] 2025-12-12 00:46:43,424 | INFO     | --- collectZombieJob: --- 10, [86793]
[2025-12-11 19:47:14] 2025-12-12 00:46:43,424 | INFO     | zombie collector waiting for pid 86793
[2025-12-11 19:47:14] 2025-12-12 00:46:43,425 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-11 19:47:14] 2025-12-12 00:46:43,425 | INFO     | collected zombie processes
[2025-12-11 19:47:14] 2025-12-12 00:46:43,425 | INFO     | will attempt to kill all subprocesses of pid=86793
[2025-12-11 19:47:14] 2025-12-12 00:46:43,699 | INFO     | process IDs to be killed: [86793] (in reverse order)
[2025-12-11 19:47:14] 2025-12-12 00:46:43,796 | WARNING  | found no corresponding commands to process id(s)
[2025-12-11 19:47:14] 2025-12-12 00:46:43,797 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-11 19:47:14] 2025-12-12 00:46:43,807 | INFO     | did not find any defunct processes belonging to 86793
[2025-12-11 19:47:14] 2025-12-12 00:46:43,816 | INFO     | did not find any defunct processes belonging to 86793
[2025-12-11 19:47:14] 2025-12-12 00:46:43,816 | INFO     | ready for new job
[2025-12-11 19:47:14] 2025-12-12 00:46:43,816 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-11 19:47:14] 2025-12-12 00:46:43,821 | INFO     | ***************************************
[2025-12-11 19:47:14] 2025-12-12 00:46:43,821 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-11 19:47:14] 2025-12-12 00:46:43,821 | INFO     | ***************************************
[2025-12-11 19:47:14] 2025-12-12 00:46:43,821 | INFO     | 
[2025-12-11 19:47:14] 2025-12-12 00:46:43,823 | INFO     | architecture information:
[2025-12-11 19:47:14] 2025-12-12 00:46:43,823 | INFO     | executing command: cat /etc/os-release
[2025-12-11 19:47:14] 2025-12-12 00:46:43,841 | INFO     | cat /etc/os-release:
[2025-12-11 19:47:14] NAME="CentOS Linux"
[2025-12-11 19:47:14] VERSION="7 (Core)"
[2025-12-11 19:47:14] ID="centos"
[2025-12-11 19:47:14] ID_LIKE="rhel fedora"
[2025-12-11 19:47:14] VERSION_ID="7"
[2025-12-11 19:47:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-11 19:47:14] ANSI_COLOR="0;31"
[2025-12-11 19:47:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-11 19:47:14] HOME_URL="https://www.centos.org/"
[2025-12-11 19:47:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-11 19:47:14] 
[2025-12-11 19:47:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-11 19:47:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-11 19:47:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-11 19:47:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-11 19:47:14] 
[2025-12-11 19:47:14] 2025-12-12 00:46:43,842 | INFO     | ***************************************
[2025-12-11 19:47:14] 2025-12-12 00:46:44,345 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/9
[2025-12-11 19:47:14] 2025-12-12 00:46:44,363 | INFO     | sufficient remaining disk space (375624040448 B)
[2025-12-11 19:47:14] 2025-12-12 00:46:44,363 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-11 19:47:14] 2025-12-12 00:46:44,364 | INFO     | current server update state: UPDATING_FINAL
[2025-12-11 19:47:14] 2025-12-12 00:46:44,364 | INFO     | update_server=False
[2025-12-11 19:47:14] 2025-12-12 00:46:44,364 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-11 19:47:14] 2025-12-12 00:46:44,364 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-11 19:47:14] 2025-12-12 00:46:44,462 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-11 19:47:14] 2025-12-12 00:46:44,462 | INFO     | aborting loop
[2025-12-11 19:47:14] 2025-12-12 00:46:44,935 | INFO     | all data control threads have been joined
[2025-12-11 19:47:14] 2025-12-12 00:46:45,303 | INFO     | all payload control threads have been joined
[2025-12-11 19:47:14] 2025-12-12 00:46:45,369 | INFO     | [job] retrieve thread has finished
[2025-12-11 19:47:14] 2025-12-12 00:46:45,467 | INFO     | [job] job monitor thread has finished
[2025-12-11 19:47:14] 2025-12-12 00:46:45,472 | INFO     | [payload] execute_payloads thread has finished
[2025-12-11 19:47:14] 2025-12-12 00:46:45,615 | INFO     | all job control threads have been joined
[2025-12-11 19:47:14] 2025-12-12 00:46:45,727 | INFO     | [payload] failed_post thread has finished
[2025-12-11 19:47:14] 2025-12-12 00:46:45,940 | INFO     | [data] control thread has finished
[2025-12-11 19:47:14] 2025-12-12 00:46:45,967 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-11 19:47:14] 2025-12-12 00:46:46,029 | INFO     | [payload] validate_pre thread has finished
[2025-12-11 19:47:14] 2025-12-12 00:46:46,099 | INFO     | [job] validate thread has finished
[2025-12-11 19:47:14] 2025-12-12 00:46:46,309 | INFO     | [payload] control thread has finished
[2025-12-11 19:47:14] 2025-12-12 00:46:46,366 | INFO     | [payload] validate_post thread has finished
[2025-12-11 19:47:14] 2025-12-12 00:46:46,370 | INFO     | [data] copytool_out thread has finished
[2025-12-11 19:47:14] 2025-12-12 00:46:46,489 | INFO     | [job] create_data_payload thread has finished
[2025-12-11 19:47:14] 2025-12-12 00:46:46,491 | INFO     | [data] copytool_in thread has finished
[2025-12-11 19:47:14] 2025-12-12 00:46:46,621 | INFO     | [job] control thread has finished
[2025-12-11 19:47:14] 2025-12-12 00:46:46,786 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-11 19:47:14] 2025-12-12 00:46:47,209 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-11 19:47:14] 2025-12-12 00:46:48,215 | INFO     | [job] queue monitor thread has finished
[2025-12-11 19:47:14] 2025-12-12 00:46:50,792 | INFO     | [data] queue_monitor thread has finished
[2025-12-11 19:47:14] 2025-12-12 00:47:08,316 | INFO     | [monitor] cgroup control has ended
[2025-12-11 19:47:14] 2025-12-12 00:47:09,574 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123155670472512)>', '<ExcThread(monitor, started 123154957592320)>']
[2025-12-11 19:47:14] 2025-12-12 00:47:14,324 | INFO     | PID=34766 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-11 19:47:14] 2025-12-12 00:47:14,325 | INFO     | .. there are 5 such processes running
[2025-12-11 19:47:14] 2025-12-12 00:47:14,325 | INFO     | found 0 job(s) in 20 queues
[2025-12-11 19:47:14] 2025-12-12 00:47:14,325 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-11 19:47:14] 2025-12-12 00:47:14,325 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-11 19:47:14] 2025-12-12 00:47:14,325 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-11 19:47:14] 2025-12-12 00:47:14,325 | INFO     | [monitor] control thread has ended
[2025-12-11 19:47:14] 2025-12-12 00:47:14,599 | INFO     | all workflow threads have been joined
[2025-12-11 19:47:14] 2025-12-12 00:47:14,600 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-11 19:47:14] 2025-12-12 00:47:14,600 | INFO     | traces error code: 0
[2025-12-11 19:47:14] 2025-12-12 00:47:14,600 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-11 19:47:14] 2025-12-12 00:47:14,761 [wrapper] ==== pilot stdout END ====
[2025-12-11 19:47:14] 2025-12-12 00:47:14,765 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-11 19:47:14] 2025-12-12 00:47:14,770 [wrapper] pilotpid: 34766
[2025-12-11 19:47:14] 2025-12-12 00:47:14,774 [wrapper] Pilot exit status: 0
[2025-12-11 19:47:14] 2025-12-12 00:47:14,788 [wrapper] pandaids: 6901270872 6901270872
[2025-12-11 19:47:14] 2025-12-12 00:47:14,854 [wrapper] cleanup supervisor_pilot  481516 34767
[2025-12-11 19:47:14] 2025-12-12 00:47:14,859 [wrapper] Test setup, not cleaning
[2025-12-11 19:47:14] 2025-12-12 00:47:14,863 [wrapper] apfmon messages muted
[2025-12-11 19:47:14] 2025-12-12 00:47:14,867 [wrapper] ==== wrapper stdout END ====
[2025-12-11 19:47:14] 2025-12-12 00:47:14,871 [wrapper] ==== wrapper stderr END ====
[2025-12-11 19:47:14]  *** Error codes and diagnostics ***
[2025-12-11 19:47:14]     "exeErrorCode": 0,
[2025-12-11 19:47:14]     "exeErrorDiag": "",
[2025-12-11 19:47:14]     "pilotErrorCode": 0,
[2025-12-11 19:47:14]     "pilotErrorDiag": "",
[2025-12-11 19:47:14]  *** Listing of results directory ***
[2025-12-11 19:47:14] total 1444236
[2025-12-11 19:47:14] drwx------ 5 whitlerd whitlerd      4096 Dec  3 09:30 pilot3
[2025-12-11 19:47:14] -rw-r--r-- 1 whitlerd whitlerd    579449 Dec 10 08:36 pilot3.tar.gz
[2025-12-11 19:47:14] -rwx------ 1 whitlerd whitlerd     36292 Dec 10 09:05 runpilot2-wrapper.sh
[2025-12-11 19:47:14] -rw-r--r-- 1 whitlerd whitlerd      5112 Dec 10 09:05 queuedata.json
[2025-12-11 19:47:14] -rw-rw-r-- 1 whitlerd whitlerd       100 Dec 11 05:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-11 19:47:14] -rwxr-xr-x 1 whitlerd whitlerd      7986 Dec 11 05:38 run_atlas
[2025-12-11 19:47:14] -rw-rw-r-- 1 whitlerd whitlerd       105 Dec 11 05:38 job.xml
[2025-12-11 19:47:14] -rw-r--r-- 3 whitlerd whitlerd 377167298 Dec 11 05:38 EVNT.47531050._000588.pool.root.1
[2025-12-11 19:47:14] -rw-r--r-- 3 whitlerd whitlerd 377167298 Dec 11 05:38 ATLAS.root_0
[2025-12-11 19:47:14] -rw-r--r-- 2 whitlerd whitlerd     15847 Dec 11 05:38 start_atlas.sh
[2025-12-11 19:47:14] drwxrwx--x 2 whitlerd whitlerd      4096 Dec 11 05:38 shared
[2025-12-11 19:47:14] -rw-r--r-- 2 whitlerd whitlerd    592586 Dec 11 05:38 input.tar.gz
[2025-12-11 19:47:14] -rw-rw-r-- 1 whitlerd whitlerd         0 Dec 11 05:38 boinc_setup_complete
[2025-12-11 19:47:14] -rw-rw-r-- 1 whitlerd whitlerd         0 Dec 11 05:38 boinc_lockfile
[2025-12-11 19:47:14] -rw-rw-r-- 1 whitlerd whitlerd      9355 Dec 11 09:08 init_data.xml
[2025-12-11 19:47:14] -rw-rw-r-- 1 whitlerd whitlerd      2881 Dec 11 09:08 pandaJob.out
[2025-12-11 19:47:14] -rw------- 1 whitlerd whitlerd    988866 Dec 11 09:09 agis_schedconf.cvmfs.json
[2025-12-11 19:47:14] -rw-rw-r-- 1 whitlerd whitlerd       533 Dec 11 19:39 boinc_task_state.xml
[2025-12-11 19:47:14] -rw------- 1 whitlerd whitlerd 706678072 Dec 11 19:46 HITS.47531058._002039.pool.root.1
[2025-12-11 19:47:14] -rw------- 1 whitlerd whitlerd        96 Dec 11 19:46 pilot_heartbeat.json
[2025-12-11 19:47:14] -rw------- 1 whitlerd whitlerd      1057 Dec 11 19:46 memory_monitor_summary.json
[2025-12-11 19:47:14] -rw------- 1 whitlerd whitlerd   1516240 Dec 11 19:46 agis_ddmendpoints.agis.ALL.json
[2025-12-11 19:47:14] -rw------- 1 whitlerd whitlerd   1530084 Dec 11 19:46 log.47531058._002039.job.log.tgz.1
[2025-12-11 19:47:14] -rw------- 1 whitlerd whitlerd     27844 Dec 11 19:46 heartbeat.json
[2025-12-11 19:47:14] -rw-rw-r-- 1 whitlerd whitlerd        29 Dec 11 19:47 wrapper_checkpoint.txt
[2025-12-11 19:47:14] -rw-rw-r-- 1 whitlerd whitlerd      8192 Dec 11 19:47 boinc_mmap_file
[2025-12-11 19:47:14] -rw------- 1 whitlerd whitlerd      4836 Dec 11 19:47 pilotlog.txt
[2025-12-11 19:47:14] -rw------- 1 whitlerd whitlerd   5430715 Dec 11 19:47 log.47531058._002039.job.log.1
[2025-12-11 19:47:14] -rw------- 1 whitlerd whitlerd       353 Dec 11 19:47 output.list
[2025-12-11 19:47:14] -rw-rw-r-- 1 whitlerd whitlerd       620 Dec 11 19:47 runtime_log
[2025-12-11 19:47:14] -rw------- 1 whitlerd whitlerd   7004160 Dec 11 19:47 result.tar.gz
[2025-12-11 19:47:14] -rw-rw-r-- 1 whitlerd whitlerd      9111 Dec 11 19:47 runtime_log.err
[2025-12-11 19:47:14] -rw------- 1 whitlerd whitlerd       786 Dec 11 19:47 HjrNDmbzZn8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3dQKDm21DIUm.diag
[2025-12-11 19:47:14] -rw-rw-r-- 1 whitlerd whitlerd     23447 Dec 11 19:47 stderr.txt
[2025-12-11 19:47:14] HITS file was successfully produced:
[2025-12-11 19:47:14] -rw------- 1 whitlerd whitlerd 706678072 Dec 11 19:46 shared/HITS.pool.root.1
[2025-12-11 19:47:14]  *** Contents of shared directory: ***
[2025-12-11 19:47:14] total 1065888
[2025-12-11 19:47:14] -rw-r--r-- 3 whitlerd whitlerd 377167298 Dec 11 05:38 ATLAS.root_0
[2025-12-11 19:47:14] -rw-r--r-- 2 whitlerd whitlerd     15847 Dec 11 05:38 start_atlas.sh
[2025-12-11 19:47:14] -rw-r--r-- 2 whitlerd whitlerd    592586 Dec 11 05:38 input.tar.gz
[2025-12-11 19:47:14] -rw------- 1 whitlerd whitlerd 706678072 Dec 11 19:46 HITS.pool.root.1
[2025-12-11 19:47:14] -rw------- 1 whitlerd whitlerd   7004160 Dec 11 19:47 result.tar.gz
19:47:16 (14547): run_atlas exited; CPU time 151841.094102
19:47:16 (14547): called boinc_finish(0)

</stderr_txt>
]]>

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