Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
02:53:53 (1269018): wrapper (7.7.26015): starting
02:53:53 (1269018): wrapper: running run_atlas (--nthreads 4)
[2025-12-11 02:53:53] Arguments: --nthreads 4
[2025-12-11 02:53:53] Threads: 4
[2025-12-11 02:53:53] Checking for CVMFS
[2025-12-11 02:53:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-11 02:53:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-11 02:53:54] Running cvmfs_config stat atlas.cern.ch
[2025-12-11 02:53:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-11 02:53:54] 2.13.2.0 698859 30003 65244 153874 0 76 2876713 4096000 3286 130560 0 48728810 99.928 3375424 1029 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-11 02:53:54] CVMFS is ok
[2025-12-11 02:53:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-11 02:53:54] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-11 02:53:54] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-11 02:53:54] Further information can be found at the LHC@home message board.
[2025-12-11 02:53:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-11 02:53:54] Checking for apptainer binary...
[2025-12-11 02:53:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-11 02:53:54] Running /usr/bin/apptainer --version
[2025-12-11 02:53:54] apptainer version 1.4.3
[2025-12-11 02:53:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-11 02:53:54] Taichi-Ubuntu
[2025-12-11 02:53:54] apptainer works
[2025-12-11 02:53:54] Set ATHENA_PROC_NUMBER=4
[2025-12-11 02:53:54] Set ATHENA_CORE_NUMBER=4
[2025-12-11 02:53:54] Starting ATLAS job with PandaID=6895375696
[2025-12-11 02:53:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:08:51 (14546): wrapper (7.7.26015): starting
09:08:51 (14546): wrapper: running run_atlas (--nthreads 4)
[2025-12-11 09:08:51] Arguments: --nthreads 4
[2025-12-11 09:08:51] Threads: 4
[2025-12-11 09:08:51] This job has been restarted, cleaning up previous attempt
[2025-12-11 09:08:51] Checking for CVMFS
[2025-12-11 09:08:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-11 09:08:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-11 09:08:53] Running cvmfs_config stat atlas.cern.ch
[2025-12-11 09:08:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-11 09:08:54] 2.13.2.0 15124 0 24652 153887 3 1 2970649 4096000 0 130560 0 0 100.000 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-11 09:08:54] CVMFS is ok
[2025-12-11 09:08:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-11 09:08:54] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-11 09:08:54] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-11 09:08:54] Further information can be found at the LHC@home message board.
[2025-12-11 09:08:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-11 09:08:54] Checking for apptainer binary...
[2025-12-11 09:08:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-11 09:08:54] Running /usr/bin/apptainer --version
[2025-12-11 09:08:54] apptainer version 1.4.3
[2025-12-11 09:08:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-11 09:08:54] Taichi-Ubuntu
[2025-12-11 09:08:54] apptainer works
[2025-12-11 09:08:54] Set ATHENA_PROC_NUMBER=4
[2025-12-11 09:08:54] Set ATHENA_CORE_NUMBER=4
[2025-12-11 09:08:54] Starting ATLAS job with PandaID=6895375696
[2025-12-11 09:08:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-11 22:01:45]  *** The last 200 lines of the pilot log: ***
[2025-12-11 22:01:45] 2025-12-12 03:01:11,000 | INFO     | time since job start (46320s) is within the limit (172800.0s)
[2025-12-11 22:01:45] 2025-12-12 03:01:11,949 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-11 22:01:45] 2025-12-12 03:01:11,959 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 3025.7493125
[2025-12-11 22:01:45] 2025-12-12 03:01:11,971 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/11/PanDA_Pilot-6895375696/memory_monitor_summary.json (trf name=prmon)
[2025-12-11 22:01:45] 2025-12-12 03:01:11,972 | INFO     | extracted standard info from prmon json
[2025-12-11 22:01:45] 2025-12-12 03:01:11,972 | INFO     | extracted standard memory fields from prmon json
[2025-12-11 22:01:45] 2025-12-12 03:01:11,972 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-11 22:01:45] 2025-12-12 03:01:11,988 | INFO     | fitting pss+swap vs Time
[2025-12-11 22:01:45] 2025-12-12 03:01:11,989 | INFO     | sum of square deviations: 135582300260.0
[2025-12-11 22:01:45] 2025-12-12 03:01:12,000 | INFO     | sum of deviations: 415352438875.00085
[2025-12-11 22:01:45] 2025-12-12 03:01:12,000 | INFO     | mean x: 1765485297.0
[2025-12-11 22:01:45] 2025-12-12 03:01:12,000 | INFO     | mean y: 2266993.790513834
[2025-12-11 22:01:45] 2025-12-12 03:01:12,000 | INFO     | intersect: -5406245935.262113
[2025-12-11 22:01:45] 2025-12-12 03:01:12,000 | INFO     | chi2: 4.335221725765499
[2025-12-11 22:01:45] 2025-12-12 03:01:12,001 | INFO     | sum of square deviations: 132920417792.5
[2025-12-11 22:01:45] 2025-12-12 03:01:12,007 | INFO     | sum of deviations: 572682498846.0
[2025-12-11 22:01:45] 2025-12-12 03:01:12,007 | INFO     | mean x: 1765485144.5
[2025-12-11 22:01:45] 2025-12-12 03:01:12,008 | INFO     | mean y: 2276003.193633952
[2025-12-11 22:01:45] 2025-12-12 03:01:12,008 | INFO     | intersect: -7604248720.540723
[2025-12-11 22:01:45] 2025-12-12 03:01:12,008 | INFO     | chi2: 2.2436275133275205
[2025-12-11 22:01:45] 2025-12-12 03:01:12,008 | INFO     | current chi2=2.2436275133275205 (change=48.24653373567996 %)
[2025-12-11 22:01:45] 2025-12-12 03:01:12,009 | INFO     | sum of square deviations: 130293605750.0
[2025-12-11 22:01:45] 2025-12-12 03:01:12,015 | INFO     | sum of deviations: 579337324041.0002
[2025-12-11 22:01:45] 2025-12-12 03:01:12,015 | INFO     | mean x: 1765484992.0
[2025-12-11 22:01:45] 2025-12-12 03:01:12,016 | INFO     | mean y: 2276386.1935914555
[2025-12-11 22:01:45] 2025-12-12 03:01:12,016 | INFO     | intersect: -7847773852.360244
[2025-12-11 22:01:45] 2025-12-12 03:01:12,016 | INFO     | chi2: 2.2041110204686887
[2025-12-11 22:01:45] 2025-12-12 03:01:12,016 | INFO     | current chi2=2.2041110204686887 (change=1.7612768886144117 %)
[2025-12-11 22:01:45] 2025-12-12 03:01:12,017 | INFO     | right removable region: 748
[2025-12-11 22:01:45] 2025-12-12 03:01:12,017 | INFO     | sum of square deviations: 132920417792.5
[2025-12-11 22:01:45] 2025-12-12 03:01:12,023 | INFO     | sum of deviations: 263623342570.4999
[2025-12-11 22:01:45] 2025-12-12 03:01:12,024 | INFO     | mean x: 1765485449.5
[2025-12-11 22:01:45] 2025-12-12 03:01:12,024 | INFO     | mean y: 2275669.354111406
[2025-12-11 22:01:45] 2025-12-12 03:01:12,024 | INFO     | intersect: -3499241879.1638026
[2025-12-11 22:01:45] 2025-12-12 03:01:12,024 | INFO     | chi2: 2.234405836867425
[2025-12-11 22:01:45] 2025-12-12 03:01:12,024 | INFO     | current chi2=2.234405836867425 (change=48.45924895634073 %)
[2025-12-11 22:01:45] 2025-12-12 03:01:12,025 | INFO     | sum of square deviations: 130293605750.0
[2025-12-11 22:01:45] 2025-12-12 03:01:12,031 | INFO     | sum of deviations: 242600128751.00003
[2025-12-11 22:01:45] 2025-12-12 03:01:12,031 | INFO     | mean x: 1765485602.0
[2025-12-11 22:01:45] 2025-12-12 03:01:12,031 | INFO     | mean y: 2276889.8825100134
[2025-12-11 22:01:45] 2025-12-12 03:01:12,031 | INFO     | intersect: -3284968342.8194547
[2025-12-11 22:01:45] 2025-12-12 03:01:12,032 | INFO     | chi2: 2.2178001818767066
[2025-12-11 22:01:45] 2025-12-12 03:01:12,032 | INFO     | current chi2=2.2178001818767066 (change=0.7431798967191644 %)
[2025-12-11 22:01:45] 2025-12-12 03:01:12,032 | INFO     | left removable region: 20
[2025-12-11 22:01:45] 2025-12-12 03:01:12,033 | INFO     | sum of square deviations: 119638715742.0
[2025-12-11 22:01:45] 2025-12-12 03:01:12,044 | INFO     | sum of deviations: 366564474846.0
[2025-12-11 22:01:45] 2025-12-12 03:01:12,044 | INFO     | mean x: 1765485571.5
[2025-12-11 22:01:45] 2025-12-12 03:01:12,044 | INFO     | mean y: 2288868.868131868
[2025-12-11 22:01:45] 2025-12-12 03:01:12,045 | INFO     | intersect: -5407032748.731749
[2025-12-11 22:01:45] 2025-12-12 03:01:12,046 | INFO     | chi2: 0.05055506582439657
[2025-12-11 22:01:45] 2025-12-12 03:01:12,046 | INFO     | current memory leak: 3.06 B/s (using 728 data points, chi2=0.05)
[2025-12-11 22:01:45] 2025-12-12 03:01:12,048 | INFO     | could have reported an average CPU frequency of 3154 MHz (29 samples)
[2025-12-11 22:01:45] 2025-12-12 03:01:12,048 | INFO     | ..............................
[2025-12-11 22:01:45] 2025-12-12 03:01:12,048 | INFO     | . Timing measurements:
[2025-12-11 22:01:45] 2025-12-12 03:01:12,048 | INFO     | . get job = 0 s
[2025-12-11 22:01:45] 2025-12-12 03:01:12,048 | INFO     | . initial setup = 3 s
[2025-12-11 22:01:45] 2025-12-12 03:01:12,049 | INFO     | . payload setup = 6 s
[2025-12-11 22:01:45] 2025-12-12 03:01:12,049 | INFO     | . stage-in = 0 s
[2025-12-11 22:01:45] 2025-12-12 03:01:12,049 | INFO     | . payload execution = 46285 s
[2025-12-11 22:01:45] 2025-12-12 03:01:12,049 | INFO     | . stage-out = 3 s
[2025-12-11 22:01:45] 2025-12-12 03:01:12,049 | INFO     | . log creation = 0 s
[2025-12-11 22:01:45] 2025-12-12 03:01:12,049 | INFO     | ..............................
[2025-12-11 22:01:45] 2025-12-12 03:01:12,118 | INFO     | 
[2025-12-11 22:01:45] 2025-12-12 03:01:12,119 | INFO     | job summary report
[2025-12-11 22:01:45] 2025-12-12 03:01:12,119 | INFO     | --------------------------------------------------
[2025-12-11 22:01:45] 2025-12-12 03:01:12,119 | INFO     | PanDA job id: 6895375696
[2025-12-11 22:01:45] 2025-12-12 03:01:12,119 | INFO     | task id: 47556137
[2025-12-11 22:01:45] 2025-12-12 03:01:12,119 | INFO     | errors: (none)
[2025-12-11 22:01:45] 2025-12-12 03:01:12,119 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-11 22:01:45] 2025-12-12 03:01:12,119 | INFO     | pilot state: finished 
[2025-12-11 22:01:45] 2025-12-12 03:01:12,120 | INFO     | transexitcode: 0
[2025-12-11 22:01:45] 2025-12-12 03:01:12,120 | INFO     | exeerrorcode: 0
[2025-12-11 22:01:45] 2025-12-12 03:01:12,120 | INFO     | exeerrordiag: 
[2025-12-11 22:01:45] 2025-12-12 03:01:12,120 | INFO     | exitcode: 0
[2025-12-11 22:01:45] 2025-12-12 03:01:12,120 | INFO     | exitmsg: OK
[2025-12-11 22:01:45] 2025-12-12 03:01:12,120 | INFO     | cpuconsumptiontime: 184104 s
[2025-12-11 22:01:45] 2025-12-12 03:01:12,120 | INFO     | nevents: 1000
[2025-12-11 22:01:45] 2025-12-12 03:01:12,120 | INFO     | neventsw: 0
[2025-12-11 22:01:45] 2025-12-12 03:01:12,120 | INFO     | pid: 70166
[2025-12-11 22:01:45] 2025-12-12 03:01:12,120 | INFO     | pgrp: 70166
[2025-12-11 22:01:45] 2025-12-12 03:01:12,121 | INFO     | corecount: 4
[2025-12-11 22:01:45] 2025-12-12 03:01:12,121 | INFO     | event service: False
[2025-12-11 22:01:45] 2025-12-12 03:01:12,121 | INFO     | sizes: {0: 2284158, 1: 2284357, 5: 2284619, 11: 2284675, 46295: 2330983, 46299: 2340191, 46304: 2340381}
[2025-12-11 22:01:45] 2025-12-12 03:01:12,121 | INFO     | --------------------------------------------------
[2025-12-11 22:01:45] 2025-12-12 03:01:12,121 | INFO     | 
[2025-12-11 22:01:45] 2025-12-12 03:01:12,121 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/11
[2025-12-11 22:01:45] 2025-12-12 03:01:12,151 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-11 22:01:45] 2025-12-12 03:01:12,151 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-11 22:01:45] 2025-12-12 03:01:12,152 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-11 22:01:45] 2025-12-12 03:01:12,152 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-11 22:01:45] 2025-12-12 03:01:12,152 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-11 22:01:45] 2025-12-12 03:01:12,152 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-11 22:01:45] 2025-12-12 03:01:12,152 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-11 22:01:45] 2025-12-12 03:01:12,152 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-11 22:01:45] 2025-12-12 03:01:12,152 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-11 22:01:45] 2025-12-12 03:01:12,152 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-11 22:01:45] 2025-12-12 03:01:12,152 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-11 22:01:45] 2025-12-12 03:01:12,153 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-11 22:01:45] 2025-12-12 03:01:12,153 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-11 22:01:45] 2025-12-12 03:01:12,153 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-11 22:01:45] 2025-12-12 03:01:12,153 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-11 22:01:45] 2025-12-12 03:01:12,154 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-11 22:01:45] 2025-12-12 03:01:12,154 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-11 22:01:45] 2025-12-12 03:01:12,154 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-11 22:01:45] 2025-12-12 03:01:12,154 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-11 22:01:45] 2025-12-12 03:01:12,154 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-11 22:01:45] 2025-12-12 03:01:12,155 | INFO     | job 6895375696 has completed (purged errors)
[2025-12-11 22:01:45] 2025-12-12 03:01:12,155 | INFO     | overall cleanup function is called
[2025-12-11 22:01:45] 2025-12-12 03:01:12,390 | INFO     | PID=34739 has CPU usage=12.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-11 22:01:45] 2025-12-12 03:01:12,390 | INFO     | .. there are 5 such processes running
[2025-12-11 22:01:45] 2025-12-12 03:01:13,177 | INFO     | --- collectZombieJob: --- 10, [70166]
[2025-12-11 22:01:45] 2025-12-12 03:01:13,177 | INFO     | zombie collector waiting for pid 70166
[2025-12-11 22:01:45] 2025-12-12 03:01:13,177 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-11 22:01:45] 2025-12-12 03:01:13,178 | INFO     | collected zombie processes
[2025-12-11 22:01:45] 2025-12-12 03:01:13,178 | INFO     | will attempt to kill all subprocesses of pid=70166
[2025-12-11 22:01:45] 2025-12-12 03:01:13,441 | INFO     | process IDs to be killed: [70166] (in reverse order)
[2025-12-11 22:01:45] 2025-12-12 03:01:13,517 | WARNING  | found no corresponding commands to process id(s)
[2025-12-11 22:01:45] 2025-12-12 03:01:13,518 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-11 22:01:45] 2025-12-12 03:01:13,528 | INFO     | did not find any defunct processes belonging to 70166
[2025-12-11 22:01:45] 2025-12-12 03:01:13,537 | INFO     | did not find any defunct processes belonging to 70166
[2025-12-11 22:01:45] 2025-12-12 03:01:13,539 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-11 22:01:45] 2025-12-12 03:01:13,539 | INFO     | ready for new job
[2025-12-11 22:01:45] 2025-12-12 03:01:13,539 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-11 22:01:45] 2025-12-12 03:01:13,545 | INFO     | ***************************************
[2025-12-11 22:01:45] 2025-12-12 03:01:13,545 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-11 22:01:45] 2025-12-12 03:01:13,545 | INFO     | ***************************************
[2025-12-11 22:01:45] 2025-12-12 03:01:13,545 | INFO     | 
[2025-12-11 22:01:45] 2025-12-12 03:01:13,548 | INFO     | architecture information:
[2025-12-11 22:01:45] 2025-12-12 03:01:13,549 | INFO     | executing command: cat /etc/os-release
[2025-12-11 22:01:45] 2025-12-12 03:01:13,563 | INFO     | cat /etc/os-release:
[2025-12-11 22:01:45] NAME="CentOS Linux"
[2025-12-11 22:01:45] VERSION="7 (Core)"
[2025-12-11 22:01:45] ID="centos"
[2025-12-11 22:01:45] ID_LIKE="rhel fedora"
[2025-12-11 22:01:45] VERSION_ID="7"
[2025-12-11 22:01:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-11 22:01:45] ANSI_COLOR="0;31"
[2025-12-11 22:01:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-11 22:01:45] HOME_URL="https://www.centos.org/"
[2025-12-11 22:01:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-11 22:01:45] 
[2025-12-11 22:01:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-11 22:01:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-11 22:01:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-11 22:01:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-11 22:01:45] 
[2025-12-11 22:01:45] 2025-12-12 03:01:13,564 | INFO     | ***************************************
[2025-12-11 22:01:45] 2025-12-12 03:01:14,067 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/11
[2025-12-11 22:01:45] 2025-12-12 03:01:14,086 | INFO     | sufficient remaining disk space (372563247104 B)
[2025-12-11 22:01:45] 2025-12-12 03:01:14,087 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-11 22:01:45] 2025-12-12 03:01:14,087 | INFO     | current server update state: UPDATING_FINAL
[2025-12-11 22:01:45] 2025-12-12 03:01:14,087 | INFO     | update_server=False
[2025-12-11 22:01:45] 2025-12-12 03:01:14,087 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-11 22:01:45] 2025-12-12 03:01:14,088 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-11 22:01:45] 2025-12-12 03:01:14,088 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-11 22:01:45] 2025-12-12 03:01:14,088 | INFO     | aborting loop
[2025-12-11 22:01:45] 2025-12-12 03:01:14,262 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-11 22:01:45] 2025-12-12 03:01:15,030 | INFO     | all data control threads have been joined
[2025-12-11 22:01:45] 2025-12-12 03:01:15,060 | INFO     | all payload control threads have been joined
[2025-12-11 22:01:45] 2025-12-12 03:01:15,093 | INFO     | [job] retrieve thread has finished
[2025-12-11 22:01:45] 2025-12-12 03:01:15,094 | INFO     | [job] queue monitor thread has finished
[2025-12-11 22:01:45] 2025-12-12 03:01:15,094 | INFO     | [job] job monitor thread has finished
[2025-12-11 22:01:45] 2025-12-12 03:01:15,116 | INFO     | all job control threads have been joined
[2025-12-11 22:01:45] 2025-12-12 03:01:15,313 | INFO     | [payload] execute_payloads thread has finished
[2025-12-11 22:01:45] 2025-12-12 03:01:15,657 | INFO     | [job] create_data_payload thread has finished
[2025-12-11 22:01:45] 2025-12-12 03:01:15,682 | INFO     | [payload] validate_pre thread has finished
[2025-12-11 22:01:45] 2025-12-12 03:01:15,725 | INFO     | [payload] failed_post thread has finished
[2025-12-11 22:01:45] 2025-12-12 03:01:15,782 | INFO     | [job] validate thread has finished
[2025-12-11 22:01:45] 2025-12-12 03:01:15,783 | INFO     | [data] copytool_in thread has finished
[2025-12-11 22:01:45] 2025-12-12 03:01:16,008 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-11 22:01:45] 2025-12-12 03:01:16,036 | INFO     | [data] control thread has finished
[2025-12-11 22:01:45] 2025-12-12 03:01:16,065 | INFO     | [payload] control thread has finished
[2025-12-11 22:01:45] 2025-12-12 03:01:16,122 | INFO     | [job] control thread has finished
[2025-12-11 22:01:45] 2025-12-12 03:01:16,268 | INFO     | [data] copytool_out thread has finished
[2025-12-11 22:01:45] 2025-12-12 03:01:16,339 | INFO     | [payload] validate_post thread has finished
[2025-12-11 22:01:45] 2025-12-12 03:01:16,844 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-11 22:01:45] 2025-12-12 03:01:18,851 | INFO     | [monitor] cgroup control has ended
[2025-12-11 22:01:45] 2025-12-12 03:01:20,851 | INFO     | [data] queue_monitor thread has finished
[2025-12-11 22:01:45] 2025-12-12 03:01:22,366 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140137159014208)>', '<ExcThread(monitor, started 140136394258176)>']
[2025-12-11 22:01:45] 2025-12-12 03:01:27,392 | INFO     | all workflow threads have been joined
[2025-12-11 22:01:45] 2025-12-12 03:01:27,392 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-11 22:01:45] 2025-12-12 03:01:27,393 | INFO     | traces error code: 0
[2025-12-11 22:01:45] 2025-12-12 03:01:27,393 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-11 22:01:45] 2025-12-12 03:01:44,734 | INFO     | PID=34739 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-11 22:01:45] 2025-12-12 03:01:44,735 | INFO     | .. there are 5 such processes running
[2025-12-11 22:01:45] 2025-12-12 03:01:44,735 | INFO     | found 0 job(s) in 20 queues
[2025-12-11 22:01:45] 2025-12-12 03:01:44,735 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-11 22:01:45] 2025-12-12 03:01:44,735 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-11 22:01:45] 2025-12-12 03:01:44,735 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-11 22:01:45] 2025-12-12 03:01:44,736 | INFO     | [monitor] control thread has ended
[2025-12-11 22:01:45] 2025-12-12 03:01:44,906 [wrapper] ==== pilot stdout END ====
[2025-12-11 22:01:45] 2025-12-12 03:01:44,910 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-11 22:01:45] 2025-12-12 03:01:44,913 [wrapper] pilotpid: 34739
[2025-12-11 22:01:45] 2025-12-12 03:01:44,916 [wrapper] Pilot exit status: 0
[2025-12-11 22:01:45] 2025-12-12 03:01:44,931 [wrapper] pandaids: 6895375696 6895375696
[2025-12-11 22:01:45] 2025-12-12 03:01:44,989 [wrapper] cleanup supervisor_pilot  595575 34742
[2025-12-11 22:01:45] 2025-12-12 03:01:44,993 [wrapper] Test setup, not cleaning
[2025-12-11 22:01:45] 2025-12-12 03:01:44,997 [wrapper] apfmon messages muted
[2025-12-11 22:01:45] 2025-12-12 03:01:45,001 [wrapper] ==== wrapper stdout END ====
[2025-12-11 22:01:45] 2025-12-12 03:01:45,004 [wrapper] ==== wrapper stderr END ====
[2025-12-11 22:01:45]  *** Error codes and diagnostics ***
[2025-12-11 22:01:45]     "exeErrorCode": 0,
[2025-12-11 22:01:45]     "exeErrorDiag": "",
[2025-12-11 22:01:45]     "pilotErrorCode": 0,
[2025-12-11 22:01:45]     "pilotErrorDiag": "",
[2025-12-11 22:01:45]  *** Listing of results directory ***
[2025-12-11 22:01:45] total 1708772
[2025-12-11 22:01:45] drwx------ 5 whitlerd whitlerd      4096 Nov  5 12:16 pilot3
[2025-12-11 22:01:45] -rw-r--r-- 1 whitlerd whitlerd    576529 Nov 23 19:08 pilot3.tar.gz
[2025-12-11 22:01:45] -rwx------ 1 whitlerd whitlerd     36292 Nov 23 19:08 runpilot2-wrapper.sh
[2025-12-11 22:01:45] -rw-r--r-- 1 whitlerd whitlerd      5112 Nov 23 19:08 queuedata.json
[2025-12-11 22:01:45] -rw-rw-r-- 1 whitlerd whitlerd       100 Dec 11 02:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-11 22:01:45] -rwxr-xr-x 1 whitlerd whitlerd      7986 Dec 11 02:53 run_atlas
[2025-12-11 22:01:45] -rw-rw-r-- 1 whitlerd whitlerd       105 Dec 11 02:53 job.xml
[2025-12-11 22:01:45] -rw-r--r-- 3 whitlerd whitlerd 407842769 Dec 11 02:53 EVNT.47483658._000956.pool.root.1
[2025-12-11 22:01:45] -rw-r--r-- 3 whitlerd whitlerd 407842769 Dec 11 02:53 ATLAS.root_0
[2025-12-11 22:01:45] drwxrwx--x 2 whitlerd whitlerd      4096 Dec 11 02:53 shared
[2025-12-11 22:01:45] -rw-r--r-- 2 whitlerd whitlerd    590097 Dec 11 02:53 input.tar.gz
[2025-12-11 22:01:45] -rw-r--r-- 2 whitlerd whitlerd     15847 Dec 11 02:53 start_atlas.sh
[2025-12-11 22:01:45] -rw-rw-r-- 1 whitlerd whitlerd         0 Dec 11 02:53 boinc_setup_complete
[2025-12-11 22:01:45] -rw-rw-r-- 1 whitlerd whitlerd         0 Dec 11 02:53 boinc_lockfile
[2025-12-11 22:01:45] -rw-rw-r-- 1 whitlerd whitlerd      9356 Dec 11 09:08 init_data.xml
[2025-12-11 22:01:45] -rw-rw-r-- 1 whitlerd whitlerd      2785 Dec 11 09:08 pandaJob.out
[2025-12-11 22:01:45] -rw------- 1 whitlerd whitlerd    988866 Dec 11 09:09 agis_schedconf.cvmfs.json
[2025-12-11 22:01:45] -rw-rw-r-- 1 whitlerd whitlerd       533 Dec 11 21:54 boinc_task_state.xml
[2025-12-11 22:01:45] -rw------- 1 whitlerd whitlerd 913959980 Dec 11 22:00 HITS.47556137._009427.pool.root.1
[2025-12-11 22:01:45] -rw------- 1 whitlerd whitlerd      1055 Dec 11 22:00 memory_monitor_summary.json
[2025-12-11 22:01:45] -rw------- 1 whitlerd whitlerd   1516240 Dec 11 22:01 agis_ddmendpoints.agis.ALL.json
[2025-12-11 22:01:45] -rw------- 1 whitlerd whitlerd   1549999 Dec 11 22:01 log.47556137._009427.job.log.tgz.1
[2025-12-11 22:01:45] -rw------- 1 whitlerd whitlerd      8603 Dec 11 22:01 heartbeat.json
[2025-12-11 22:01:45] -rw-rw-r-- 1 whitlerd whitlerd      8192 Dec 11 22:01 boinc_mmap_file
[2025-12-11 22:01:45] -rw-rw-r-- 1 whitlerd whitlerd        29 Dec 11 22:01 wrapper_checkpoint.txt
[2025-12-11 22:01:45] -rw------- 1 whitlerd whitlerd        96 Dec 11 22:01 pilot_heartbeat.json
[2025-12-11 22:01:45] -rw------- 1 whitlerd whitlerd       820 Dec 11 22:01 pilotlog.txt
[2025-12-11 22:01:45] -rw------- 1 whitlerd whitlerd   6560853 Dec 11 22:01 log.47556137._009427.job.log.1
[2025-12-11 22:01:45] -rw------- 1 whitlerd whitlerd       353 Dec 11 22:01 output.list
[2025-12-11 22:01:45] -rw-rw-r-- 1 whitlerd whitlerd       620 Dec 11 22:01 runtime_log
[2025-12-11 22:01:45] -rw------- 1 whitlerd whitlerd   8130560 Dec 11 22:01 result.tar.gz
[2025-12-11 22:01:45] -rw-rw-r-- 1 whitlerd whitlerd      9127 Dec 11 22:01 runtime_log.err
[2025-12-11 22:01:45] -rw------- 1 whitlerd whitlerd       786 Dec 11 22:01 MpsMDm7IZh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmiqIKDm1LwgAn.diag
[2025-12-11 22:01:45] -rw-rw-r-- 1 whitlerd whitlerd     23610 Dec 11 22:01 stderr.txt
[2025-12-11 22:01:45] HITS file was successfully produced:
[2025-12-11 22:01:45] -rw------- 1 whitlerd whitlerd 913959980 Dec 11 22:00 shared/HITS.pool.root.1
[2025-12-11 22:01:45]  *** Contents of shared directory: ***
[2025-12-11 22:01:45] total 1299368
[2025-12-11 22:01:45] -rw-r--r-- 3 whitlerd whitlerd 407842769 Dec 11 02:53 ATLAS.root_0
[2025-12-11 22:01:45] -rw-r--r-- 2 whitlerd whitlerd    590097 Dec 11 02:53 input.tar.gz
[2025-12-11 22:01:45] -rw-r--r-- 2 whitlerd whitlerd     15847 Dec 11 02:53 start_atlas.sh
[2025-12-11 22:01:45] -rw------- 1 whitlerd whitlerd 913959980 Dec 11 22:00 HITS.pool.root.1
[2025-12-11 22:01:45] -rw------- 1 whitlerd whitlerd   8130560 Dec 11 22:01 result.tar.gz
22:01:46 (14546): run_atlas exited; CPU time 184705.044869
22:01:46 (14546): called boinc_finish(0)

</stderr_txt>
]]>

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