Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
01:26:34 (1184575): wrapper (7.7.26015): starting
01:26:34 (1184575): wrapper: running run_atlas (--nthreads 4)
[2025-12-11 01:26:34] Arguments: --nthreads 4
[2025-12-11 01:26:34] Threads: 4
[2025-12-11 01:26:34] Checking for CVMFS
[2025-12-11 01:26:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-11 01:26:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-11 01:26:34] Running cvmfs_config stat atlas.cern.ch
[2025-12-11 01:26:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-11 01:26:34] 2.13.2.0 698859 29916 66456 153872 3 76 2860376 4096001 3333 130560 0 48517993 99.927 3372625 1030 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-11 01:26:34] CVMFS is ok
[2025-12-11 01:26:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-11 01:26:34] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-11 01:26:34] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-11 01:26:34] Further information can be found at the LHC@home message board.
[2025-12-11 01:26:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-11 01:26:34] Checking for apptainer binary...
[2025-12-11 01:26:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-11 01:26:34] Running /usr/bin/apptainer --version
[2025-12-11 01:26:34] apptainer version 1.4.3
[2025-12-11 01:26:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-11 01:26:34] Taichi-Ubuntu
[2025-12-11 01:26:34] apptainer works
[2025-12-11 01:26:34] Set ATHENA_PROC_NUMBER=4
[2025-12-11 01:26:34] Set ATHENA_CORE_NUMBER=4
[2025-12-11 01:26:34] Starting ATLAS job with PandaID=6925385228
[2025-12-11 01:26:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:08:51 (14545): wrapper (7.7.26015): starting
09:08:51 (14545): wrapper: running run_atlas (--nthreads 4)
[2025-12-11 09:08:51] Arguments: --nthreads 4
[2025-12-11 09:08:51] Threads: 4
[2025-12-11 09:08:51] This job has been restarted, cleaning up previous attempt
[2025-12-11 09:08:51] Checking for CVMFS
[2025-12-11 09:08:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-11 09:08:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-11 09:08:53] Running cvmfs_config stat atlas.cern.ch
[2025-12-11 09:08:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-11 09:08:54] 2.13.2.0 15124 0 24652 153887 3 1 2970649 4096000 0 130560 0 0 100.000 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-11 09:08:54] CVMFS is ok
[2025-12-11 09:08:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-11 09:08:54] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-11 09:08:54] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-11 09:08:54] Further information can be found at the LHC@home message board.
[2025-12-11 09:08:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-11 09:08:54] Checking for apptainer binary...
[2025-12-11 09:08:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-11 09:08:54] Running /usr/bin/apptainer --version
[2025-12-11 09:08:54] apptainer version 1.4.3
[2025-12-11 09:08:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-11 09:08:54] Taichi-Ubuntu
[2025-12-11 09:08:54] apptainer works
[2025-12-11 09:08:54] Set ATHENA_PROC_NUMBER=4
[2025-12-11 09:08:54] Set ATHENA_CORE_NUMBER=4
[2025-12-11 09:08:54] Starting ATLAS job with PandaID=6925385228
[2025-12-11 09:08:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-11 16:55:59]  *** The last 200 lines of the pilot log: ***
[2025-12-11 16:55:59] 2025-12-11 21:55:01,827 | INFO     | time since job start (27950s) is within the limit (174528.0s)
[2025-12-11 16:55:59] 2025-12-11 21:55:02,529 | INFO     | monitor loop #2054: job 0:6925385228 is in state 'finished'
[2025-12-11 16:55:59] 2025-12-11 21:55:02,530 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-11 16:55:59] 2025-12-11 21:55:03,833 | INFO     | time since job start (27952s) is within the limit (174528.0s)
[2025-12-11 16:55:59] 2025-12-11 21:55:03,928 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-11 16:55:59] 2025-12-11 21:55:03,937 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 3015.793729166667
[2025-12-11 16:55:59] 2025-12-11 21:55:03,947 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/7/PanDA_Pilot-6925385228/memory_monitor_summary.json (trf name=prmon)
[2025-12-11 16:55:59] 2025-12-11 21:55:03,948 | INFO     | extracted standard info from prmon json
[2025-12-11 16:55:59] 2025-12-11 21:55:03,948 | INFO     | extracted standard memory fields from prmon json
[2025-12-11 16:55:59] 2025-12-11 21:55:03,948 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-11 16:55:59] 2025-12-11 21:55:03,955 | INFO     | fitting pss+swap vs Time
[2025-12-11 16:55:59] 2025-12-11 21:55:03,956 | INFO     | sum of square deviations: 29790156694.5
[2025-12-11 16:55:59] 2025-12-11 21:55:03,960 | INFO     | sum of deviations: 235437238703.99997
[2025-12-11 16:55:59] 2025-12-11 21:55:03,960 | INFO     | mean x: 1765476120.5
[2025-12-11 16:55:59] 2025-12-11 21:55:03,960 | INFO     | mean y: 2636859.0480349343
[2025-12-11 16:55:59] 2025-12-11 21:55:03,960 | INFO     | intersect: -13950254596.709606
[2025-12-11 16:55:59] 2025-12-11 21:55:03,961 | INFO     | chi2: 3.877715305939554
[2025-12-11 16:55:59] 2025-12-11 21:55:03,961 | INFO     | sum of square deviations: 28825106042.0
[2025-12-11 16:55:59] 2025-12-11 21:55:03,965 | INFO     | sum of deviations: 316752925143.99994
[2025-12-11 16:55:59] 2025-12-11 21:55:03,965 | INFO     | mean x: 1765475968.0
[2025-12-11 16:55:59] 2025-12-11 21:55:03,965 | INFO     | mean y: 2649657.876379691
[2025-12-11 16:55:59] 2025-12-11 21:55:03,966 | INFO     | intersect: -19397788152.156876
[2025-12-11 16:55:59] 2025-12-11 21:55:03,966 | INFO     | chi2: 2.296766613471149
[2025-12-11 16:55:59] 2025-12-11 21:55:03,966 | INFO     | current chi2=2.296766613471149 (change=40.77010733734998 %)
[2025-12-11 16:55:59] 2025-12-11 21:55:03,967 | INFO     | sum of square deviations: 27881125552.0
[2025-12-11 16:55:59] 2025-12-11 21:55:03,971 | INFO     | sum of deviations: 311368264183.5
[2025-12-11 16:55:59] 2025-12-11 21:55:03,971 | INFO     | mean x: 1765475815.5
[2025-12-11 16:55:59] 2025-12-11 21:55:03,972 | INFO     | mean y: 2648788.0691964286
[2025-12-11 16:55:59] 2025-12-11 21:55:03,972 | INFO     | intersect: -19713669303.355614
[2025-12-11 16:55:59] 2025-12-11 21:55:03,972 | INFO     | chi2: 2.2955015938082584
[2025-12-11 16:55:59] 2025-12-11 21:55:03,972 | INFO     | current chi2=2.2955015938082584 (change=0.05507828507567207 %)
[2025-12-11 16:55:59] 2025-12-11 21:55:03,972 | INFO     | right removable region: 447
[2025-12-11 16:55:59] 2025-12-11 21:55:03,973 | INFO     | sum of square deviations: 28825106042.0
[2025-12-11 16:55:59] 2025-12-11 21:55:03,977 | INFO     | sum of deviations: 125956793487.00002
[2025-12-11 16:55:59] 2025-12-11 21:55:03,977 | INFO     | mean x: 1765476273.0
[2025-12-11 16:55:59] 2025-12-11 21:55:03,977 | INFO     | mean y: 2654103.3554083887
[2025-12-11 16:55:59] 2025-12-11 21:55:03,977 | INFO     | intersect: -7711930883.789023
[2025-12-11 16:55:59] 2025-12-11 21:55:03,978 | INFO     | chi2: 1.6392725290761248
[2025-12-11 16:55:59] 2025-12-11 21:55:03,978 | INFO     | current chi2=1.6392725290761248 (change=57.72581533860346 %)
[2025-12-11 16:55:59] 2025-12-11 21:55:03,978 | INFO     | sum of square deviations: 27881125552.0
[2025-12-11 16:55:59] 2025-12-11 21:55:03,981 | INFO     | sum of deviations: 113590455728.49995
[2025-12-11 16:55:59] 2025-12-11 21:55:03,981 | INFO     | mean x: 1765476425.5
[2025-12-11 16:55:59] 2025-12-11 21:55:03,981 | INFO     | mean y: 2656101.2120535714
[2025-12-11 16:55:59] 2025-12-11 21:55:03,981 | INFO     | intersect: -7190069005.112883
[2025-12-11 16:55:59] 2025-12-11 21:55:03,982 | INFO     | chi2: 1.6312228714695092
[2025-12-11 16:55:59] 2025-12-11 21:55:03,982 | INFO     | current chi2=1.6312228714695092 (change=0.491050601034123 %)
[2025-12-11 16:55:59] 2025-12-11 21:55:03,982 | INFO     | left removable region: 20
[2025-12-11 16:55:59] 2025-12-11 21:55:03,982 | INFO     | sum of square deviations: 24141245198.0
[2025-12-11 16:55:59] 2025-12-11 21:55:03,985 | INFO     | sum of deviations: 167023115398.9999
[2025-12-11 16:55:59] 2025-12-11 21:55:03,985 | INFO     | mean x: 1765476395.0
[2025-12-11 16:55:59] 2025-12-11 21:55:03,985 | INFO     | mean y: 2672596.0468384074
[2025-12-11 16:55:59] 2025-12-11 21:55:03,985 | INFO     | intersect: -12211915559.52703
[2025-12-11 16:55:59] 2025-12-11 21:55:03,985 | INFO     | chi2: 0.018136498449963342
[2025-12-11 16:55:59] 2025-12-11 21:55:03,985 | INFO     | current memory leak: 6.92 B/s (using 427 data points, chi2=0.02)
[2025-12-11 16:55:59] 2025-12-11 21:55:03,986 | INFO     | could have reported an average CPU frequency of 3193 MHz (19 samples)
[2025-12-11 16:55:59] 2025-12-11 21:55:03,986 | INFO     | ..............................
[2025-12-11 16:55:59] 2025-12-11 21:55:03,986 | INFO     | . Timing measurements:
[2025-12-11 16:55:59] 2025-12-11 21:55:03,986 | INFO     | . get job = 0 s
[2025-12-11 16:55:59] 2025-12-11 21:55:03,986 | INFO     | . initial setup = 3 s
[2025-12-11 16:55:59] 2025-12-11 21:55:03,986 | INFO     | . payload setup = 10 s
[2025-12-11 16:55:59] 2025-12-11 21:55:03,986 | INFO     | . stage-in = 0 s
[2025-12-11 16:55:59] 2025-12-11 21:55:03,986 | INFO     | . payload execution = 27908 s
[2025-12-11 16:55:59] 2025-12-11 21:55:03,986 | INFO     | . stage-out = 3 s
[2025-12-11 16:55:59] 2025-12-11 21:55:03,986 | INFO     | . log creation = 0 s
[2025-12-11 16:55:59] 2025-12-11 21:55:03,986 | INFO     | ..............................
[2025-12-11 16:55:59] 2025-12-11 21:55:04,052 | INFO     | 
[2025-12-11 16:55:59] 2025-12-11 21:55:04,052 | INFO     | job summary report
[2025-12-11 16:55:59] 2025-12-11 21:55:04,052 | INFO     | --------------------------------------------------
[2025-12-11 16:55:59] 2025-12-11 21:55:04,052 | INFO     | PanDA job id: 6925385228
[2025-12-11 16:55:59] 2025-12-11 21:55:04,052 | INFO     | task id: 47860572
[2025-12-11 16:55:59] 2025-12-11 21:55:04,053 | INFO     | errors: (none)
[2025-12-11 16:55:59] 2025-12-11 21:55:04,053 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-11 16:55:59] 2025-12-11 21:55:04,053 | INFO     | pilot state: finished 
[2025-12-11 16:55:59] 2025-12-11 21:55:04,053 | INFO     | transexitcode: 0
[2025-12-11 16:55:59] 2025-12-11 21:55:04,053 | INFO     | exeerrorcode: 0
[2025-12-11 16:55:59] 2025-12-11 21:55:04,053 | INFO     | exeerrordiag: 
[2025-12-11 16:55:59] 2025-12-11 21:55:04,053 | INFO     | exitcode: 0
[2025-12-11 16:55:59] 2025-12-11 21:55:04,053 | INFO     | exitmsg: OK
[2025-12-11 16:55:59] 2025-12-11 21:55:04,053 | INFO     | cpuconsumptiontime: 110751 s
[2025-12-11 16:55:59] 2025-12-11 21:55:04,053 | INFO     | nevents: 1000
[2025-12-11 16:55:59] 2025-12-11 21:55:04,053 | INFO     | neventsw: 0
[2025-12-11 16:55:59] 2025-12-11 21:55:04,053 | INFO     | pid: 85240
[2025-12-11 16:55:59] 2025-12-11 21:55:04,053 | INFO     | pgrp: 85240
[2025-12-11 16:55:59] 2025-12-11 21:55:04,054 | INFO     | corecount: 4
[2025-12-11 16:55:59] 2025-12-11 21:55:04,054 | INFO     | event service: False
[2025-12-11 16:55:59] 2025-12-11 21:55:04,054 | INFO     | sizes: {0: 2284363, 1: 2284562, 5: 2284824, 11: 2284880, 27922: 2341966, 27926: 2350988, 27929: 2351172, 27936: 2351418}
[2025-12-11 16:55:59] 2025-12-11 21:55:04,054 | INFO     | --------------------------------------------------
[2025-12-11 16:55:59] 2025-12-11 21:55:04,054 | INFO     | 
[2025-12-11 16:55:59] 2025-12-11 21:55:04,054 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/7
[2025-12-11 16:55:59] 2025-12-11 21:55:04,078 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-11 16:55:59] 2025-12-11 21:55:04,079 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-11 16:55:59] 2025-12-11 21:55:04,079 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-11 16:55:59] 2025-12-11 21:55:04,079 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-11 16:55:59] 2025-12-11 21:55:04,079 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-11 16:55:59] 2025-12-11 21:55:04,079 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-11 16:55:59] 2025-12-11 21:55:04,079 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-11 16:55:59] 2025-12-11 21:55:04,079 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-11 16:55:59] 2025-12-11 21:55:04,080 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-11 16:55:59] 2025-12-11 21:55:04,080 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-11 16:55:59] 2025-12-11 21:55:04,080 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-11 16:55:59] 2025-12-11 21:55:04,080 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-11 16:55:59] 2025-12-11 21:55:04,080 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-11 16:55:59] 2025-12-11 21:55:04,080 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-11 16:55:59] 2025-12-11 21:55:04,080 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-11 16:55:59] 2025-12-11 21:55:04,080 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-11 16:55:59] 2025-12-11 21:55:04,080 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-11 16:55:59] 2025-12-11 21:55:04,080 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-11 16:55:59] 2025-12-11 21:55:04,080 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-11 16:55:59] 2025-12-11 21:55:04,081 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-11 16:55:59] 2025-12-11 21:55:04,081 | INFO     | job 6925385228 has completed (purged errors)
[2025-12-11 16:55:59] 2025-12-11 21:55:04,081 | INFO     | overall cleanup function is called
[2025-12-11 16:55:59] 2025-12-11 21:55:05,099 | INFO     | --- collectZombieJob: --- 10, [85240]
[2025-12-11 16:55:59] 2025-12-11 21:55:05,099 | INFO     | zombie collector waiting for pid 85240
[2025-12-11 16:55:59] 2025-12-11 21:55:05,099 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-11 16:55:59] 2025-12-11 21:55:05,100 | INFO     | collected zombie processes
[2025-12-11 16:55:59] 2025-12-11 21:55:05,100 | INFO     | will attempt to kill all subprocesses of pid=85240
[2025-12-11 16:55:59] 2025-12-11 21:55:05,325 | INFO     | process IDs to be killed: [85240] (in reverse order)
[2025-12-11 16:55:59] 2025-12-11 21:55:05,395 | WARNING  | found no corresponding commands to process id(s)
[2025-12-11 16:55:59] 2025-12-11 21:55:05,395 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-11 16:55:59] 2025-12-11 21:55:05,404 | INFO     | did not find any defunct processes belonging to 85240
[2025-12-11 16:55:59] 2025-12-11 21:55:05,413 | INFO     | did not find any defunct processes belonging to 85240
[2025-12-11 16:55:59] 2025-12-11 21:55:05,413 | INFO     | ready for new job
[2025-12-11 16:55:59] 2025-12-11 21:55:05,413 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-11 16:55:59] 2025-12-11 21:55:05,417 | INFO     | ***************************************
[2025-12-11 16:55:59] 2025-12-11 21:55:05,418 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-11 16:55:59] 2025-12-11 21:55:05,418 | INFO     | ***************************************
[2025-12-11 16:55:59] 2025-12-11 21:55:05,418 | INFO     | 
[2025-12-11 16:55:59] 2025-12-11 21:55:05,421 | INFO     | architecture information:
[2025-12-11 16:55:59] 2025-12-11 21:55:05,422 | INFO     | executing command: cat /etc/os-release
[2025-12-11 16:55:59] 2025-12-11 21:55:05,441 | INFO     | cat /etc/os-release:
[2025-12-11 16:55:59] NAME="CentOS Linux"
[2025-12-11 16:55:59] VERSION="7 (Core)"
[2025-12-11 16:55:59] ID="centos"
[2025-12-11 16:55:59] ID_LIKE="rhel fedora"
[2025-12-11 16:55:59] VERSION_ID="7"
[2025-12-11 16:55:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-11 16:55:59] ANSI_COLOR="0;31"
[2025-12-11 16:55:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-11 16:55:59] HOME_URL="https://www.centos.org/"
[2025-12-11 16:55:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-11 16:55:59] 
[2025-12-11 16:55:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-11 16:55:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-11 16:55:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-11 16:55:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-11 16:55:59] 
[2025-12-11 16:55:59] 2025-12-11 21:55:05,441 | INFO     | ***************************************
[2025-12-11 16:55:59] 2025-12-11 21:55:05,944 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/7
[2025-12-11 16:55:59] 2025-12-11 21:55:05,965 | INFO     | sufficient remaining disk space (385791033344 B)
[2025-12-11 16:55:59] 2025-12-11 21:55:05,965 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-11 16:55:59] 2025-12-11 21:55:05,966 | INFO     | current server update state: UPDATING_FINAL
[2025-12-11 16:55:59] 2025-12-11 21:55:05,966 | INFO     | update_server=False
[2025-12-11 16:55:59] 2025-12-11 21:55:05,966 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-11 16:55:59] 2025-12-11 21:55:05,966 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-11 16:55:59] 2025-12-11 21:55:06,031 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-11 16:55:59] 2025-12-11 21:55:06,032 | INFO     | aborting loop
[2025-12-11 16:55:59] 2025-12-11 21:55:06,180 | INFO     | all data control threads have been joined
[2025-12-11 16:55:59] 2025-12-11 21:55:06,499 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-11 16:55:59] 2025-12-11 21:55:06,961 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-11 16:55:59] 2025-12-11 21:55:06,971 | INFO     | [job] retrieve thread has finished
[2025-12-11 16:55:59] 2025-12-11 21:55:06,971 | INFO     | [job] queue monitor thread has finished
[2025-12-11 16:55:59] 2025-12-11 21:55:06,980 | INFO     | all payload control threads have been joined
[2025-12-11 16:55:59] 2025-12-11 21:55:06,982 | INFO     | all job control threads have been joined
[2025-12-11 16:55:59] 2025-12-11 21:55:07,036 | INFO     | [job] job monitor thread has finished
[2025-12-11 16:55:59] 2025-12-11 21:55:07,037 | INFO     | [payload] execute_payloads thread has finished
[2025-12-11 16:55:59] 2025-12-11 21:55:07,137 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-11 16:55:59] 2025-12-11 21:55:07,186 | INFO     | [data] control thread has finished
[2025-12-11 16:55:59] 2025-12-11 21:55:07,243 | INFO     | [job] create_data_payload thread has finished
[2025-12-11 16:55:59] 2025-12-11 21:55:07,327 | INFO     | [data] copytool_in thread has finished
[2025-12-11 16:55:59] 2025-12-11 21:55:07,327 | INFO     | [payload] validate_pre thread has finished
[2025-12-11 16:55:59] 2025-12-11 21:55:07,985 | INFO     | [payload] control thread has finished
[2025-12-11 16:55:59] 2025-12-11 21:55:07,988 | INFO     | [job] control thread has finished
[2025-12-11 16:55:59] 2025-12-11 21:55:08,257 | INFO     | [payload] validate_post thread has finished
[2025-12-11 16:55:59] 2025-12-11 21:55:08,414 | INFO     | [payload] failed_post thread has finished
[2025-12-11 16:55:59] 2025-12-11 21:55:08,431 | INFO     | [job] validate thread has finished
[2025-12-11 16:55:59] 2025-12-11 21:55:08,504 | INFO     | [data] copytool_out thread has finished
[2025-12-11 16:55:59] 2025-12-11 21:55:10,968 | INFO     | [data] queue_monitor thread has finished
[2025-12-11 16:55:59] 2025-12-11 21:55:37,170 | INFO     | PID=34743 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-11 16:55:59] 2025-12-11 21:55:37,170 | INFO     | .. there are 5 such processes running
[2025-12-11 16:55:59] 2025-12-11 21:55:37,171 | INFO     | found 0 job(s) in 20 queues
[2025-12-11 16:55:59] 2025-12-11 21:55:37,171 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-11 16:55:59] 2025-12-11 21:55:37,171 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-11 16:55:59] 2025-12-11 21:55:53,206 | INFO     | [monitor] cgroup control has ended
[2025-12-11 16:55:59] 2025-12-11 21:55:54,196 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139500410926912)>', '<ExcThread(monitor, started 139499799574272)>']
[2025-12-11 16:55:59] 2025-12-11 21:55:54,253 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-11 16:55:59] 2025-12-11 21:55:54,253 | INFO     | [monitor] control thread has ended
[2025-12-11 16:55:59] 2025-12-11 21:55:59,220 | INFO     | all workflow threads have been joined
[2025-12-11 16:55:59] 2025-12-11 21:55:59,221 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-11 16:55:59] 2025-12-11 21:55:59,221 | INFO     | traces error code: 0
[2025-12-11 16:55:59] 2025-12-11 21:55:59,221 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-11 16:55:59] 2025-12-11 21:55:59,358 [wrapper] ==== pilot stdout END ====
[2025-12-11 16:55:59] 2025-12-11 21:55:59,362 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-11 16:55:59] 2025-12-11 21:55:59,366 [wrapper] pilotpid: 34743
[2025-12-11 16:55:59] 2025-12-11 21:55:59,370 [wrapper] Pilot exit status: 0
[2025-12-11 16:55:59] 2025-12-11 21:55:59,385 [wrapper] pandaids: 6925385228 6925385228
[2025-12-11 16:55:59] 2025-12-11 21:55:59,462 [wrapper] cleanup supervisor_pilot  350014 34745
[2025-12-11 16:55:59] 2025-12-11 21:55:59,467 [wrapper] Test setup, not cleaning
[2025-12-11 16:55:59] 2025-12-11 21:55:59,471 [wrapper] apfmon messages muted
[2025-12-11 16:55:59] 2025-12-11 21:55:59,476 [wrapper] ==== wrapper stdout END ====
[2025-12-11 16:55:59] 2025-12-11 21:55:59,480 [wrapper] ==== wrapper stderr END ====
[2025-12-11 16:55:59]  *** Error codes and diagnostics ***
[2025-12-11 16:55:59]     "exeErrorCode": 0,
[2025-12-11 16:55:59]     "exeErrorDiag": "",
[2025-12-11 16:55:59]     "pilotErrorCode": 0,
[2025-12-11 16:55:59]     "pilotErrorDiag": "",
[2025-12-11 16:55:59]  *** Listing of results directory ***
[2025-12-11 16:55:59] total 1232196
[2025-12-11 16:55:59] drwx------ 5 whitlerd whitlerd      4096 Dec  3 09:30 pilot3
[2025-12-11 16:55:59] -rw-r--r-- 1 whitlerd whitlerd    579449 Dec 10 05:37 pilot3.tar.gz
[2025-12-11 16:55:59] -rwx------ 1 whitlerd whitlerd     36292 Dec 10 06:11 runpilot2-wrapper.sh
[2025-12-11 16:55:59] -rw-r--r-- 1 whitlerd whitlerd      5112 Dec 10 06:11 queuedata.json
[2025-12-11 16:55:59] -rw-rw-r-- 1 whitlerd whitlerd       100 Dec 11 01:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-11 16:55:59] -rwxr-xr-x 1 whitlerd whitlerd      7986 Dec 11 01:26 run_atlas
[2025-12-11 16:55:59] -rw-rw-r-- 1 whitlerd whitlerd       105 Dec 11 01:26 job.xml
[2025-12-11 16:55:59] -rw-r--r-- 3 whitlerd whitlerd 320902395 Dec 11 01:26 EVNT.47860570._000009.pool.root.1
[2025-12-11 16:55:59] -rw-r--r-- 3 whitlerd whitlerd 320902395 Dec 11 01:26 ATLAS.root_0
[2025-12-11 16:55:59] -rw-r--r-- 2 whitlerd whitlerd     15847 Dec 11 01:26 start_atlas.sh
[2025-12-11 16:55:59] drwxrwx--x 2 whitlerd whitlerd      4096 Dec 11 01:26 shared
[2025-12-11 16:55:59] -rw-r--r-- 2 whitlerd whitlerd    592579 Dec 11 01:26 input.tar.gz
[2025-12-11 16:55:59] -rw-rw-r-- 1 whitlerd whitlerd         0 Dec 11 01:26 boinc_setup_complete
[2025-12-11 16:55:59] -rw-rw-r-- 1 whitlerd whitlerd         0 Dec 11 01:26 boinc_lockfile
[2025-12-11 16:55:59] -rw-rw-r-- 1 whitlerd whitlerd      9356 Dec 11 09:08 init_data.xml
[2025-12-11 16:55:59] -rw-rw-r-- 1 whitlerd whitlerd      2820 Dec 11 09:08 pandaJob.out
[2025-12-11 16:55:59] -rw------- 1 whitlerd whitlerd    988866 Dec 11 09:09 agis_schedconf.cvmfs.json
[2025-12-11 16:55:59] -rw-rw-r-- 1 whitlerd whitlerd       533 Dec 11 16:50 boinc_task_state.xml
[2025-12-11 16:55:59] -rw------- 1 whitlerd whitlerd 605217574 Dec 11 16:54 HITS.47860572._000083.pool.root.1
[2025-12-11 16:55:59] -rw------- 1 whitlerd whitlerd        96 Dec 11 16:54 pilot_heartbeat.json
[2025-12-11 16:55:59] -rw------- 1 whitlerd whitlerd      1055 Dec 11 16:54 memory_monitor_summary.json
[2025-12-11 16:55:59] -rw------- 1 whitlerd whitlerd   1516240 Dec 11 16:54 agis_ddmendpoints.agis.ALL.json
[2025-12-11 16:55:59] -rw------- 1 whitlerd whitlerd   1383630 Dec 11 16:54 log.47860572._000083.job.log.tgz.1
[2025-12-11 16:55:59] -rw------- 1 whitlerd whitlerd     28055 Dec 11 16:55 heartbeat.json
[2025-12-11 16:55:59] -rw-rw-r-- 1 whitlerd whitlerd      8192 Dec 11 16:55 boinc_mmap_file
[2025-12-11 16:55:59] -rw-rw-r-- 1 whitlerd whitlerd        29 Dec 11 16:55 wrapper_checkpoint.txt
[2025-12-11 16:55:59] -rw------- 1 whitlerd whitlerd      4836 Dec 11 16:55 pilotlog.txt
[2025-12-11 16:55:59] -rw------- 1 whitlerd whitlerd   4006095 Dec 11 16:55 log.47860572._000083.job.log.1
[2025-12-11 16:55:59] -rw------- 1 whitlerd whitlerd       353 Dec 11 16:55 output.list
[2025-12-11 16:55:59] -rw-rw-r-- 1 whitlerd whitlerd       620 Dec 11 16:55 runtime_log
[2025-12-11 16:55:59] -rw------- 1 whitlerd whitlerd   5427200 Dec 11 16:55 result.tar.gz
[2025-12-11 16:55:59] -rw-rw-r-- 1 whitlerd whitlerd      9111 Dec 11 16:55 runtime_log.err
[2025-12-11 16:55:59] -rw------- 1 whitlerd whitlerd       785 Dec 11 16:55 1wMODmGHXn8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbcQKDmIEghdm.diag
[2025-12-11 16:55:59] -rw-rw-r-- 1 whitlerd whitlerd     23467 Dec 11 16:55 stderr.txt
[2025-12-11 16:55:59] HITS file was successfully produced:
[2025-12-11 16:55:59] -rw------- 1 whitlerd whitlerd 605217574 Dec 11 16:54 shared/HITS.pool.root.1
[2025-12-11 16:55:59]  *** Contents of shared directory: ***
[2025-12-11 16:55:59] total 910324
[2025-12-11 16:55:59] -rw-r--r-- 3 whitlerd whitlerd 320902395 Dec 11 01:26 ATLAS.root_0
[2025-12-11 16:55:59] -rw-r--r-- 2 whitlerd whitlerd     15847 Dec 11 01:26 start_atlas.sh
[2025-12-11 16:55:59] -rw-r--r-- 2 whitlerd whitlerd    592579 Dec 11 01:26 input.tar.gz
[2025-12-11 16:55:59] -rw------- 1 whitlerd whitlerd 605217574 Dec 11 16:54 HITS.pool.root.1
[2025-12-11 16:55:59] -rw------- 1 whitlerd whitlerd   5427200 Dec 11 16:55 result.tar.gz
16:56:00 (14545): run_atlas exited; CPU time 111031.380748
16:56:00 (14545): called boinc_finish(0)

</stderr_txt>
]]>

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