Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:39:33 (2123068): wrapper (7.7.26015): starting
23:39:33 (2123068): wrapper: running run_atlas (--nthreads 12)
[2025-12-09 23:39:34] Arguments: --nthreads 12
[2025-12-09 23:39:34] Threads: 12
[2025-12-09 23:39:34] Checking for CVMFS
[2025-12-09 23:39:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-09 23:39:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-09 23:39:34] Running cvmfs_config stat atlas.cern.ch
[2025-12-09 23:39:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-09 23:39:35] 2.13.2.0 5582 52593 194504 153829 2 96 37089843 39288832 7092 16776704 0 42775304 99.640 38861066 36720 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-09 23:39:35] CVMFS is ok
[2025-12-09 23:39:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-09 23:39:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-09 23:39:35] Further information can be found at the LHC@home message board.
[2025-12-09 23:39:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-09 23:39:35] Checking for apptainer binary...
[2025-12-09 23:39:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-09 23:39:35] Running /usr/bin/apptainer --version
[2025-12-09 23:39:35] apptainer version 1.4.4-1.el9
[2025-12-09 23:39:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-09 23:39:35] c-210-22.aglt2.org
[2025-12-09 23:39:35] apptainer works
[2025-12-09 23:39:35] Set ATHENA_PROC_NUMBER=12
[2025-12-09 23:39:35] Set ATHENA_CORE_NUMBER=12
[2025-12-09 23:39:35] Starting ATLAS job with PandaID=6895673707
[2025-12-09 23:39:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:29:10 (3462964): wrapper (7.7.26015): starting
17:29:10 (3462964): wrapper: running run_atlas (--nthreads 12)
[2025-12-10 17:29:10] Arguments: --nthreads 12
[2025-12-10 17:29:10] Threads: 12
[2025-12-10 17:29:10] This job has been restarted, cleaning up previous attempt
[2025-12-10 17:29:11] Checking for CVMFS
[2025-12-10 17:29:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-10 17:29:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-10 17:29:11] Running cvmfs_config stat atlas.cern.ch
[2025-12-10 17:29:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-10 17:29:12] 2.13.2.0 5582 53662 205312 153859 2 57 25478109 39288833 7368 16776704 0 44026850 99.648 43061875 38396 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-10 17:29:12] CVMFS is ok
[2025-12-10 17:29:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-10 17:29:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-10 17:29:12] Further information can be found at the LHC@home message board.
[2025-12-10 17:29:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-10 17:29:12] Checking for apptainer binary...
[2025-12-10 17:29:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-10 17:29:12] Running /usr/bin/apptainer --version
[2025-12-10 17:29:12] apptainer version 1.4.4-1.el9
[2025-12-10 17:29:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-10 17:29:12] c-210-22.aglt2.org
[2025-12-10 17:29:12] apptainer works
[2025-12-10 17:29:12] Set ATHENA_PROC_NUMBER=12
[2025-12-10 17:29:12] Set ATHENA_CORE_NUMBER=12
[2025-12-10 17:29:12] Starting ATLAS job with PandaID=6895673707
[2025-12-10 17:29:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-11 08:10:31]  *** The last 200 lines of the pilot log: ***
[2025-12-11 08:10:31] 2025-12-11 13:09:57,511 | INFO     | extracted standard memory fields from prmon json
[2025-12-11 08:10:31] 2025-12-11 13:09:57,511 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-11 08:10:31] 2025-12-11 13:09:57,527 | INFO     | fitting pss+swap vs Time
[2025-12-11 08:10:31] 2025-12-11 13:09:57,530 | INFO     | sum of square deviations: 200745040637.1836
[2025-12-11 08:10:31] 2025-12-11 13:09:57,548 | INFO     | sum of deviations: 1747055634793.3381
[2025-12-11 08:10:31] 2025-12-11 13:09:57,549 | INFO     | mean x: 1765432173.6404624
[2025-12-11 08:10:31] 2025-12-11 13:09:57,549 | INFO     | mean y: 3538564.647398844
[2025-12-11 08:10:31] 2025-12-11 13:09:57,549 | INFO     | intersect: -15360767407.81467
[2025-12-11 08:10:31] 2025-12-11 13:09:57,550 | INFO     | chi2: 11.287879236428676
[2025-12-11 08:10:31] 2025-12-11 13:09:57,556 | INFO     | sum of square deviations: 197286162713.88824
[2025-12-11 08:10:31] 2025-12-11 13:09:57,605 | INFO     | sum of deviations: 2113050757529.6008
[2025-12-11 08:10:31] 2025-12-11 13:09:57,606 | INFO     | mean x: 1765432021.1674418
[2025-12-11 08:10:31] 2025-12-11 13:09:57,606 | INFO     | mean y: 3554702.85
[2025-12-11 08:10:31] 2025-12-11 13:09:57,606 | INFO     | intersect: -18905259875.823273
[2025-12-11 08:10:31] 2025-12-11 13:09:57,607 | INFO     | chi2: 7.823879931287758
[2025-12-11 08:10:31] 2025-12-11 13:09:57,607 | INFO     | current chi2=7.823879931287758 (change=30.687777859651145 %)
[2025-12-11 08:10:31] 2025-12-11 13:09:57,610 | INFO     | sum of square deviations: 193867285539.32666
[2025-12-11 08:10:31] 2025-12-11 13:09:57,665 | INFO     | sum of deviations: 2488178032364.5166
[2025-12-11 08:10:31] 2025-12-11 13:09:57,666 | INFO     | mean x: 1765431868.694737
[2025-12-11 08:10:31] 2025-12-11 13:09:57,666 | INFO     | mean y: 3571426.38128655
[2025-12-11 08:10:31] 2025-12-11 13:09:57,666 | INFO     | intersect: -22654757858.532574
[2025-12-11 08:10:31] 2025-12-11 13:09:57,667 | INFO     | chi2: 4.229119531008949
[2025-12-11 08:10:31] 2025-12-11 13:09:57,668 | INFO     | current chi2=4.229119531008949 (change=45.94600673641902 %)
[2025-12-11 08:10:31] 2025-12-11 13:09:57,669 | INFO     | sum of square deviations: 190487968446.73538
[2025-12-11 08:10:31] 2025-12-11 13:09:57,729 | INFO     | sum of deviations: 2702592055801.906
[2025-12-11 08:10:31] 2025-12-11 13:09:57,729 | INFO     | mean x: 1765431716.217647
[2025-12-11 08:10:31] 2025-12-11 13:09:57,729 | INFO     | mean y: 3581098.4329411765
[2025-12-11 08:10:31] 2025-12-11 13:09:57,730 | INFO     | intersect: -25043889197.018715
[2025-12-11 08:10:31] 2025-12-11 13:09:57,731 | INFO     | chi2: 2.915758689016812
[2025-12-11 08:10:31] 2025-12-11 13:09:57,731 | INFO     | current chi2=2.915758689016812 (change=31.05518376490073 %)
[2025-12-11 08:10:31] 2025-12-11 13:09:57,764 | INFO     | sum of square deviations: 187144821140.54892
[2025-12-11 08:10:31] 2025-12-11 13:09:57,856 | INFO     | sum of deviations: 2770131631422.1143
[2025-12-11 08:10:31] 2025-12-11 13:09:57,859 | INFO     | mean x: 1765431563.6639054
[2025-12-11 08:10:31] 2025-12-11 13:09:57,859 | INFO     | mean y: 3584173.049704142
[2025-12-11 08:10:31] 2025-12-11 13:09:57,859 | INFO     | intersect: -26128465796.655613
[2025-12-11 08:10:31] 2025-12-11 13:09:57,861 | INFO     | chi2: 2.607306051123963
[2025-12-11 08:10:31] 2025-12-11 13:09:57,861 | INFO     | current chi2=2.607306051123963 (change=10.578812267789498 %)
[2025-12-11 08:10:31] 2025-12-11 13:09:57,861 | INFO     | right removable region: 844
[2025-12-11 08:10:31] 2025-12-11 13:09:57,862 | INFO     | sum of square deviations: 197283924279.2095
[2025-12-11 08:10:31] 2025-12-11 13:09:57,882 | INFO     | sum of deviations: 1442366454723.28
[2025-12-11 08:10:31] 2025-12-11 13:09:57,882 | INFO     | mean x: 1765432326.1627908
[2025-12-11 08:10:31] 2025-12-11 13:09:57,882 | INFO     | mean y: 3551974.68372093
[2025-12-11 08:10:31] 2025-12-11 13:09:57,882 | INFO     | intersect: -12903735705.46938
[2025-12-11 08:10:31] 2025-12-11 13:09:57,884 | INFO     | chi2: 9.010166210509318
[2025-12-11 08:10:31] 2025-12-11 13:09:57,884 | INFO     | current chi2=9.010166210509318 (change=20.178396474765915 %)
[2025-12-11 08:10:31] 2025-12-11 13:09:57,884 | INFO     | left removable region: 10
[2025-12-11 08:10:31] 2025-12-11 13:09:57,885 | INFO     | sum of square deviations: 179931849577.13727
[2025-12-11 08:10:31] 2025-12-11 13:09:57,907 | INFO     | sum of deviations: 2368717538682.8887
[2025-12-11 08:10:31] 2025-12-11 13:09:57,907 | INFO     | mean x: 1765431838.1726618
[2025-12-11 08:10:31] 2025-12-11 13:09:57,907 | INFO     | mean y: 3602507.3549160673
[2025-12-11 08:10:31] 2025-12-11 13:09:57,908 | INFO     | intersect: -23237471089.434864
[2025-12-11 08:10:31] 2025-12-11 13:09:57,909 | INFO     | chi2: 0.18444119743871037
[2025-12-11 08:10:31] 2025-12-11 13:09:57,909 | INFO     | current memory leak: 13.16 B/s (using 834 data points, chi2=0.18)
[2025-12-11 08:10:31] 2025-12-11 13:09:57,910 | INFO     | could have reported an average CPU frequency of 2599 MHz (32 samples)
[2025-12-11 08:10:31] 2025-12-11 13:09:57,911 | INFO     | ..............................
[2025-12-11 08:10:31] 2025-12-11 13:09:57,911 | INFO     | . Timing measurements:
[2025-12-11 08:10:31] 2025-12-11 13:09:57,911 | INFO     | . get job = 0 s
[2025-12-11 08:10:31] 2025-12-11 13:09:57,911 | INFO     | . initial setup = 3 s
[2025-12-11 08:10:31] 2025-12-11 13:09:57,911 | INFO     | . payload setup = 14 s
[2025-12-11 08:10:31] 2025-12-11 13:09:57,911 | INFO     | . stage-in = 0 s
[2025-12-11 08:10:31] 2025-12-11 13:09:57,911 | INFO     | . payload execution = 52761 s
[2025-12-11 08:10:31] 2025-12-11 13:09:57,911 | INFO     | . stage-out = 7 s
[2025-12-11 08:10:31] 2025-12-11 13:09:57,911 | INFO     | . log creation = 1 s
[2025-12-11 08:10:31] 2025-12-11 13:09:57,911 | INFO     | ..............................
[2025-12-11 08:10:31] 2025-12-11 13:09:58,026 | INFO     | 
[2025-12-11 08:10:31] 2025-12-11 13:09:58,031 | INFO     | job summary report
[2025-12-11 08:10:31] 2025-12-11 13:09:58,031 | INFO     | --------------------------------------------------
[2025-12-11 08:10:31] 2025-12-11 13:09:58,031 | INFO     | PanDA job id: 6895673707
[2025-12-11 08:10:31] 2025-12-11 13:09:58,031 | INFO     | task id: 47556149
[2025-12-11 08:10:31] 2025-12-11 13:09:58,031 | INFO     | errors: (none)
[2025-12-11 08:10:31] 2025-12-11 13:09:58,031 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-11 08:10:31] 2025-12-11 13:09:58,031 | INFO     | pilot state: finished 
[2025-12-11 08:10:31] 2025-12-11 13:09:58,032 | INFO     | transexitcode: 0
[2025-12-11 08:10:31] 2025-12-11 13:09:58,032 | INFO     | exeerrorcode: 0
[2025-12-11 08:10:31] 2025-12-11 13:09:58,032 | INFO     | exeerrordiag: 
[2025-12-11 08:10:31] 2025-12-11 13:09:58,032 | INFO     | exitcode: 0
[2025-12-11 08:10:31] 2025-12-11 13:09:58,032 | INFO     | exitmsg: OK
[2025-12-11 08:10:31] 2025-12-11 13:09:58,032 | INFO     | cpuconsumptiontime: 299154 s
[2025-12-11 08:10:31] 2025-12-11 13:09:58,032 | INFO     | nevents: 1000
[2025-12-11 08:10:31] 2025-12-11 13:09:58,032 | INFO     | neventsw: 0
[2025-12-11 08:10:31] 2025-12-11 13:09:58,032 | INFO     | pid: 3473998
[2025-12-11 08:10:31] 2025-12-11 13:09:58,033 | INFO     | pgrp: 3473998
[2025-12-11 08:10:31] 2025-12-11 13:09:58,033 | INFO     | corecount: 12
[2025-12-11 08:10:31] 2025-12-11 13:09:58,033 | INFO     | event service: False
[2025-12-11 08:10:31] 2025-12-11 13:09:58,033 | INFO     | sizes: {0: 2284314, 1: 2284314, 9: 2284604, 12: 2284632, 52777: 2334088, 52786: 2343082, 52789: 2343266, 52805: 2343512}
[2025-12-11 08:10:31] 2025-12-11 13:09:58,033 | INFO     | --------------------------------------------------
[2025-12-11 08:10:31] 2025-12-11 13:09:58,033 | INFO     | 
[2025-12-11 08:10:31] 2025-12-11 13:09:58,033 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-11 08:10:31] 2025-12-11 13:09:58,099 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-11 08:10:31] 2025-12-11 13:09:58,099 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-11 08:10:31] 2025-12-11 13:09:58,099 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-11 08:10:31] 2025-12-11 13:09:58,099 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-11 08:10:31] 2025-12-11 13:09:58,099 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-11 08:10:31] 2025-12-11 13:09:58,100 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-11 08:10:31] 2025-12-11 13:09:58,100 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-11 08:10:31] 2025-12-11 13:09:58,100 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-11 08:10:31] 2025-12-11 13:09:58,100 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-11 08:10:31] 2025-12-11 13:09:58,100 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-11 08:10:31] 2025-12-11 13:09:58,100 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-11 08:10:31] 2025-12-11 13:09:58,100 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-11 08:10:31] 2025-12-11 13:09:58,100 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-11 08:10:31] 2025-12-11 13:09:58,100 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-11 08:10:31] 2025-12-11 13:09:58,101 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-11 08:10:31] 2025-12-11 13:09:58,101 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-11 08:10:31] 2025-12-11 13:09:58,101 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-11 08:10:31] 2025-12-11 13:09:58,101 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-11 08:10:31] 2025-12-11 13:09:58,101 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-11 08:10:31] 2025-12-11 13:09:58,101 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-11 08:10:31] 2025-12-11 13:09:58,101 | INFO     | job 6895673707 has completed (purged errors)
[2025-12-11 08:10:31] 2025-12-11 13:09:58,102 | INFO     | overall cleanup function is called
[2025-12-11 08:10:31] 2025-12-11 13:09:59,343 | INFO     | --- collectZombieJob: --- 10, [3473998]
[2025-12-11 08:10:31] 2025-12-11 13:09:59,344 | INFO     | zombie collector waiting for pid 3473998
[2025-12-11 08:10:31] 2025-12-11 13:09:59,344 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-11 08:10:31] 2025-12-11 13:09:59,344 | INFO     | collected zombie processes
[2025-12-11 08:10:31] 2025-12-11 13:09:59,344 | INFO     | will attempt to kill all subprocesses of pid=3473998
[2025-12-11 08:10:31] 2025-12-11 13:10:00,088 | INFO     | process IDs to be killed: [3473998] (in reverse order)
[2025-12-11 08:10:31] 2025-12-11 13:10:00,181 | WARNING  | found no corresponding commands to process id(s)
[2025-12-11 08:10:31] 2025-12-11 13:10:00,181 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-11 08:10:31] 2025-12-11 13:10:00,189 | INFO     | did not find any defunct processes belonging to 3473998
[2025-12-11 08:10:31] 2025-12-11 13:10:00,263 | INFO     | did not find any defunct processes belonging to 3473998
[2025-12-11 08:10:31] 2025-12-11 13:10:00,267 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-11 08:10:31] 2025-12-11 13:10:00,267 | INFO     | ready for new job
[2025-12-11 08:10:31] 2025-12-11 13:10:00,267 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-11 08:10:31] 2025-12-11 13:10:00,368 | INFO     | ***************************************
[2025-12-11 08:10:31] 2025-12-11 13:10:00,368 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-11 08:10:31] 2025-12-11 13:10:00,368 | INFO     | ***************************************
[2025-12-11 08:10:31] 2025-12-11 13:10:00,368 | INFO     | 
[2025-12-11 08:10:31] 2025-12-11 13:10:00,370 | INFO     | architecture information:
[2025-12-11 08:10:31] 2025-12-11 13:10:00,371 | INFO     | executing command: cat /etc/os-release
[2025-12-11 08:10:31] 2025-12-11 13:10:00,398 | INFO     | cat /etc/os-release:
[2025-12-11 08:10:31] NAME="CentOS Linux"
[2025-12-11 08:10:31] VERSION="7 (Core)"
[2025-12-11 08:10:31] ID="centos"
[2025-12-11 08:10:31] ID_LIKE="rhel fedora"
[2025-12-11 08:10:31] VERSION_ID="7"
[2025-12-11 08:10:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-11 08:10:31] ANSI_COLOR="0;31"
[2025-12-11 08:10:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-11 08:10:31] HOME_URL="https://www.centos.org/"
[2025-12-11 08:10:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-11 08:10:31] 
[2025-12-11 08:10:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-11 08:10:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-11 08:10:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-11 08:10:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-11 08:10:31] 
[2025-12-11 08:10:31] 2025-12-11 13:10:00,398 | INFO     | ***************************************
[2025-12-11 08:10:31] 2025-12-11 13:10:00,902 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-11 08:10:31] 2025-12-11 13:10:00,932 | INFO     | sufficient remaining disk space (51703185408 B)
[2025-12-11 08:10:31] 2025-12-11 13:10:00,932 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-11 08:10:31] 2025-12-11 13:10:00,933 | INFO     | current server update state: UPDATING_FINAL
[2025-12-11 08:10:31] 2025-12-11 13:10:00,933 | INFO     | update_server=False
[2025-12-11 08:10:31] 2025-12-11 13:10:00,933 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-11 08:10:31] 2025-12-11 13:10:01,072 | INFO     | all payload control threads have been joined
[2025-12-11 08:10:31] 2025-12-11 13:10:01,531 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-11 08:10:31] 2025-12-11 13:10:01,532 | INFO     | aborting loop
[2025-12-11 08:10:31] 2025-12-11 13:10:01,585 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-11 08:10:31] 2025-12-11 13:10:01,684 | INFO     | all job control threads have been joined
[2025-12-11 08:10:31] 2025-12-11 13:10:01,941 | INFO     | [job] retrieve thread has finished
[2025-12-11 08:10:31] 2025-12-11 13:10:01,993 | INFO     | all data control threads have been joined
[2025-12-11 08:10:31] 2025-12-11 13:10:02,078 | INFO     | [payload] control thread has finished
[2025-12-11 08:10:31] 2025-12-11 13:10:02,365 | INFO     | [payload] validate_post thread has finished
[2025-12-11 08:10:31] 2025-12-11 13:10:02,389 | INFO     | [payload] validate_pre thread has finished
[2025-12-11 08:10:31] 2025-12-11 13:10:02,417 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-11 08:10:31] 2025-12-11 13:10:02,537 | INFO     | [job] job monitor thread has finished
[2025-12-11 08:10:31] 2025-12-11 13:10:02,647 | INFO     | [payload] execute_payloads thread has finished
[2025-12-11 08:10:31] 2025-12-11 13:10:02,665 | INFO     | [data] copytool_in thread has finished
[2025-12-11 08:10:31] 2025-12-11 13:10:02,766 | INFO     | [job] control thread has finished
[2025-12-11 08:10:31] 2025-12-11 13:10:02,763 | INFO     | [job] create_data_payload thread has finished
[2025-12-11 08:10:31] 2025-12-11 13:10:02,919 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-11 08:10:31] 2025-12-11 13:10:02,993 | INFO     | [job] validate thread has finished
[2025-12-11 08:10:31] 2025-12-11 13:10:03,009 | INFO     | [data] control thread has finished
[2025-12-11 08:10:31] 2025-12-11 13:10:03,041 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-11 08:10:31] 2025-12-11 13:10:03,278 | INFO     | [payload] failed_post thread has finished
[2025-12-11 08:10:31] 2025-12-11 13:10:04,048 | INFO     | [job] queue monitor thread has finished
[2025-12-11 08:10:31] 2025-12-11 13:10:04,423 | INFO     | [data] copytool_out thread has finished
[2025-12-11 08:10:31] 2025-12-11 13:10:05,596 | INFO     | [data] queue_monitor thread has finished
[2025-12-11 08:10:31] 2025-12-11 13:10:09,080 | INFO     | [monitor] cgroup control has ended
[2025-12-11 08:10:31] 2025-12-11 13:10:10,617 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139893815592768)>', '<ExcThread(monitor, started 139893541934848)>']
[2025-12-11 08:10:31] 2025-12-11 13:10:15,684 | INFO     | all workflow threads have been joined
[2025-12-11 08:10:31] 2025-12-11 13:10:15,685 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-11 08:10:31] 2025-12-11 13:10:15,706 | INFO     | traces error code: 0
[2025-12-11 08:10:31] 2025-12-11 13:10:15,707 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-11 08:10:31] 2025-12-11 13:10:30,643 | INFO     | PID=3466670 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-11 08:10:31] 2025-12-11 13:10:30,643 | INFO     | .. there are 7 such processes running
[2025-12-11 08:10:31] 2025-12-11 13:10:30,644 | INFO     | found 0 job(s) in 20 queues
[2025-12-11 08:10:31] 2025-12-11 13:10:30,644 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-11 08:10:31] 2025-12-11 13:10:30,644 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-11 08:10:31] 2025-12-11 13:10:30,644 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-11 08:10:31] 2025-12-11 13:10:30,644 | INFO     | [monitor] control thread has ended
[2025-12-11 08:10:31] 2025-12-11 13:10:30,874 [wrapper] ==== pilot stdout END ====
[2025-12-11 08:10:31] 2025-12-11 13:10:30,937 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-11 08:10:31] 2025-12-11 13:10:30,950 [wrapper] pilotpid: 3466670
[2025-12-11 08:10:31] 2025-12-11 13:10:30,953 [wrapper] Pilot exit status: 0
[2025-12-11 08:10:31] 2025-12-11 13:10:30,969 [wrapper] pandaids: 6895673707 6895673707
[2025-12-11 08:10:31] 2025-12-11 13:10:31,016 [wrapper] cleanup supervisor_pilot  275240 3466671
[2025-12-11 08:10:31] 2025-12-11 13:10:31,019 [wrapper] Test setup, not cleaning
[2025-12-11 08:10:31] 2025-12-11 13:10:31,022 [wrapper] apfmon messages muted
[2025-12-11 08:10:31] 2025-12-11 13:10:31,025 [wrapper] ==== wrapper stdout END ====
[2025-12-11 08:10:31] 2025-12-11 13:10:31,028 [wrapper] ==== wrapper stderr END ====
[2025-12-11 08:10:31]  *** Error codes and diagnostics ***
[2025-12-11 08:10:31]     "exeErrorCode": 0,
[2025-12-11 08:10:31]     "exeErrorDiag": "",
[2025-12-11 08:10:31]     "pilotErrorCode": 0,
[2025-12-11 08:10:31]     "pilotErrorDiag": "",
[2025-12-11 08:10:31]  *** Listing of results directory ***
[2025-12-11 08:10:31] total 1718520
[2025-12-11 08:10:31] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-11 08:10:31] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 08:08 pilot3.tar.gz
[2025-12-11 08:10:31] -rwx------. 1 boincer umatlas     36292 Nov 24 08:16 runpilot2-wrapper.sh
[2025-12-11 08:10:31] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 08:16 queuedata.json
[2025-12-11 08:10:31] -rw-r--r--. 1 boincer umatlas       100 Dec  9 23:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-11 08:10:31] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  9 23:39 run_atlas
[2025-12-11 08:10:31] -rw-r--r--. 1 boincer umatlas       105 Dec  9 23:39 job.xml
[2025-12-11 08:10:31] -rw-r--r--. 3 boincer umatlas 412452714 Dec  9 23:39 EVNT.47483658._001350.pool.root.1
[2025-12-11 08:10:31] -rw-r--r--. 3 boincer umatlas 412452714 Dec  9 23:39 ATLAS.root_0
[2025-12-11 08:10:31] -rw-r--r--. 2 boincer umatlas     15847 Dec  9 23:39 start_atlas.sh
[2025-12-11 08:10:31] drwxrwx--x. 2 boincer umatlas      4096 Dec  9 23:39 shared
[2025-12-11 08:10:31] -rw-r--r--. 2 boincer umatlas    590105 Dec  9 23:39 input.tar.gz
[2025-12-11 08:10:31] -rw-r--r--. 1 boincer umatlas         0 Dec  9 23:39 boinc_lockfile
[2025-12-11 08:10:31] -rw-r--r--. 1 boincer umatlas      2785 Dec 10 17:29 pandaJob.out
[2025-12-11 08:10:31] -rw-------. 1 boincer umatlas        57 Dec 10 17:29 setup.sh.local
[2025-12-11 08:10:31] -rw-------. 1 boincer umatlas    993478 Dec 10 17:29 agis_schedconf.cvmfs.json
[2025-12-11 08:10:31] -rw-r--r--. 1 boincer umatlas       534 Dec 11 07:47 boinc_task_state.xml
[2025-12-11 08:10:31] -rw-r--r--. 1 boincer umatlas      6663 Dec 11 08:03 init_data.xml
[2025-12-11 08:10:31] -rw-------. 1 boincer umatlas 912266200 Dec 11 08:08 HITS.47556149._003368.pool.root.1
[2025-12-11 08:10:31] -rw-------. 1 boincer umatlas      1067 Dec 11 08:09 memory_monitor_summary.json
[2025-12-11 08:10:31] -rw-------. 1 boincer umatlas   1516240 Dec 11 08:09 agis_ddmendpoints.agis.ALL.json
[2025-12-11 08:10:31] -rw-------. 1 boincer umatlas   2503121 Dec 11 08:09 log.47556149._003368.job.log.tgz.1
[2025-12-11 08:10:31] -rw-------. 1 boincer umatlas        96 Dec 11 08:09 pilot_heartbeat.json
[2025-12-11 08:10:31] -rw-------. 1 boincer umatlas      8649 Dec 11 08:09 heartbeat.json
[2025-12-11 08:10:31] -rw-r--r--. 1 boincer umatlas        30 Dec 11 08:10 wrapper_checkpoint.txt
[2025-12-11 08:10:31] -rw-r--r--. 1 boincer umatlas      8192 Dec 11 08:10 boinc_mmap_file
[2025-12-11 08:10:31] -rw-------. 1 boincer umatlas       822 Dec 11 08:10 pilotlog.txt
[2025-12-11 08:10:31] -rw-------. 1 boincer umatlas   6829628 Dec 11 08:10 log.47556149._003368.job.log.1
[2025-12-11 08:10:31] -rw-------. 1 boincer umatlas       353 Dec 11 08:10 output.list
[2025-12-11 08:10:31] -rw-r--r--. 1 boincer umatlas       620 Dec 11 08:10 runtime_log
[2025-12-11 08:10:31] -rw-------. 1 boincer umatlas   9349120 Dec 11 08:10 result.tar.gz
[2025-12-11 08:10:31] -rw-r--r--. 1 boincer umatlas      9430 Dec 11 08:10 runtime_log.err
[2025-12-11 08:10:31] -rw-------. 1 boincer umatlas       789 Dec 11 08:10 kiAODmPblh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmP4IKDmjYZo9n.diag
[2025-12-11 08:10:31] -rw-r--r--. 1 boincer umatlas     23294 Dec 11 08:10 stderr.txt
[2025-12-11 08:10:31] HITS file was successfully produced:
[2025-12-11 08:10:31] -rw-------. 1 boincer umatlas 912266200 Dec 11 08:08 shared/HITS.pool.root.1
[2025-12-11 08:10:31]  *** Contents of shared directory: ***
[2025-12-11 08:10:31] total 1303412
[2025-12-11 08:10:31] -rw-r--r--. 3 boincer umatlas 412452714 Dec  9 23:39 ATLAS.root_0
[2025-12-11 08:10:31] -rw-r--r--. 2 boincer umatlas     15847 Dec  9 23:39 start_atlas.sh
[2025-12-11 08:10:31] -rw-r--r--. 2 boincer umatlas    590105 Dec  9 23:39 input.tar.gz
[2025-12-11 08:10:31] -rw-------. 1 boincer umatlas 912266200 Dec 11 08:08 HITS.pool.root.1
[2025-12-11 08:10:31] -rw-------. 1 boincer umatlas   9349120 Dec 11 08:10 result.tar.gz
08:10:32 (3462964): run_atlas exited; CPU time 298853.511396
08:10:32 (3462964): called boinc_finish(0)

</stderr_txt>
]]>

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