Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:54:36 (16061): wrapper (7.7.26015): starting
21:54:36 (16061): wrapper: running run_atlas (--nthreads 8)
[2025-12-09 21:54:36] Arguments: --nthreads 8
[2025-12-09 21:54:36] Threads: 8
[2025-12-09 21:54:36] Checking for CVMFS
[2025-12-09 21:54:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-09 21:54:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-09 21:54:36] Running cvmfs_config stat atlas.cern.ch
[2025-12-09 21:54:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-09 21:54:36] 2.11.2.0 2787 181137 90448 153825 2 1 19507874 20275201 1 130560 2 70460626 99.945 8068151 24703 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-09 21:54:36] CVMFS is ok
[2025-12-09 21:54:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-09 21:54:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-09 21:54:36] Further information can be found at the LHC@home message board.
[2025-12-09 21:54:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-09 21:54:36] Checking for apptainer binary...
[2025-12-09 21:54:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-09 21:54:36] Running /usr/bin/apptainer --version
[2025-12-09 21:54:36] apptainer version 1.3.2-1.el7
[2025-12-09 21:54:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-09 21:54:38] c-115-2.aglt2.org
[2025-12-09 21:54:38] apptainer works
[2025-12-09 21:54:38] Set ATHENA_PROC_NUMBER=8
[2025-12-09 21:54:38] Set ATHENA_CORE_NUMBER=8
[2025-12-09 21:54:38] Starting ATLAS job with PandaID=6925005955
[2025-12-09 21:54:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-10 05:23:01]  *** The last 200 lines of the pilot log: ***
[2025-12-10 05:23:01] 2025-12-10 10:22:29,109 | INFO     | fitting pss+swap vs Time
[2025-12-10 05:23:01] 2025-12-10 10:22:29,110 | INFO     | sum of square deviations: 26414260609.990944
[2025-12-10 05:23:01] 2025-12-10 10:22:29,114 | INFO     | sum of deviations: 401017098918.16284
[2025-12-10 05:23:01] 2025-12-10 10:22:29,114 | INFO     | mean x: 1765348724.9045455
[2025-12-10 05:23:01] 2025-12-10 10:22:29,114 | INFO     | mean y: 3511434.2181818183
[2025-12-10 05:23:01] 2025-12-10 10:22:29,115 | INFO     | intersect: -26797731829.518265
[2025-12-10 05:23:01] 2025-12-10 10:22:29,115 | INFO     | chi2: 6.401895246568619
[2025-12-10 05:23:01] 2025-12-10 10:22:29,116 | INFO     | sum of square deviations: 25524028439.163204
[2025-12-10 05:23:01] 2025-12-10 10:22:29,120 | INFO     | sum of deviations: 560298062105.8966
[2025-12-10 05:23:01] 2025-12-10 10:22:29,120 | INFO     | mean x: 1765348572.4091954
[2025-12-10 05:23:01] 2025-12-10 10:22:29,120 | INFO     | sufficient remaining disk space (17937989632 B)
[2025-12-10 05:23:01] 2025-12-10 10:22:29,120 | INFO     | mean y: 3538678.275862069
[2025-12-10 05:23:01] 2025-12-10 10:22:29,121 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-10 05:23:01] 2025-12-10 10:22:29,121 | INFO     | intersect: -38749018991.83741
[2025-12-10 05:23:01] 2025-12-10 10:22:29,122 | INFO     | chi2: 3.7734474834782987
[2025-12-10 05:23:01] 2025-12-10 10:22:29,122 | INFO     | current chi2=3.7734474834782987 (change=41.05733789535457 %)
[2025-12-10 05:23:01] 2025-12-10 10:22:29,123 | INFO     | sum of square deviations: 24653976501.46276
[2025-12-10 05:23:01] 2025-12-10 10:22:29,127 | INFO     | sum of deviations: 575353198961.9971
[2025-12-10 05:23:01] 2025-12-10 10:22:29,127 | INFO     | mean x: 1765348419.9093022
[2025-12-10 05:23:01] 2025-12-10 10:22:29,127 | INFO     | mean y: 3541283.0255813953
[2025-12-10 05:23:01] 2025-12-10 10:22:29,127 | INFO     | intersect: -41194634622.47433
[2025-12-10 05:23:01] 2025-12-10 10:22:29,128 | INFO     | chi2: 3.6058466591956275
[2025-12-10 05:23:01] 2025-12-10 10:22:29,128 | INFO     | current chi2=3.6058466591956275 (change=4.441583592099701 %)
[2025-12-10 05:23:01] 2025-12-10 10:22:29,128 | INFO     | right removable region: 429
[2025-12-10 05:23:01] 2025-12-10 10:22:29,129 | INFO     | sum of square deviations: 25523919859.16322
[2025-12-10 05:23:01] 2025-12-10 10:22:29,133 | INFO     | sum of deviations: 211657437504.76083
[2025-12-10 05:23:01] 2025-12-10 10:22:29,134 | INFO     | mean x: 1765348877.4091954
[2025-12-10 05:23:01] 2025-12-10 10:22:29,134 | INFO     | mean y: 3543845.259770115
[2025-12-10 05:23:01] 2025-12-10 10:22:29,134 | INFO     | intersect: -14635634688.29116
[2025-12-10 05:23:01] 2025-12-10 10:22:29,134 | INFO     | chi2: 3.1599846026276346
[2025-12-10 05:23:01] 2025-12-10 10:22:29,135 | INFO     | current chi2=3.1599846026276346 (change=50.639857715238804 %)
[2025-12-10 05:23:01] 2025-12-10 10:22:29,135 | INFO     | sum of square deviations: 24653812045.816315
[2025-12-10 05:23:01] 2025-12-10 10:22:29,139 | INFO     | sum of deviations: 167234775964.91135
[2025-12-10 05:23:01] 2025-12-10 10:22:29,139 | INFO     | mean x: 1765349029.9139535
[2025-12-10 05:23:01] 2025-12-10 10:22:29,139 | INFO     | mean y: 3551597.7813953487
[2025-12-10 05:23:01] 2025-12-10 10:22:29,140 | INFO     | intersect: -11971381486.3553
[2025-12-10 05:23:01] 2025-12-10 10:22:29,140 | INFO     | chi2: 2.9027413692947386
[2025-12-10 05:23:01] 2025-12-10 10:22:29,140 | INFO     | current chi2=2.9027413692947386 (change=8.140648315785764 %)
[2025-12-10 05:23:01] 2025-12-10 10:22:29,140 | INFO     | left removable region: 20
[2025-12-10 05:23:01] 2025-12-10 10:22:29,141 | INFO     | sum of square deviations: 21215294287.667255
[2025-12-10 05:23:01] 2025-12-10 10:22:29,144 | INFO     | sum of deviations: 299041162516.0099
[2025-12-10 05:23:01] 2025-12-10 10:22:29,145 | INFO     | mean x: 1765348999.420538
[2025-12-10 05:23:01] 2025-12-10 10:22:29,145 | INFO     | mean y: 3590821.0464547677
[2025-12-10 05:23:01] 2025-12-10 10:22:29,145 | INFO     | intersect: -24879967703.997204
[2025-12-10 05:23:01] 2025-12-10 10:22:29,145 | INFO     | chi2: 0.028259831078935788
[2025-12-10 05:23:01] 2025-12-10 10:22:29,146 | INFO     | current memory leak: 14.10 B/s (using 409 data points, chi2=0.03)
[2025-12-10 05:23:01] 2025-12-10 10:22:29,146 | INFO     | could have reported an average CPU frequency of 2355 MHz (18 samples)
[2025-12-10 05:23:01] 2025-12-10 10:22:29,146 | INFO     | ..............................
[2025-12-10 05:23:01] 2025-12-10 10:22:29,146 | INFO     | . Timing measurements:
[2025-12-10 05:23:01] 2025-12-10 10:22:29,146 | INFO     | . get job = 0 s
[2025-12-10 05:23:01] 2025-12-10 10:22:29,147 | INFO     | . initial setup = 2 s
[2025-12-10 05:23:01] 2025-12-10 10:22:29,147 | INFO     | . payload setup = 16 s
[2025-12-10 05:23:01] 2025-12-10 10:22:29,147 | INFO     | . stage-in = 0 s
[2025-12-10 05:23:01] 2025-12-10 10:22:29,147 | INFO     | . payload execution = 26807 s
[2025-12-10 05:23:01] 2025-12-10 10:22:29,147 | INFO     | . stage-out = 2 s
[2025-12-10 05:23:01] 2025-12-10 10:22:29,147 | INFO     | . log creation = 0 s
[2025-12-10 05:23:01] 2025-12-10 10:22:29,147 | INFO     | ..............................
[2025-12-10 05:23:01] 2025-12-10 10:22:29,235 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6925005955: 9308822 B (within 2768240640 B limit)
[2025-12-10 05:23:01] 2025-12-10 10:22:29,235 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6925005955/HITS.47860601._000033.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-10 05:23:01] 2025-12-10 10:22:29,235 | INFO     | total size of present files: 0 B (workdir size: 9308822 B)
[2025-12-10 05:23:01] 2025-12-10 10:22:29,236 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6925005955/HITS.47860601._000033.pool.root.1 since it does not exist
[2025-12-10 05:23:01] 2025-12-10 10:22:29,319 | INFO     | number of running child processes to parent process 26966: 1
[2025-12-10 05:23:01] 2025-12-10 10:22:29,319 | INFO     | maximum number of monitored processes: 16
[2025-12-10 05:23:01] 2025-12-10 10:22:29,319 | INFO     | aborting job monitoring since job object (job id=6925005955) has expired
[2025-12-10 05:23:01] 2025-12-10 10:22:29,584 | INFO     | 
[2025-12-10 05:23:01] 2025-12-10 10:22:29,584 | INFO     | job summary report
[2025-12-10 05:23:01] 2025-12-10 10:22:29,585 | INFO     | --------------------------------------------------
[2025-12-10 05:23:01] 2025-12-10 10:22:29,585 | INFO     | PanDA job id: 6925005955
[2025-12-10 05:23:01] 2025-12-10 10:22:29,585 | INFO     | task id: 47860601
[2025-12-10 05:23:01] 2025-12-10 10:22:29,585 | INFO     | errors: (none)
[2025-12-10 05:23:01] 2025-12-10 10:22:29,585 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-10 05:23:01] 2025-12-10 10:22:29,585 | INFO     | pilot state: finished 
[2025-12-10 05:23:01] 2025-12-10 10:22:29,586 | INFO     | transexitcode: 0
[2025-12-10 05:23:01] 2025-12-10 10:22:29,586 | INFO     | exeerrorcode: 0
[2025-12-10 05:23:01] 2025-12-10 10:22:29,586 | INFO     | exeerrordiag: 
[2025-12-10 05:23:01] 2025-12-10 10:22:29,586 | INFO     | exitcode: 0
[2025-12-10 05:23:01] 2025-12-10 10:22:29,586 | INFO     | exitmsg: OK
[2025-12-10 05:23:01] 2025-12-10 10:22:29,586 | INFO     | cpuconsumptiontime: 206790 s
[2025-12-10 05:23:01] 2025-12-10 10:22:29,587 | INFO     | nevents: 1000
[2025-12-10 05:23:01] 2025-12-10 10:22:29,587 | INFO     | neventsw: 0
[2025-12-10 05:23:01] 2025-12-10 10:22:29,587 | INFO     | pid: 26966
[2025-12-10 05:23:01] 2025-12-10 10:22:29,587 | INFO     | pgrp: 26966
[2025-12-10 05:23:01] 2025-12-10 10:22:29,587 | INFO     | corecount: 8
[2025-12-10 05:23:01] 2025-12-10 10:22:29,587 | INFO     | event service: False
[2025-12-10 05:23:01] 2025-12-10 10:22:29,588 | INFO     | sizes: {0: 2284560, 6: 2284822, 11: 2284850, 26827: 2341682, 26830: 2350732, 26836: 2350922}
[2025-12-10 05:23:01] 2025-12-10 10:22:29,588 | INFO     | --------------------------------------------------
[2025-12-10 05:23:01] 2025-12-10 10:22:29,588 | INFO     | 
[2025-12-10 05:23:01] 2025-12-10 10:22:29,588 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-10 05:23:01] 2025-12-10 10:22:29,616 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-10 05:23:01] 2025-12-10 10:22:29,617 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-10 05:23:01] 2025-12-10 10:22:29,617 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-10 05:23:01] 2025-12-10 10:22:29,617 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-10 05:23:01] 2025-12-10 10:22:29,617 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-10 05:23:01] 2025-12-10 10:22:29,617 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-10 05:23:01] 2025-12-10 10:22:29,618 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-10 05:23:01] 2025-12-10 10:22:29,618 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-10 05:23:01] 2025-12-10 10:22:29,618 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-10 05:23:01] 2025-12-10 10:22:29,618 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-10 05:23:01] 2025-12-10 10:22:29,618 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-10 05:23:01] 2025-12-10 10:22:29,619 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-10 05:23:01] 2025-12-10 10:22:29,619 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-10 05:23:01] 2025-12-10 10:22:29,619 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-10 05:23:01] 2025-12-10 10:22:29,619 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-10 05:23:01] 2025-12-10 10:22:29,619 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-10 05:23:01] 2025-12-10 10:22:29,620 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-10 05:23:01] 2025-12-10 10:22:29,620 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-10 05:23:01] 2025-12-10 10:22:29,620 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-10 05:23:01] 2025-12-10 10:22:29,620 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-10 05:23:01] 2025-12-10 10:22:29,620 | INFO     | job 6925005955 has completed (purged errors)
[2025-12-10 05:23:01] 2025-12-10 10:22:29,621 | INFO     | overall cleanup function is called
[2025-12-10 05:23:01] 2025-12-10 10:22:30,636 | INFO     | --- collectZombieJob: --- 10, [26966]
[2025-12-10 05:23:01] 2025-12-10 10:22:30,637 | INFO     | zombie collector waiting for pid 26966
[2025-12-10 05:23:01] 2025-12-10 10:22:30,637 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-10 05:23:01] 2025-12-10 10:22:30,637 | INFO     | collected zombie processes
[2025-12-10 05:23:01] 2025-12-10 10:22:30,637 | INFO     | will attempt to kill all subprocesses of pid=26966
[2025-12-10 05:23:01] 2025-12-10 10:22:30,725 | INFO     | process IDs to be killed: [26966] (in reverse order)
[2025-12-10 05:23:01] 2025-12-10 10:22:30,779 | WARNING  | found no corresponding commands to process id(s)
[2025-12-10 05:23:01] 2025-12-10 10:22:30,780 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-10 05:23:01] 2025-12-10 10:22:30,784 | INFO     | did not find any defunct processes belonging to 26966
[2025-12-10 05:23:01] 2025-12-10 10:22:30,787 | INFO     | did not find any defunct processes belonging to 26966
[2025-12-10 05:23:01] 2025-12-10 10:22:30,787 | INFO     | ready for new job
[2025-12-10 05:23:01] 2025-12-10 10:22:30,787 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-10 05:23:01] 2025-12-10 10:22:30,790 | INFO     | ***************************************
[2025-12-10 05:23:01] 2025-12-10 10:22:30,790 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-10 05:23:01] 2025-12-10 10:22:30,790 | INFO     | ***************************************
[2025-12-10 05:23:01] 2025-12-10 10:22:30,790 | INFO     | 
[2025-12-10 05:23:01] 2025-12-10 10:22:30,790 | INFO     | architecture information:
[2025-12-10 05:23:01] 2025-12-10 10:22:30,791 | INFO     | executing command: cat /etc/os-release
[2025-12-10 05:23:01] 2025-12-10 10:22:30,811 | INFO     | cat /etc/os-release:
[2025-12-10 05:23:01] NAME="CentOS Linux"
[2025-12-10 05:23:01] VERSION="7 (Core)"
[2025-12-10 05:23:01] ID="centos"
[2025-12-10 05:23:01] ID_LIKE="rhel fedora"
[2025-12-10 05:23:01] VERSION_ID="7"
[2025-12-10 05:23:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-10 05:23:01] ANSI_COLOR="0;31"
[2025-12-10 05:23:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-10 05:23:01] HOME_URL="https://www.centos.org/"
[2025-12-10 05:23:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-10 05:23:01] 
[2025-12-10 05:23:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-10 05:23:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-10 05:23:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-10 05:23:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-10 05:23:01] 
[2025-12-10 05:23:01] 2025-12-10 10:22:30,811 | INFO     | ***************************************
[2025-12-10 05:23:01] 2025-12-10 10:22:31,314 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-10 05:23:01] 2025-12-10 10:22:31,334 | INFO     | sufficient remaining disk space (17951621120 B)
[2025-12-10 05:23:01] 2025-12-10 10:22:31,334 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-10 05:23:01] 2025-12-10 10:22:31,335 | INFO     | current server update state: UPDATING_FINAL
[2025-12-10 05:23:01] 2025-12-10 10:22:31,335 | INFO     | update_server=False
[2025-12-10 05:23:01] 2025-12-10 10:22:31,335 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-10 05:23:01] 2025-12-10 10:22:31,336 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-10 05:23:01] 2025-12-10 10:22:31,634 | INFO     | all payload control threads have been joined
[2025-12-10 05:23:01] 2025-12-10 10:22:31,675 | INFO     | all data control threads have been joined
[2025-12-10 05:23:01] 2025-12-10 10:22:31,822 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-10 05:23:01] 2025-12-10 10:22:31,823 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-10 05:23:01] 2025-12-10 10:22:31,823 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-10 05:23:01] 2025-12-10 10:22:31,823 | INFO     | will abort loop
[2025-12-10 05:23:01] 2025-12-10 10:22:32,337 | INFO     | [job] retrieve thread has finished
[2025-12-10 05:23:01] 2025-12-10 10:22:32,349 | INFO     | [payload] validate_post thread has finished
[2025-12-10 05:23:01] 2025-12-10 10:22:32,419 | INFO     | [payload] validate_pre thread has finished
[2025-12-10 05:23:01] 2025-12-10 10:22:32,640 | INFO     | [payload] control thread has finished
[2025-12-10 05:23:01] 2025-12-10 10:22:32,680 | INFO     | [data] control thread has finished
[2025-12-10 05:23:01] 2025-12-10 10:22:32,829 | INFO     | [job] job monitor thread has finished
[2025-12-10 05:23:01] 2025-12-10 10:22:32,879 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-10 05:23:01] 2025-12-10 10:22:32,985 | INFO     | all job control threads have been joined
[2025-12-10 05:23:01] 2025-12-10 10:22:33,085 | INFO     | [payload] execute_payloads thread has finished
[2025-12-10 05:23:01] 2025-12-10 10:22:33,145 | INFO     | [job] validate thread has finished
[2025-12-10 05:23:01] 2025-12-10 10:22:33,240 | INFO     | [data] copytool_in thread has finished
[2025-12-10 05:23:01] 2025-12-10 10:22:33,340 | INFO     | [data] copytool_out thread has finished
[2025-12-10 05:23:01] 2025-12-10 10:22:33,515 | INFO     | [job] create_data_payload thread has finished
[2025-12-10 05:23:01] 2025-12-10 10:22:33,630 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-10 05:23:01] 2025-12-10 10:22:33,743 | INFO     | [payload] failed_post thread has finished
[2025-12-10 05:23:01] 2025-12-10 10:22:33,991 | INFO     | [job] control thread has finished
[2025-12-10 05:23:01] 2025-12-10 10:22:34,242 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-10 05:23:01] 2025-12-10 10:22:35,247 | INFO     | [job] queue monitor thread has finished
[2025-12-10 05:23:01] 2025-12-10 10:22:37,637 | INFO     | [data] queue_monitor thread has finished
[2025-12-10 05:23:01] 2025-12-10 10:22:40,285 | INFO     | [monitor] cgroup control has ended
[2025-12-10 05:23:01] 2025-12-10 10:22:41,919 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140411349010240)>', '<ExcThread(monitor, started 140410886264576)>']
[2025-12-10 05:23:01] 2025-12-10 10:22:46,938 | INFO     | all workflow threads have been joined
[2025-12-10 05:23:01] 2025-12-10 10:22:46,939 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-10 05:23:01] 2025-12-10 10:22:46,939 | INFO     | traces error code: 0
[2025-12-10 05:23:01] 2025-12-10 10:22:46,939 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-10 05:23:01] 2025-12-10 10:23:01,202 | INFO     | PID=19744 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-10 05:23:01] 2025-12-10 10:23:01,203 | INFO     | found 0 job(s) in 20 queues
[2025-12-10 05:23:01] 2025-12-10 10:23:01,203 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-10 05:23:01] 2025-12-10 10:23:01,203 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-10 05:23:01] 2025-12-10 10:23:01,203 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-10 05:23:01] 2025-12-10 10:23:01,203 | INFO     | [monitor] control thread has ended
[2025-12-10 05:23:01] 2025-12-10 10:23:01,310 [wrapper] ==== pilot stdout END ====
[2025-12-10 05:23:01] 2025-12-10 10:23:01,315 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-10 05:23:01] 2025-12-10 10:23:01,320 [wrapper] pilotpid: 19744
[2025-12-10 05:23:01] 2025-12-10 10:23:01,324 [wrapper] Pilot exit status: 0
[2025-12-10 05:23:01] 2025-12-10 10:23:01,340 [wrapper] pandaids: 6925005955
[2025-12-10 05:23:01] 2025-12-10 10:23:01,382 [wrapper] cleanup supervisor_pilot 29127 19745
[2025-12-10 05:23:01] 2025-12-10 10:23:01,387 [wrapper] Test setup, not cleaning
[2025-12-10 05:23:01] 2025-12-10 10:23:01,391 [wrapper] apfmon messages muted
[2025-12-10 05:23:01] 2025-12-10 10:23:01,396 [wrapper] ==== wrapper stdout END ====
[2025-12-10 05:23:01] 2025-12-10 10:23:01,400 [wrapper] ==== wrapper stderr END ====
[2025-12-10 05:23:01]  *** Error codes and diagnostics ***
[2025-12-10 05:23:01]     "exeErrorCode": 0,
[2025-12-10 05:23:01]     "exeErrorDiag": "",
[2025-12-10 05:23:01]     "pilotErrorCode": 0,
[2025-12-10 05:23:01]     "pilotErrorDiag": "",
[2025-12-10 05:23:01]  *** Listing of results directory ***
[2025-12-10 05:23:01] total 926452
[2025-12-10 05:23:01] -rw-r--r-- 1 boincer umatlas      5112 Dec  9 21:53 queuedata.json
[2025-12-10 05:23:01] -rw-r--r-- 1 boincer umatlas    579449 Dec  9 21:53 pilot3.tar.gz
[2025-12-10 05:23:01] -rwx------ 1 boincer umatlas     36292 Dec  9 21:53 runpilot2-wrapper.sh
[2025-12-10 05:23:01] -rw-r--r-- 1 boincer umatlas       100 Dec  9 21:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-10 05:23:01] -rwxr-xr-x 1 boincer umatlas      7986 Dec  9 21:54 run_atlas
[2025-12-10 05:23:01] -rw-r--r-- 1 boincer umatlas       105 Dec  9 21:54 job.xml
[2025-12-10 05:23:01] -rw-r--r-- 2 boincer umatlas 321613789 Dec  9 21:54 EVNT.47860599._000001.pool.root.1
[2025-12-10 05:23:01] -rw-r--r-- 2 boincer umatlas     15847 Dec  9 21:54 start_atlas.sh
[2025-12-10 05:23:01] drwxrwx--x 2 boincer umatlas      4096 Dec  9 21:54 shared
[2025-12-10 05:23:01] -rw-r--r-- 2 boincer umatlas    592579 Dec  9 21:54 input.tar.gz
[2025-12-10 05:23:01] -rw-r--r-- 1 boincer umatlas         0 Dec  9 21:54 boinc_lockfile
[2025-12-10 05:23:01] -rw-r--r-- 1 boincer umatlas      2849 Dec  9 21:54 pandaJob.out
[2025-12-10 05:23:01] -rw------- 1 boincer umatlas        57 Dec  9 21:54 setup.sh.local
[2025-12-10 05:23:01] -rw------- 1 boincer umatlas    979207 Dec  9 21:54 agis_schedconf.cvmfs.json
[2025-12-10 05:23:01] drwx------ 5 boincer umatlas      4096 Dec  9 21:54 pilot3
[2025-12-10 05:23:01] -rw-r--r-- 1 boincer umatlas       533 Dec 10 05:15 boinc_task_state.xml
[2025-12-10 05:23:01] -rw-r--r-- 1 boincer umatlas      5911 Dec 10 05:20 init_data.xml
[2025-12-10 05:23:01] -rw------- 1 boincer umatlas 612007554 Dec 10 05:21 HITS.47860601._000033.pool.root.1
[2025-12-10 05:23:01] -rw------- 1 boincer umatlas      1065 Dec 10 05:22 memory_monitor_summary.json
[2025-12-10 05:23:01] -rw------- 1 boincer umatlas   1516240 Dec 10 05:22 agis_ddmendpoints.agis.ALL.json
[2025-12-10 05:23:01] -rw------- 1 boincer umatlas   1828724 Dec 10 05:22 log.47860601._000033.job.log.tgz.1
[2025-12-10 05:23:01] -rw------- 1 boincer umatlas     28245 Dec 10 05:22 heartbeat.json
[2025-12-10 05:23:01] -rw-r--r-- 1 boincer umatlas      8192 Dec 10 05:22 boinc_mmap_file
[2025-12-10 05:23:01] -rw-r--r-- 1 boincer umatlas        29 Dec 10 05:22 wrapper_checkpoint.txt
[2025-12-10 05:23:01] -rw------- 1 boincer umatlas        95 Dec 10 05:23 pilot_heartbeat.json
[2025-12-10 05:23:01] -rw------- 1 boincer umatlas       745 Dec 10 05:23 pilotlog.txt
[2025-12-10 05:23:01] -rw------- 1 boincer umatlas   3729455 Dec 10 05:23 log.47860601._000033.job.log.1
[2025-12-10 05:23:01] -rw------- 1 boincer umatlas       353 Dec 10 05:23 output.list
[2025-12-10 05:23:01] -rw-r--r-- 1 boincer umatlas       620 Dec 10 05:23 runtime_log
[2025-12-10 05:23:01] -rw------- 1 boincer umatlas   5601280 Dec 10 05:23 result.tar.gz
[2025-12-10 05:23:01] -rw-r--r-- 1 boincer umatlas      9338 Dec 10 05:23 runtime_log.err
[2025-12-10 05:23:01] -rw------- 1 boincer umatlas       666 Dec 10 05:23 o6XNDmdVPn8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCZQKDmZ11aHn.diag
[2025-12-10 05:23:01] -rw-r--r-- 1 boincer umatlas     21423 Dec 10 05:23 stderr.txt
[2025-12-10 05:23:01] HITS file was successfully produced:
[2025-12-10 05:23:01] -rw------- 1 boincer umatlas 612007554 Dec 10 05:21 shared/HITS.pool.root.1
[2025-12-10 05:23:01]  *** Contents of shared directory: ***
[2025-12-10 05:23:01] total 917816
[2025-12-10 05:23:01] -rw-r--r-- 2 boincer umatlas 321613789 Dec  9 21:54 ATLAS.root_0
[2025-12-10 05:23:01] -rw-r--r-- 2 boincer umatlas     15847 Dec  9 21:54 start_atlas.sh
[2025-12-10 05:23:01] -rw-r--r-- 2 boincer umatlas    592579 Dec  9 21:54 input.tar.gz
[2025-12-10 05:23:01] -rw------- 1 boincer umatlas 612007554 Dec 10 05:21 HITS.pool.root.1
[2025-12-10 05:23:01] -rw------- 1 boincer umatlas   5601280 Dec 10 05:23 result.tar.gz
05:23:03 (16061): run_atlas exited; CPU time 204594.561657
05:23:03 (16061): called boinc_finish(0)

</stderr_txt>
]]>

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