Stderr output

<core_client_version>7.23.1</core_client_version>
<![CDATA[
<stderr_txt>
22:21:51 (1078877): wrapper (7.7.26015): starting
22:21:51 (1078877): wrapper: running run_atlas (--nthreads 10)
[2025-12-10 22:21:51] Arguments: --nthreads 10
[2025-12-10 22:21:51] Threads: 10
[2025-12-10 22:21:51] Checking for CVMFS
[2025-12-10 22:21:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-10 22:21:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-10 22:21:51] Running cvmfs_config stat atlas.cern.ch
[2025-12-10 22:21:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-10 22:21:51] 2.13.3.0 11319 6677 65012 153872 2 87 2066523 4096000 11986 130560 0 994838472 99.999 605758 503 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-10 22:21:51] CVMFS is ok
[2025-12-10 22:21:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-10 22:21:51] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-10 22:21:51] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-10 22:21:51] Further information can be found at the LHC@home message board.
[2025-12-10 22:21:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-10 22:21:51] Checking for apptainer binary...
[2025-12-10 22:21:51] apptainer is not installed, using version from CVMFS
[2025-12-10 22:21:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-10 22:21:52] 7950x-linux
[2025-12-10 22:21:52] apptainer works
[2025-12-10 22:21:52] Set ATHENA_PROC_NUMBER=10
[2025-12-10 22:21:52] Set ATHENA_CORE_NUMBER=10
[2025-12-10 22:21:52] Starting ATLAS job with PandaID=6898412850
[2025-12-10 22:21:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc543/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-11 16:45:03]  *** The last 200 lines of the pilot log: ***
[2025-12-11 16:45:03] 2025-12-12 00:43:59,570 | INFO     | time since job start (66112s) is within the limit (174528.0s)
[2025-12-11 16:45:03] 2025-12-12 00:44:00,797 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-11 16:45:03] 2025-12-12 00:44:00,800 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4000.0048125000008
[2025-12-11 16:45:03] 2025-12-12 00:44:00,803 | INFO     | using path: /var/lib/multiboinc/boinc543/slots/1/PanDA_Pilot-6898412850/memory_monitor_summary.json (trf name=prmon)
[2025-12-11 16:45:03] 2025-12-12 00:44:00,803 | INFO     | extracted standard info from prmon json
[2025-12-11 16:45:03] 2025-12-12 00:44:00,803 | INFO     | extracted standard memory fields from prmon json
[2025-12-11 16:45:03] 2025-12-12 00:44:00,803 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-11 16:45:03] 2025-12-12 00:44:00,814 | INFO     | fitting pss+swap vs Time
[2025-12-11 16:45:03] 2025-12-12 00:44:00,815 | INFO     | sum of square deviations: 394971425962.8193
[2025-12-11 16:45:03] 2025-12-12 00:44:00,830 | INFO     | sum of deviations: 2480586805279.6826
[2025-12-11 16:45:03] 2025-12-12 00:44:00,830 | INFO     | mean x: 1765467187.5129151
[2025-12-11 16:45:03] 2025-12-12 00:44:00,830 | INFO     | mean y: 3173852.594095941
[2025-12-11 16:45:03] 2025-12-12 00:44:00,830 | INFO     | intersect: -11084703200.342447
[2025-12-11 16:45:03] 2025-12-12 00:44:00,831 | INFO     | chi2: 5.2124544114915325
[2025-12-11 16:45:03] 2025-12-12 00:44:00,831 | INFO     | sum of square deviations: 389531123577.8188
[2025-12-11 16:45:03] 2025-12-12 00:44:00,852 | INFO     | sum of deviations: 2848366290295.455
[2025-12-11 16:45:03] 2025-12-12 00:44:00,852 | INFO     | mean x: 1765467035.012975
[2025-12-11 16:45:03] 2025-12-12 00:44:00,852 | INFO     | mean y: 3184155.0389249306
[2025-12-11 16:45:03] 2025-12-12 00:44:00,852 | INFO     | intersect: -12906430724.94951
[2025-12-11 16:45:03] 2025-12-12 00:44:00,854 | INFO     | chi2: 2.3921042893611166
[2025-12-11 16:45:03] 2025-12-12 00:44:00,858 | INFO     | current chi2=2.3921042893611166 (change=54.107909623393304 %)
[2025-12-11 16:45:03] 2025-12-12 00:44:00,858 | INFO     | sum of square deviations: 384141008180.3174
[2025-12-11 16:45:03] 2025-12-12 00:44:00,871 | INFO     | sum of deviations: 2875571308730.089
[2025-12-11 16:45:03] 2025-12-12 00:44:00,871 | INFO     | mean x: 1765466882.5130353
[2025-12-11 16:45:03] 2025-12-12 00:44:00,871 | INFO     | mean y: 3184920.7439478585
[2025-12-11 16:45:03] 2025-12-12 00:44:00,871 | INFO     | intersect: -13212602526.465027
[2025-12-11 16:45:03] 2025-12-12 00:44:00,872 | INFO     | chi2: 2.2711227594820116
[2025-12-11 16:45:03] 2025-12-12 00:44:00,872 | INFO     | current chi2=2.2711227594820116 (change=5.0575357611777365 %)
[2025-12-11 16:45:03] 2025-12-12 00:44:00,872 | INFO     | right removable region: 1073
[2025-12-11 16:45:03] 2025-12-12 00:44:00,872 | INFO     | sum of square deviations: 389531115037.8188
[2025-12-11 16:45:03] 2025-12-12 00:44:00,885 | INFO     | sum of deviations: 2191907721242.0059
[2025-12-11 16:45:03] 2025-12-12 00:44:00,885 | INFO     | mean x: 1765467340.012975
[2025-12-11 16:45:03] 2025-12-12 00:44:00,885 | INFO     | mean y: 3181933.4281742354
[2025-12-11 16:45:03] 2025-12-12 00:44:00,885 | INFO     | intersect: -9931175926.018612
[2025-12-11 16:45:03] 2025-12-12 00:44:00,886 | INFO     | chi2: 3.353827720829054
[2025-12-11 16:45:03] 2025-12-12 00:44:00,886 | INFO     | current chi2=3.353827720829054 (change=35.65741863496964 %)
[2025-12-11 16:45:03] 2025-12-12 00:44:00,886 | INFO     | sum of square deviations: 384140991100.3173
[2025-12-11 16:45:03] 2025-12-12 00:44:00,899 | INFO     | sum of deviations: 2091669675207.6565
[2025-12-11 16:45:03] 2025-12-12 00:44:00,899 | INFO     | mean x: 1765467492.5130353
[2025-12-11 16:45:03] 2025-12-12 00:44:00,899 | INFO     | mean y: 3184769.0605214154
[2025-12-11 16:45:03] 2025-12-12 00:44:00,899 | INFO     | intersect: -9609886739.077642
[2025-12-11 16:45:03] 2025-12-12 00:44:00,900 | INFO     | chi2: 3.2599317178268246
[2025-12-11 16:45:03] 2025-12-12 00:44:00,900 | INFO     | current chi2=3.2599317178268246 (change=2.799666852864428 %)
[2025-12-11 16:45:03] 2025-12-12 00:44:00,900 | INFO     | left removable region: 20
[2025-12-11 16:45:03] 2025-12-12 00:44:00,900 | INFO     | sum of square deviations: 362045282783.81366
[2025-12-11 16:45:03] 2025-12-12 00:44:00,912 | INFO     | sum of deviations: 2338862453690.3335
[2025-12-11 16:45:03] 2025-12-12 00:44:00,912 | INFO     | mean x: 1765467462.0132954
[2025-12-11 16:45:03] 2025-12-12 00:44:00,912 | INFO     | mean y: 3200091.547958215
[2025-12-11 16:45:03] 2025-12-12 00:44:00,913 | INFO     | intersect: -11401963175.226332
[2025-12-11 16:45:03] 2025-12-12 00:44:00,913 | INFO     | chi2: 0.2458905698842303
[2025-12-11 16:45:03] 2025-12-12 00:44:00,913 | INFO     | current memory leak: 6.46 B/s (using 1053 data points, chi2=0.25)
[2025-12-11 16:45:03] 2025-12-12 00:44:00,914 | INFO     | could have reported an average CPU frequency of 3999 MHz (40 samples)
[2025-12-11 16:45:03] 2025-12-12 00:44:00,914 | INFO     | ..............................
[2025-12-11 16:45:03] 2025-12-12 00:44:00,914 | INFO     | . Timing measurements:
[2025-12-11 16:45:03] 2025-12-12 00:44:00,914 | INFO     | . get job = 0 s
[2025-12-11 16:45:03] 2025-12-12 00:44:00,914 | INFO     | . initial setup = 3 s
[2025-12-11 16:45:03] 2025-12-12 00:44:00,914 | INFO     | . payload setup = 6 s
[2025-12-11 16:45:03] 2025-12-12 00:44:00,914 | INFO     | . stage-in = 0 s
[2025-12-11 16:45:03] 2025-12-12 00:44:00,914 | INFO     | . payload execution = 66072 s
[2025-12-11 16:45:03] 2025-12-12 00:44:00,914 | INFO     | . stage-out = 3 s
[2025-12-11 16:45:03] 2025-12-12 00:44:00,914 | INFO     | . log creation = 0 s
[2025-12-11 16:45:03] 2025-12-12 00:44:00,914 | INFO     | ..............................
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | 
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | job summary report
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | --------------------------------------------------
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | PanDA job id: 6898412850
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | task id: 47556173
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | errors: (none)
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | pilot state: finished 
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | transexitcode: 0
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | exeerrorcode: 0
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | exeerrordiag: 
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | exitcode: 0
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | exitmsg: OK
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | cpuconsumptiontime: 137843 s
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | nevents: 1000
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | neventsw: 0
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | pid: 1096879
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | pgrp: 1096879
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | corecount: 10
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | event service: False
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | sizes: {0: 2284483, 5: 2284745, 11: 2284801, 66083: 2340281, 66087: 2349303, 66089: 2349359, 66097: 2349733}
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | --------------------------------------------------
[2025-12-11 16:45:03] 2025-12-12 00:44:01,461 | INFO     | 
[2025-12-11 16:45:03] 2025-12-12 00:44:01,462 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc543/slots/1
[2025-12-11 16:45:03] 2025-12-12 00:44:01,488 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-11 16:45:03] 2025-12-12 00:44:01,488 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-11 16:45:03] 2025-12-12 00:44:01,488 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-11 16:45:03] 2025-12-12 00:44:01,488 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-11 16:45:03] 2025-12-12 00:44:01,488 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-11 16:45:03] 2025-12-12 00:44:01,488 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-11 16:45:03] 2025-12-12 00:44:01,488 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-11 16:45:03] 2025-12-12 00:44:01,488 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-11 16:45:03] 2025-12-12 00:44:01,488 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-11 16:45:03] 2025-12-12 00:44:01,488 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-11 16:45:03] 2025-12-12 00:44:01,488 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-11 16:45:03] 2025-12-12 00:44:01,488 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-11 16:45:03] 2025-12-12 00:44:01,488 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-11 16:45:03] 2025-12-12 00:44:01,488 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-11 16:45:03] 2025-12-12 00:44:01,488 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-11 16:45:03] 2025-12-12 00:44:01,488 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-11 16:45:03] 2025-12-12 00:44:01,488 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-11 16:45:03] 2025-12-12 00:44:01,488 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-11 16:45:03] 2025-12-12 00:44:01,489 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-11 16:45:03] 2025-12-12 00:44:01,489 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-11 16:45:03] 2025-12-12 00:44:01,489 | INFO     | job 6898412850 has completed (purged errors)
[2025-12-11 16:45:03] 2025-12-12 00:44:01,489 | INFO     | overall cleanup function is called
[2025-12-11 16:45:03] 2025-12-12 00:44:02,504 | INFO     | --- collectZombieJob: --- 10, [1096879]
[2025-12-11 16:45:03] 2025-12-12 00:44:02,504 | INFO     | zombie collector waiting for pid 1096879
[2025-12-11 16:45:03] 2025-12-12 00:44:02,504 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-11 16:45:03] 2025-12-12 00:44:02,504 | INFO     | collected zombie processes
[2025-12-11 16:45:03] 2025-12-12 00:44:02,504 | INFO     | will attempt to kill all subprocesses of pid=1096879
[2025-12-11 16:45:03] 2025-12-12 00:44:02,741 | INFO     | process IDs to be killed: [1096879] (in reverse order)
[2025-12-11 16:45:03] 2025-12-12 00:44:02,867 | WARNING  | found no corresponding commands to process id(s)
[2025-12-11 16:45:03] 2025-12-12 00:44:02,867 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-11 16:45:03] 2025-12-12 00:44:02,872 | INFO     | did not find any defunct processes belonging to 1096879
[2025-12-11 16:45:03] 2025-12-12 00:44:02,877 | INFO     | did not find any defunct processes belonging to 1096879
[2025-12-11 16:45:03] 2025-12-12 00:44:02,877 | INFO     | ready for new job
[2025-12-11 16:45:03] 2025-12-12 00:44:02,877 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-11 16:45:03] 2025-12-12 00:44:02,882 | INFO     | ***************************************
[2025-12-11 16:45:03] 2025-12-12 00:44:02,882 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-11 16:45:03] 2025-12-12 00:44:02,882 | INFO     | ***************************************
[2025-12-11 16:45:03] 2025-12-12 00:44:02,882 | INFO     | 
[2025-12-11 16:45:03] 2025-12-12 00:44:02,883 | INFO     | architecture information:
[2025-12-11 16:45:03] 2025-12-12 00:44:02,883 | INFO     | executing command: cat /etc/os-release
[2025-12-11 16:45:03] 2025-12-12 00:44:02,900 | INFO     | cat /etc/os-release:
[2025-12-11 16:45:03] NAME="CentOS Linux"
[2025-12-11 16:45:03] VERSION="7 (Core)"
[2025-12-11 16:45:03] ID="centos"
[2025-12-11 16:45:03] ID_LIKE="rhel fedora"
[2025-12-11 16:45:03] VERSION_ID="7"
[2025-12-11 16:45:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-11 16:45:03] ANSI_COLOR="0;31"
[2025-12-11 16:45:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-11 16:45:03] HOME_URL="https://www.centos.org/"
[2025-12-11 16:45:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-11 16:45:03] 
[2025-12-11 16:45:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-11 16:45:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-11 16:45:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-11 16:45:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-11 16:45:03] 
[2025-12-11 16:45:03] 2025-12-12 00:44:02,900 | INFO     | ***************************************
[2025-12-11 16:45:03] 2025-12-12 00:44:03,402 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc543/slots/1
[2025-12-11 16:45:03] 2025-12-12 00:44:03,427 | INFO     | sufficient remaining disk space (201234317312 B)
[2025-12-11 16:45:03] 2025-12-12 00:44:03,427 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-11 16:45:03] 2025-12-12 00:44:03,427 | INFO     | current server update state: UPDATING_FINAL
[2025-12-11 16:45:03] 2025-12-12 00:44:03,427 | INFO     | update_server=False
[2025-12-11 16:45:03] 2025-12-12 00:44:03,427 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-11 16:45:03] 2025-12-12 00:44:03,431 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-11 16:45:03] 2025-12-12 00:44:03,503 | INFO     | all data control threads have been joined
[2025-12-11 16:45:03] 2025-12-12 00:44:03,571 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-11 16:45:03] 2025-12-12 00:44:03,718 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-11 16:45:03] 2025-12-12 00:44:03,718 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-11 16:45:03] 2025-12-12 00:44:03,718 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-11 16:45:03] 2025-12-12 00:44:03,718 | INFO     | will abort loop
[2025-12-11 16:45:03] 2025-12-12 00:44:04,432 | INFO     | [job] retrieve thread has finished
[2025-12-11 16:45:03] 2025-12-12 00:44:04,509 | INFO     | [data] control thread has finished
[2025-12-11 16:45:03] 2025-12-12 00:44:04,536 | INFO     | all job control threads have been joined
[2025-12-11 16:45:03] 2025-12-12 00:44:04,538 | INFO     | [payload] failed_post thread has finished
[2025-12-11 16:45:03] 2025-12-12 00:44:04,723 | INFO     | [job] job monitor thread has finished
[2025-12-11 16:45:03] 2025-12-12 00:44:04,734 | INFO     | all payload control threads have been joined
[2025-12-11 16:45:03] 2025-12-12 00:44:04,975 | INFO     | [job] create_data_payload thread has finished
[2025-12-11 16:45:03] 2025-12-12 00:44:05,059 | INFO     | [job] validate thread has finished
[2025-12-11 16:45:03] 2025-12-12 00:44:05,175 | INFO     | [payload] validate_post thread has finished
[2025-12-11 16:45:03] 2025-12-12 00:44:05,229 | INFO     | [payload] execute_payloads thread has finished
[2025-12-11 16:45:03] 2025-12-12 00:44:05,240 | INFO     | [payload] validate_pre thread has finished
[2025-12-11 16:45:03] 2025-12-12 00:44:05,436 | INFO     | [data] copytool_out thread has finished
[2025-12-11 16:45:03] 2025-12-12 00:44:05,541 | INFO     | [job] control thread has finished
[2025-12-11 16:45:03] 2025-12-12 00:44:05,631 | INFO     | [data] copytool_in thread has finished
[2025-12-11 16:45:03] 2025-12-12 00:44:05,739 | INFO     | [payload] control thread has finished
[2025-12-11 16:45:03] 2025-12-12 00:44:05,984 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-11 16:45:03] 2025-12-12 00:44:06,989 | INFO     | [job] queue monitor thread has finished
[2025-12-11 16:45:03] 2025-12-12 00:44:07,576 | INFO     | [data] queue_monitor thread has finished
[2025-12-11 16:45:03] 2025-12-12 00:44:13,919 | INFO     | job.realtimelogging is not enabled
[2025-12-11 16:45:03] 2025-12-12 00:44:14,924 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-11 16:45:03] 2025-12-12 00:44:32,925 | INFO     | PID=1090061 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-11 16:45:03] 2025-12-12 00:44:32,925 | INFO     | .. there are 14 such processes running
[2025-12-11 16:45:03] 2025-12-12 00:44:32,926 | INFO     | found 0 job(s) in 20 queues
[2025-12-11 16:45:03] 2025-12-12 00:44:32,926 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-11 16:45:03] 2025-12-12 00:44:32,926 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-11 16:45:03] 2025-12-12 00:44:56,779 | INFO     | [monitor] cgroup control has ended
[2025-12-11 16:45:03] 2025-12-12 00:44:58,587 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 133949880473408)>', '<ExcThread(monitor, started 133948881495808)>']
[2025-12-11 16:45:03] 2025-12-12 00:44:59,059 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-11 16:45:03] 2025-12-12 00:44:59,059 | INFO     | [monitor] control thread has ended
[2025-12-11 16:45:03] 2025-12-12 00:45:03,614 | INFO     | all workflow threads have been joined
[2025-12-11 16:45:03] 2025-12-12 00:45:03,614 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-11 16:45:03] 2025-12-12 00:45:03,616 | INFO     | traces error code: 0
[2025-12-11 16:45:03] 2025-12-12 00:45:03,616 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-11 16:45:03] 2025-12-12 00:45:03,742 [wrapper] ==== pilot stdout END ====
[2025-12-11 16:45:03] 2025-12-12 00:45:03,744 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-11 16:45:03] 2025-12-12 00:45:03,745 [wrapper] pilotpid: 1090061
[2025-12-11 16:45:03] 2025-12-12 00:45:03,746 [wrapper] Pilot exit status: 0
[2025-12-11 16:45:03] 2025-12-12 00:45:03,763 [wrapper] pandaids: 6898412850
[2025-12-11 16:45:03] 2025-12-12 00:45:03,810 [wrapper] cleanup supervisor_pilot 3070876 1090062
[2025-12-11 16:45:03] 2025-12-12 00:45:03,812 [wrapper] Test setup, not cleaning
[2025-12-11 16:45:03] 2025-12-12 00:45:03,814 [wrapper] apfmon messages muted
[2025-12-11 16:45:03] 2025-12-12 00:45:03,815 [wrapper] ==== wrapper stdout END ====
[2025-12-11 16:45:03] 2025-12-12 00:45:03,817 [wrapper] ==== wrapper stderr END ====
[2025-12-11 16:45:03]  *** Error codes and diagnostics ***
[2025-12-11 16:45:03]     "exeErrorCode": 0,
[2025-12-11 16:45:03]     "exeErrorDiag": "",
[2025-12-11 16:45:03]     "pilotErrorCode": 0,
[2025-12-11 16:45:03]     "pilotErrorDiag": "",
[2025-12-11 16:45:03]  *** Listing of results directory ***
[2025-12-11 16:45:03] total 1328088
[2025-12-11 16:45:03] -rw-r--r-- 1 root root    579449 Dec  9 11:53 pilot3.tar.gz
[2025-12-11 16:45:03] -rw-r--r-- 1 root root      5112 Dec  9 11:55 queuedata.json
[2025-12-11 16:45:03] -rwx------ 1 4871 1028     36292 Dec  9 11:57 runpilot2-wrapper.sh
[2025-12-11 16:45:03] -rw-r--r-- 1 root root       100 Dec 10 22:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-11 16:45:03] -rwxr-xr-x 1 root root      7986 Dec 10 22:21 run_atlas
[2025-12-11 16:45:03] -rw-r--r-- 1 root root       105 Dec 10 22:21 job.xml
[2025-12-11 16:45:03] -rw-r--r-- 2 root root 409510761 Dec 10 22:21 EVNT.47483658._003212.pool.root.1
[2025-12-11 16:45:03] -rw-r--r-- 1 root root      7076 Dec 10 22:21 init_data.xml
[2025-12-11 16:45:03] -rw-r--r-- 2 root root     15847 Dec 10 22:21 start_atlas.sh
[2025-12-11 16:45:03] drwxrwx--x 2 root root      4096 Dec 10 22:21 shared
[2025-12-11 16:45:03] -rw-r--r-- 2 root root    592582 Dec 10 22:21 input.tar.gz
[2025-12-11 16:45:03] -rw-r--r-- 1 root root         0 Dec 10 22:21 boinc_lockfile
[2025-12-11 16:45:03] -rw-r--r-- 1 root root      2787 Dec 10 22:21 pandaJob.out
[2025-12-11 16:45:03] -rw------- 1 root root    992124 Dec 10 22:22 agis_schedconf.cvmfs.json
[2025-12-11 16:45:03] drwxr-xr-x 5  320  320      4096 Dec 10 22:22 pilot3
[2025-12-11 16:45:03] -rw-r--r-- 1 root root       533 Dec 11 16:36 boinc_task_state.xml
[2025-12-11 16:45:03] -rw------- 1 root root 922893298 Dec 11 16:43 HITS.47556173._001683.pool.root.1
[2025-12-11 16:45:03] -rw------- 1 root root      1055 Dec 11 16:43 memory_monitor_summary.json
[2025-12-11 16:45:03] -rw------- 1 root root   1516240 Dec 11 16:43 agis_ddmendpoints.agis.ALL.json
[2025-12-11 16:45:03] -rw------- 1 root root   2427108 Dec 11 16:43 log.47556173._001683.job.log.tgz.1
[2025-12-11 16:45:03] -rw------- 1 root root      8610 Dec 11 16:44 heartbeat.json
[2025-12-11 16:45:03] -rw------- 1 root root        95 Dec 11 16:44 pilot_heartbeat.json
[2025-12-11 16:45:03] -rw-r--r-- 1 root root        29 Dec 11 16:45 wrapper_checkpoint.txt
[2025-12-11 16:45:03] -rw-r--r-- 1 root root      8192 Dec 11 16:45 boinc_mmap_file
[2025-12-11 16:45:03] -rw------- 1 root root      5097 Dec 11 16:45 pilotlog.txt
[2025-12-11 16:45:03] -rw------- 1 root root   9389505 Dec 11 16:45 log.47556173._001683.job.log.1
[2025-12-11 16:45:03] -rw------- 1 root root       353 Dec 11 16:45 output.list
[2025-12-11 16:45:03] -rw-r--r-- 1 root root       620 Dec 11 16:45 runtime_log
[2025-12-11 16:45:03] -rw------- 1 root root  11837440 Dec 11 16:45 result.tar.gz
[2025-12-11 16:45:03] -rw-r--r-- 1 root root      9021 Dec 11 16:45 runtime_log.err
[2025-12-11 16:45:03] -rw------- 1 root root       663 Dec 11 16:45 FRhLDmO1In8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmq1MKDmqGSPVn.diag
[2025-12-11 16:45:03] -rw-r--r-- 1 root root     21315 Dec 11 16:45 stderr.txt
[2025-12-11 16:45:03] HITS file was successfully produced:
[2025-12-11 16:45:03] -rw------- 1 root root 922893298 Dec 11 16:43 shared/HITS.pool.root.1
[2025-12-11 16:45:03]  *** Contents of shared directory: ***
[2025-12-11 16:45:03] total 1313344
[2025-12-11 16:45:03] -rw-r--r-- 2 root root 409510761 Dec 10 22:21 ATLAS.root_0
[2025-12-11 16:45:03] -rw-r--r-- 2 root root     15847 Dec 10 22:21 start_atlas.sh
[2025-12-11 16:45:03] -rw-r--r-- 2 root root    592582 Dec 10 22:21 input.tar.gz
[2025-12-11 16:45:03] -rw------- 1 root root 922893298 Dec 11 16:43 HITS.pool.root.1
[2025-12-11 16:45:03] -rw------- 1 root root  11837440 Dec 11 16:45 result.tar.gz
16:45:05 (1078877): run_atlas exited; CPU time 137936.620024
16:45:05 (1078877): called boinc_finish(0)

</stderr_txt>
]]>

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