Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:58:51 (436): wrapper (7.7.26015): starting
08:58:51 (436): wrapper: running run_atlas (--nthreads 8)
[2025-12-09 08:58:51] Arguments: --nthreads 8
[2025-12-09 08:58:51] Threads: 8
[2025-12-09 08:58:51] Checking for CVMFS
[2025-12-09 08:58:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-09 08:58:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-09 08:58:51] Running cvmfs_config stat atlas.cern.ch
[2025-12-09 08:58:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-09 08:58:51] 2.11.2.0 2850 54605 90016 153807 2 1 18274026 20275200 1 130560 0 10394077 99.631 4505682 22139 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-09 08:58:51] CVMFS is ok
[2025-12-09 08:58:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-09 08:58:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-09 08:58:51] Further information can be found at the LHC@home message board.
[2025-12-09 08:58:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-09 08:58:51] Checking for apptainer binary...
[2025-12-09 08:58:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-09 08:58:51] Running /usr/bin/apptainer --version
[2025-12-09 08:58:51] apptainer version 1.3.2-1.el7
[2025-12-09 08:58:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-09 08:58:53] c-204-4.aglt2.org
[2025-12-09 08:58:53] apptainer works
[2025-12-09 08:58:53] Set ATHENA_PROC_NUMBER=8
[2025-12-09 08:58:53] Set ATHENA_CORE_NUMBER=8
[2025-12-09 08:58:53] Starting ATLAS job with PandaID=6924335906
[2025-12-09 08:58:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-09 11:43:35]  *** The last 200 lines of the pilot log: ***
[2025-12-09 11:43:35] 2025-12-09 16:42:57,669 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-09 11:43:35] 2025-12-09 16:42:57,861 | INFO     | PID=4646 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-09 11:43:35] 2025-12-09 16:42:58,862 | INFO     | time since job start (9824s) is within the limit (174528.0s)
[2025-12-09 11:43:35] 2025-12-09 16:42:59,211 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-09 11:43:35] 2025-12-09 16:42:59,214 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-12-09 11:43:35] 2025-12-09 16:42:59,216 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6924335906/memory_monitor_summary.json (trf name=prmon)
[2025-12-09 11:43:35] 2025-12-09 16:42:59,217 | INFO     | extracted standard info from prmon json
[2025-12-09 11:43:35] 2025-12-09 16:42:59,218 | INFO     | extracted standard memory fields from prmon json
[2025-12-09 11:43:35] 2025-12-09 16:42:59,218 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-09 11:43:35] 2025-12-09 16:42:59,218 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-09 11:43:35] 2025-12-09 16:42:59,218 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-09 11:43:35] 2025-12-09 16:42:59,222 | INFO     | fitting pss+swap vs Time
[2025-12-09 11:43:35] 2025-12-09 16:42:59,222 | INFO     | sum of square deviations: 1294014960.0
[2025-12-09 11:43:35] 2025-12-09 16:42:59,223 | INFO     | sum of deviations: 9064938001.0
[2025-12-09 11:43:35] 2025-12-09 16:42:59,223 | INFO     | mean x: 1765293666.0
[2025-12-09 11:43:35] 2025-12-09 16:42:59,223 | INFO     | mean y: 2506285.304347826
[2025-12-09 11:43:35] 2025-12-09 16:42:59,224 | INFO     | intersect: -12363871330.490759
[2025-12-09 11:43:35] 2025-12-09 16:42:59,224 | INFO     | chi2: 2.1872839825770276
[2025-12-09 11:43:35] 2025-12-09 16:42:59,224 | INFO     | sum of square deviations: 1177156955.0
[2025-12-09 11:43:35] 2025-12-09 16:42:59,225 | INFO     | sum of deviations: 19361253752.5
[2025-12-09 11:43:35] 2025-12-09 16:42:59,225 | INFO     | mean x: 1765293513.5
[2025-12-09 11:43:35] 2025-12-09 16:42:59,225 | INFO     | mean y: 2519367.25
[2025-12-09 11:43:35] 2025-12-09 16:42:59,226 | INFO     | intersect: -29032092811.98636
[2025-12-09 11:43:35] 2025-12-09 16:42:59,226 | INFO     | chi2: 1.4163690200601577
[2025-12-09 11:43:35] 2025-12-09 16:42:59,226 | INFO     | current chi2=1.4163690200601577 (change=35.24530736098514 %)
[2025-12-09 11:43:35] 2025-12-09 16:42:59,226 | INFO     | sum of square deviations: 1067554900.0
[2025-12-09 11:43:35] 2025-12-09 16:42:59,227 | INFO     | sum of deviations: 18657130599.999996
[2025-12-09 11:43:35] 2025-12-09 16:42:59,227 | INFO     | mean x: 1765293361.0
[2025-12-09 11:43:35] 2025-12-09 16:42:59,228 | INFO     | mean y: 2518387.1721854303
[2025-12-09 11:43:35] 2025-12-09 16:42:59,228 | INFO     | intersect: -30848643256.589596
[2025-12-09 11:43:35] 2025-12-09 16:42:59,228 | INFO     | chi2: 1.417854424540363
[2025-12-09 11:43:35] 2025-12-09 16:42:59,229 | INFO     | current chi2=1.417854424540363 (change=-0.10487411537299779 %)
[2025-12-09 11:43:35] 2025-12-09 16:42:59,229 | INFO     | right removable region: 150
[2025-12-09 11:43:35] 2025-12-09 16:42:59,229 | INFO     | sum of square deviations: 1177156955.0
[2025-12-09 11:43:35] 2025-12-09 16:42:59,230 | INFO     | sum of deviations: -13779071955.5
[2025-12-09 11:43:35] 2025-12-09 16:42:59,230 | INFO     | mean x: 1765293818.5
[2025-12-09 11:43:35] 2025-12-09 16:42:59,230 | INFO     | mean y: 2535645.2884615385
[2025-12-09 11:43:35] 2025-12-09 16:42:59,230 | INFO     | intersect: 20665974317.925667
[2025-12-09 11:43:35] 2025-12-09 16:42:59,230 | INFO     | chi2: 0.8594670194043118
[2025-12-09 11:43:35] 2025-12-09 16:42:59,231 | INFO     | current chi2=0.8594670194043118 (change=60.70619881778223 %)
[2025-12-09 11:43:35] 2025-12-09 16:42:59,231 | INFO     | sum of square deviations: 1067554900.0
[2025-12-09 11:43:35] 2025-12-09 16:42:59,232 | INFO     | sum of deviations: -10517279071.0
[2025-12-09 11:43:35] 2025-12-09 16:42:59,232 | INFO     | mean x: 1765293971.0
[2025-12-09 11:43:35] 2025-12-09 16:42:59,232 | INFO     | mean y: 2531044.205298013
[2025-12-09 11:43:35] 2025-12-09 16:42:59,232 | INFO     | intersect: 17393757795.504723
[2025-12-09 11:43:35] 2025-12-09 16:42:59,232 | INFO     | chi2: 0.8384654137730855
[2025-12-09 11:43:35] 2025-12-09 16:42:59,232 | INFO     | current chi2=0.8384654137730855 (change=2.443561551178815 %)
[2025-12-09 11:43:35] 2025-12-09 16:42:59,233 | INFO     | left removable region: 20
[2025-12-09 11:43:35] 2025-12-09 16:42:59,233 | INFO     | sum of square deviations: 681212772.5
[2025-12-09 11:43:35] 2025-12-09 16:42:59,233 | INFO     | sum of deviations: 2715233738.5000024
[2025-12-09 11:43:35] 2025-12-09 16:42:59,233 | INFO     | mean x: 1765293940.5
[2025-12-09 11:43:35] 2025-12-09 16:42:59,234 | INFO     | mean y: 2540580.4384615384
[2025-12-09 11:43:35] 2025-12-09 16:42:59,234 | INFO     | intersect: -7033712788.7175255
[2025-12-09 11:43:35] 2025-12-09 16:42:59,234 | INFO     | chi2: 0.0015269200887405932
[2025-12-09 11:43:35] 2025-12-09 16:42:59,234 | INFO     | current memory leak: 3.99 B/s (using 130 data points, chi2=0.00)
[2025-12-09 11:43:35] 2025-12-09 16:42:59,235 | INFO     | could have reported an average CPU frequency of 2017 MHz (9 samples)
[2025-12-09 11:43:35] 2025-12-09 16:42:59,235 | INFO     | ..............................
[2025-12-09 11:43:35] 2025-12-09 16:42:59,235 | INFO     | . Timing measurements:
[2025-12-09 11:43:35] 2025-12-09 16:42:59,235 | INFO     | . get job = 0 s
[2025-12-09 11:43:35] 2025-12-09 16:42:59,235 | INFO     | . initial setup = 3 s
[2025-12-09 11:43:35] 2025-12-09 16:42:59,235 | INFO     | . payload setup = 8 s
[2025-12-09 11:43:35] 2025-12-09 16:42:59,235 | INFO     | . stage-in = 0 s
[2025-12-09 11:43:35] 2025-12-09 16:42:59,235 | INFO     | . payload execution = 9786 s
[2025-12-09 11:43:35] 2025-12-09 16:42:59,236 | INFO     | . stage-out = 0 s
[2025-12-09 11:43:35] 2025-12-09 16:42:59,236 | INFO     | . log creation = 0 s
[2025-12-09 11:43:35] 2025-12-09 16:42:59,236 | INFO     | ..............................
[2025-12-09 11:43:35] 2025-12-09 16:42:59,552 | INFO     | 
[2025-12-09 11:43:35] 2025-12-09 16:42:59,552 | INFO     | job summary report
[2025-12-09 11:43:35] 2025-12-09 16:42:59,553 | INFO     | --------------------------------------------------
[2025-12-09 11:43:35] 2025-12-09 16:42:59,553 | INFO     | PanDA job id: 6924335906
[2025-12-09 11:43:35] 2025-12-09 16:42:59,553 | INFO     | task id: 47240594
[2025-12-09 11:43:35] 2025-12-09 16:42:59,553 | INFO     | errors: (none)
[2025-12-09 11:43:35] 2025-12-09 16:42:59,553 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-09 11:43:35] 2025-12-09 16:42:59,553 | INFO     | pilot state: finished 
[2025-12-09 11:43:35] 2025-12-09 16:42:59,554 | INFO     | transexitcode: 0
[2025-12-09 11:43:35] 2025-12-09 16:42:59,554 | INFO     | exeerrorcode: 0
[2025-12-09 11:43:35] 2025-12-09 16:42:59,554 | INFO     | exeerrordiag: 
[2025-12-09 11:43:35] 2025-12-09 16:42:59,554 | INFO     | exitcode: 0
[2025-12-09 11:43:35] 2025-12-09 16:42:59,554 | INFO     | exitmsg: OK
[2025-12-09 11:43:35] 2025-12-09 16:42:59,555 | INFO     | cpuconsumptiontime: 73828 s
[2025-12-09 11:43:35] 2025-12-09 16:42:59,555 | INFO     | nevents: 400
[2025-12-09 11:43:35] 2025-12-09 16:42:59,555 | INFO     | neventsw: 0
[2025-12-09 11:43:35] 2025-12-09 16:42:59,555 | INFO     | pid: 11085
[2025-12-09 11:43:35] 2025-12-09 16:42:59,555 | INFO     | pgrp: 11085
[2025-12-09 11:43:35] 2025-12-09 16:42:59,555 | INFO     | corecount: 8
[2025-12-09 11:43:35] 2025-12-09 16:42:59,556 | INFO     | event service: False
[2025-12-09 11:43:35] 2025-12-09 16:42:59,556 | INFO     | sizes: {0: 2283909, 1: 2284108, 7: 2284370, 12: 2284398, 9798: 2312885, 9799: 2322067, 9807: 2322269}
[2025-12-09 11:43:35] 2025-12-09 16:42:59,556 | INFO     | --------------------------------------------------
[2025-12-09 11:43:35] 2025-12-09 16:42:59,556 | INFO     | 
[2025-12-09 11:43:35] 2025-12-09 16:42:59,556 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-09 11:43:35] 2025-12-09 16:42:59,670 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-09 11:43:35] 2025-12-09 16:42:59,671 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-09 11:43:35] 2025-12-09 16:42:59,671 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-09 11:43:35] 2025-12-09 16:42:59,671 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-09 11:43:35] 2025-12-09 16:42:59,671 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-09 11:43:35] 2025-12-09 16:42:59,672 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-09 11:43:35] 2025-12-09 16:42:59,672 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-09 11:43:35] 2025-12-09 16:42:59,672 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-09 11:43:35] 2025-12-09 16:42:59,672 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-09 11:43:35] 2025-12-09 16:42:59,673 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-09 11:43:35] 2025-12-09 16:42:59,673 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-09 11:43:35] 2025-12-09 16:42:59,673 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-09 11:43:35] 2025-12-09 16:42:59,673 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-09 11:43:35] 2025-12-09 16:42:59,673 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-09 11:43:35] 2025-12-09 16:42:59,674 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-09 11:43:35] 2025-12-09 16:42:59,674 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-09 11:43:35] 2025-12-09 16:42:59,674 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-09 11:43:35] 2025-12-09 16:42:59,674 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-09 11:43:35] 2025-12-09 16:42:59,674 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-09 11:43:35] 2025-12-09 16:42:59,675 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-09 11:43:35] 2025-12-09 16:42:59,675 | INFO     | job 6924335906 has completed (purged errors)
[2025-12-09 11:43:35] 2025-12-09 16:42:59,675 | INFO     | overall cleanup function is called
[2025-12-09 11:43:35] 2025-12-09 16:43:00,678 | INFO     | --- collectZombieJob: --- 10, [11085]
[2025-12-09 11:43:35] 2025-12-09 16:43:00,678 | INFO     | zombie collector waiting for pid 11085
[2025-12-09 11:43:35] 2025-12-09 16:43:00,679 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-09 11:43:35] 2025-12-09 16:43:00,679 | INFO     | collected zombie processes
[2025-12-09 11:43:35] 2025-12-09 16:43:00,679 | INFO     | will attempt to kill all subprocesses of pid=11085
[2025-12-09 11:43:35] 2025-12-09 16:43:00,773 | INFO     | process IDs to be killed: [11085] (in reverse order)
[2025-12-09 11:43:35] 2025-12-09 16:43:00,832 | WARNING  | found no corresponding commands to process id(s)
[2025-12-09 11:43:35] 2025-12-09 16:43:00,833 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-09 11:43:35] 2025-12-09 16:43:00,837 | INFO     | did not find any defunct processes belonging to 11085
[2025-12-09 11:43:35] 2025-12-09 16:43:00,840 | INFO     | did not find any defunct processes belonging to 11085
[2025-12-09 11:43:35] 2025-12-09 16:43:00,840 | INFO     | ready for new job
[2025-12-09 11:43:35] 2025-12-09 16:43:00,841 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-09 11:43:35] 2025-12-09 16:43:00,843 | INFO     | ***************************************
[2025-12-09 11:43:35] 2025-12-09 16:43:00,843 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-09 11:43:35] 2025-12-09 16:43:00,843 | INFO     | ***************************************
[2025-12-09 11:43:35] 2025-12-09 16:43:00,843 | INFO     | 
[2025-12-09 11:43:35] 2025-12-09 16:43:00,844 | INFO     | architecture information:
[2025-12-09 11:43:35] 2025-12-09 16:43:00,844 | INFO     | executing command: cat /etc/os-release
[2025-12-09 11:43:35] 2025-12-09 16:43:00,862 | INFO     | cat /etc/os-release:
[2025-12-09 11:43:35] NAME="CentOS Linux"
[2025-12-09 11:43:35] VERSION="7 (Core)"
[2025-12-09 11:43:35] ID="centos"
[2025-12-09 11:43:35] ID_LIKE="rhel fedora"
[2025-12-09 11:43:35] VERSION_ID="7"
[2025-12-09 11:43:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-09 11:43:35] ANSI_COLOR="0;31"
[2025-12-09 11:43:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-09 11:43:35] HOME_URL="https://www.centos.org/"
[2025-12-09 11:43:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-09 11:43:35] 
[2025-12-09 11:43:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-09 11:43:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-09 11:43:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-09 11:43:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-09 11:43:35] 
[2025-12-09 11:43:35] 2025-12-09 16:43:00,862 | INFO     | ***************************************
[2025-12-09 11:43:35] 2025-12-09 16:43:01,366 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-09 11:43:35] 2025-12-09 16:43:01,387 | INFO     | sufficient remaining disk space (18471714816 B)
[2025-12-09 11:43:35] 2025-12-09 16:43:01,388 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-09 11:43:35] 2025-12-09 16:43:01,388 | INFO     | current server update state: UPDATING_FINAL
[2025-12-09 11:43:35] 2025-12-09 16:43:01,388 | INFO     | update_server=False
[2025-12-09 11:43:35] 2025-12-09 16:43:01,389 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-09 11:43:35] 2025-12-09 16:43:01,389 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-09 11:43:35] 2025-12-09 16:43:01,389 | INFO     | aborting loop
[2025-12-09 11:43:35] 2025-12-09 16:43:01,750 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-09 11:43:35] 2025-12-09 16:43:01,758 | INFO     | all data control threads have been joined
[2025-12-09 11:43:35] 2025-12-09 16:43:01,867 | INFO     | all payload control threads have been joined
[2025-12-09 11:43:35] 2025-12-09 16:43:01,922 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-09 11:43:35] 2025-12-09 16:43:02,394 | INFO     | [job] retrieve thread has finished
[2025-12-09 11:43:35] 2025-12-09 16:43:02,395 | INFO     | [job] job monitor thread has finished
[2025-12-09 11:43:35] 2025-12-09 16:43:02,421 | INFO     | [payload] validate_post thread has finished
[2025-12-09 11:43:35] 2025-12-09 16:43:02,643 | INFO     | [payload] validate_pre thread has finished
[2025-12-09 11:43:35] 2025-12-09 16:43:02,651 | INFO     | [data] copytool_in thread has finished
[2025-12-09 11:43:35] 2025-12-09 16:43:02,708 | INFO     | [payload] execute_payloads thread has finished
[2025-12-09 11:43:35] 2025-12-09 16:43:02,761 | INFO     | [data] control thread has finished
[2025-12-09 11:43:35] 2025-12-09 16:43:02,785 | INFO     | all job control threads have been joined
[2025-12-09 11:43:35] 2025-12-09 16:43:02,872 | INFO     | [payload] control thread has finished
[2025-12-09 11:43:35] 2025-12-09 16:43:03,215 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-09 11:43:35] 2025-12-09 16:43:03,279 | INFO     | [payload] failed_post thread has finished
[2025-12-09 11:43:35] 2025-12-09 16:43:03,286 | INFO     | [job] validate thread has finished
[2025-12-09 11:43:35] 2025-12-09 16:43:03,307 | INFO     | [job] create_data_payload thread has finished
[2025-12-09 11:43:35] 2025-12-09 16:43:03,756 | INFO     | [data] copytool_out thread has finished
[2025-12-09 11:43:35] 2025-12-09 16:43:03,791 | INFO     | [job] control thread has finished
[2025-12-09 11:43:35] 2025-12-09 16:43:04,339 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-09 11:43:35] 2025-12-09 16:43:05,344 | INFO     | [job] queue monitor thread has finished
[2025-12-09 11:43:35] 2025-12-09 16:43:05,928 | INFO     | [data] queue_monitor thread has finished
[2025-12-09 11:43:35] 2025-12-09 16:43:29,471 | INFO     | [monitor] cgroup control has ended
[2025-12-09 11:43:35] 2025-12-09 16:43:30,502 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140195346134848)>', '<ExcThread(monitor, started 140194636359424)>']
[2025-12-09 11:43:35] 2025-12-09 16:43:32,077 | INFO     | PID=4646 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-09 11:43:35] 2025-12-09 16:43:32,078 | INFO     | found 0 job(s) in 20 queues
[2025-12-09 11:43:35] 2025-12-09 16:43:32,078 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-09 11:43:35] 2025-12-09 16:43:32,078 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-09 11:43:35] 2025-12-09 16:43:32,078 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-09 11:43:35] 2025-12-09 16:43:32,079 | INFO     | [monitor] control thread has ended
[2025-12-09 11:43:35] 2025-12-09 16:43:35,505 | INFO     | all workflow threads have been joined
[2025-12-09 11:43:35] 2025-12-09 16:43:35,506 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-09 11:43:35] 2025-12-09 16:43:35,506 | INFO     | traces error code: 0
[2025-12-09 11:43:35] 2025-12-09 16:43:35,507 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-09 11:43:35] 2025-12-09 16:43:35,631 [wrapper] ==== pilot stdout END ====
[2025-12-09 11:43:35] 2025-12-09 16:43:35,635 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-09 11:43:35] 2025-12-09 16:43:35,640 [wrapper] pilotpid: 4646
[2025-12-09 11:43:35] 2025-12-09 16:43:35,646 [wrapper] Pilot exit status: 0
[2025-12-09 11:43:35] 2025-12-09 16:43:35,666 [wrapper] pandaids: 6924335906
[2025-12-09 11:43:35] 2025-12-09 16:43:35,715 [wrapper] cleanup supervisor_pilot 16551 4647
[2025-12-09 11:43:35] 2025-12-09 16:43:35,720 [wrapper] Test setup, not cleaning
[2025-12-09 11:43:35] 2025-12-09 16:43:35,725 [wrapper] apfmon messages muted
[2025-12-09 11:43:35] 2025-12-09 16:43:35,730 [wrapper] ==== wrapper stdout END ====
[2025-12-09 11:43:35] 2025-12-09 16:43:35,734 [wrapper] ==== wrapper stderr END ====
[2025-12-09 11:43:35]  *** Error codes and diagnostics ***
[2025-12-09 11:43:35]     "exeErrorCode": 0,
[2025-12-09 11:43:35]     "exeErrorDiag": "",
[2025-12-09 11:43:35]     "pilotErrorCode": 0,
[2025-12-09 11:43:35]     "pilotErrorDiag": "",
[2025-12-09 11:43:35]  *** Listing of results directory ***
[2025-12-09 11:43:35] total 464308
[2025-12-09 11:43:35] -rw-r--r-- 1 boincer umatlas    579449 Dec  9 08:51 pilot3.tar.gz
[2025-12-09 11:43:35] -rwx------ 1 boincer umatlas     36292 Dec  9 08:58 runpilot2-wrapper.sh
[2025-12-09 11:43:35] -rw-r--r-- 1 boincer umatlas      5112 Dec  9 08:58 queuedata.json
[2025-12-09 11:43:35] -rw-r--r-- 1 boincer umatlas       100 Dec  9 08:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-09 11:43:35] -rwxr-xr-x 1 boincer umatlas      7986 Dec  9 08:58 run_atlas
[2025-12-09 11:43:35] -rw-r--r-- 1 boincer umatlas       105 Dec  9 08:58 job.xml
[2025-12-09 11:43:35] -rw-r--r-- 2 boincer umatlas 270944088 Dec  9 08:58 EVNT.47240566._000083.pool.root.1
[2025-12-09 11:43:35] -rw-r--r-- 2 boincer umatlas     15847 Dec  9 08:58 start_atlas.sh
[2025-12-09 11:43:35] drwxrwx--x 2 boincer umatlas      4096 Dec  9 08:58 shared
[2025-12-09 11:43:35] -rw-r--r-- 2 boincer umatlas    592400 Dec  9 08:58 input.tar.gz
[2025-12-09 11:43:35] -rw-r--r-- 1 boincer umatlas         0 Dec  9 08:58 boinc_lockfile
[2025-12-09 11:43:35] -rw-r--r-- 1 boincer umatlas      2600 Dec  9 08:58 pandaJob.out
[2025-12-09 11:43:35] -rw------- 1 boincer umatlas        57 Dec  9 08:58 setup.sh.local
[2025-12-09 11:43:35] -rw------- 1 boincer umatlas    976286 Dec  9 08:59 agis_schedconf.cvmfs.json
[2025-12-09 11:43:35] -rw------- 1 boincer umatlas   1516240 Dec  9 08:59 agis_ddmendpoints.agis.ALL.json
[2025-12-09 11:43:35] drwx------ 5 boincer umatlas      4096 Dec  9 08:59 pilot3
[2025-12-09 11:43:35] -rw-r--r-- 1 boincer umatlas      5909 Dec  9 11:36 init_data.xml
[2025-12-09 11:43:35] -rw------- 1 boincer umatlas 197096457 Dec  9 11:42 HITS.47240594._001595.pool.root.1
[2025-12-09 11:43:35] -rw-r--r-- 1 boincer umatlas       529 Dec  9 11:42 boinc_task_state.xml
[2025-12-09 11:43:35] -rw------- 1 boincer umatlas        95 Dec  9 11:42 pilot_heartbeat.json
[2025-12-09 11:43:35] -rw------- 1 boincer umatlas      1049 Dec  9 11:42 memory_monitor_summary.json
[2025-12-09 11:43:35] -rw------- 1 boincer umatlas    382657 Dec  9 11:42 log.47240594._001595.job.log.tgz.1
[2025-12-09 11:43:35] -rw------- 1 boincer umatlas      7830 Dec  9 11:42 heartbeat.json
[2025-12-09 11:43:35] -rw-r--r-- 1 boincer umatlas      8192 Dec  9 11:43 boinc_mmap_file
[2025-12-09 11:43:35] -rw-r--r-- 1 boincer umatlas        27 Dec  9 11:43 wrapper_checkpoint.txt
[2025-12-09 11:43:35] -rw------- 1 boincer umatlas      4745 Dec  9 11:43 pilotlog.txt
[2025-12-09 11:43:35] -rw------- 1 boincer umatlas   1365269 Dec  9 11:43 log.47240594._001595.job.log.1
[2025-12-09 11:43:35] -rw------- 1 boincer umatlas       357 Dec  9 11:43 output.list
[2025-12-09 11:43:35] -rw-r--r-- 1 boincer umatlas       620 Dec  9 11:43 runtime_log
[2025-12-09 11:43:35] -rw------- 1 boincer umatlas   1771520 Dec  9 11:43 result.tar.gz
[2025-12-09 11:43:35] -rw-r--r-- 1 boincer umatlas      9337 Dec  9 11:43 runtime_log.err
[2025-12-09 11:43:35] -rw------- 1 boincer umatlas       660 Dec  9 11:43 d9ENDmRPDn8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdUQKDmnb9HKn.diag
[2025-12-09 11:43:35] -rw-r--r-- 1 boincer umatlas     21161 Dec  9 11:43 stderr.txt
[2025-12-09 11:43:35] HITS file was successfully produced:
[2025-12-09 11:43:35] -rw------- 1 boincer umatlas 197096457 Dec  9 11:42 shared/HITS.pool.root.1
[2025-12-09 11:43:35]  *** Contents of shared directory: ***
[2025-12-09 11:43:35] total 459412
[2025-12-09 11:43:35] -rw-r--r-- 2 boincer umatlas 270944088 Dec  9 08:58 ATLAS.root_0
[2025-12-09 11:43:35] -rw-r--r-- 2 boincer umatlas     15847 Dec  9 08:58 start_atlas.sh
[2025-12-09 11:43:35] -rw-r--r-- 2 boincer umatlas    592400 Dec  9 08:58 input.tar.gz
[2025-12-09 11:43:35] -rw------- 1 boincer umatlas 197096457 Dec  9 11:42 HITS.pool.root.1
[2025-12-09 11:43:35] -rw------- 1 boincer umatlas   1771520 Dec  9 11:43 result.tar.gz
11:43:37 (436): run_atlas exited; CPU time 73813.163954
11:43:37 (436): called boinc_finish(0)

</stderr_txt>
]]>

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